Array 1 18266-18767 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAS01000071.1 Ligilactobacillus agilis strain PTL465 sequence71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 18266 30 100.0 38 .............................. GGCCTTTACTAGGTCGGTTGCTCGTGCGTGAACAACCG 18334 30 100.0 35 .............................. TCATTCTGAGGTCATCAAACTTATCGTTCAATGCT 18399 30 100.0 38 .............................. GTCAAAGGCTGCTGAAGTTGTAAAGATAGTGTTATTGC 18467 30 100.0 37 .............................. TTCTGCTTTATGGCAAGGAATTGTTGCGGTAGCTACT 18534 30 100.0 37 .............................. ATAAATTGTATCTGCAACTAGTTCAGGGCTAACTTGA 18601 30 100.0 36 .............................. TAACCAAACTGTCTTGTATTCCTCAAAGCAGATTCT 18667 30 93.3 38 .................T.......C.... TCATGTGTAAGGCGGTTACTAAATCATCACTAGAGAAG 18735 29 90.0 0 ............T....A.......-.... | AA,T,G [18756,18764,18766] ========== ====== ====== ====== ============================== ====================================== ================== 8 30 97.9 37 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : AACTTATGAATGATATCTGGGAGTTGGTGAAGAAGTATGCTGGTTAATTATCATGCCCCTAAGTATGTGTACATTGTTTGTGGTAACACTGATTTACGTAAAGAAATTTTTGATTGCCGATAACTTTGGTTTAGATTTTTATGATGATTCCTTATTTTGTGGACGGAGAATGATAGGTTTAAGGTACTTTACTGGGACAGTGAAGGTTTCATACTACTTTACAAGCGCTTTGATGATGGACGTTTAACCTGGTCTCGAACTAGCGAAGAGATAATATTCTGTTATGGAGTGTTTACGGTTTTATTAGCTATAAGGTGCATATATCTGTCGACCGAAGGTAAGGCAAAATAGTACTGGTATCGACAGATAACAAAAAGGTTGATATTAAGGGACTTGAAAGAATTTAGGGAAAAAAGTAGTATATAACTGAGGGTGGAATTTGGTGATAGACAGAATGTATGTGAAACATAGTTGGTAGTATGAGGCTTTGAGGGCGCAGT # Right flank : TGTGGAGAGATGAGTGTTGCTATGGAAGACTCAAAAAAGACATGGAAAATTGATGGGTATGTATGGTTGCATTGTCCTGTGTGTGGGCATGAGGTAATGGATTTCGATATTTGTGATGTCTGTGGTTGGCAGAATACGGGTATAAACAATGTGGATGGCGGGCCTAACCACATGACTTTAGAAGAAGCTAAAAAAGCTTATGCTGATGGGCGTGAGATTAACTAATAAAAGTAGGCGCCGTAAGCGATAGTTGCTAGATTAGAATTTATGGCTCAACTAGGAGAAAAATTAAGCCATTTAGGCTAATGACAGTAAAATGTGCAGGAAATGGGTTCTTTCTGTCTTTGAAGTGCTTTACAATTGTTAGATAAAGTCTAGTGTTTGAGTAGATTAAAGATCGTGATTCACATTTTGATTGTGAGTTTACGATCTTTTTTATTGATGATATCTTTATTTAGAACGTTAGTCATTAAAATTTATATGAGTTATGGAATAGTTCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 20804-21131 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAS01000071.1 Ligilactobacillus agilis strain PTL465 sequence71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 20804 36 100.0 35 .................................... ATTGCTTTTTGCGTTTCTAAATTAATGTTTTTCTT 20875 36 100.0 36 .................................... TCTACTTTTTCTATAAAATGGTTAACATATCTATCT 20947 36 100.0 38 .................................... AAAATTATCTTACCGTCGCGATGTCTGAACCCGGTCAA 21021 36 94.4 39 ...................C.A.............. AAGATTTCTGCCGTACTAGAATAACTAGTCTTAATCATT 21096 36 86.1 0 .....................A.........C.CTA | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 96.1 37 GTTTGTAAGGTATCTCCGTTAGTAGGAGTCGAAAAC # Left flank : TTTGAACTTTAGTTCACGGGTTGTTATGGGATAGTGGCGTGAAGTCGTTCGCGCCTAGAGCTTTGGGGAGATTACTGAGTTTTACGAGGCTGTAGTTGGTTTTATGGAATTTTTGTTTTACTCAGTTAATCGTTACGAAATTCGTAGACATAAGGCTAGGGATGGATAGCGTACTAATTTTTAAGTTATGAATGCGTGTTGCTAGGTTAGATGGTTGACTACTTAAGGTCATGTTTTATGGTTGGTTAAAAGTTAAGGTAAAAAGGACTTAATAATTTTGAAACTTAGAAAAAAGGTATTAACGTGAAAGAGTAGACTAGCTTTCAATAAAACTTAAGAACGGGCTATTATTTTGGTTATCCGTCCAGTATAATAGCTATGTGGATAGAAACTTGTCCAAATTATGACCGAGTAGGACTAGTTCCGTTTGAATTCGCCCTAATTTTGGGCGGTCTAAAAGAGGGCTGAGGCTTGATATCTCAATAAGAATCTAATGCTCG # Right flank : AATAAAAAAAATCAGTCAAATTCCGCTTCAAAAGTAGAATTTGACTGATTTTTTATAATCAAAGCTTGGTATATTAATGTTTTTTGGTGCCGTCGATGTATTCAGCAATTTGGTGATTGAGTTCCTGGTAGTCTAAATAGGTGAGTGCGTGTTGGGAACCCGGATAGATTAGTTGGGACAACCTCTTTAGGTTAGTCATGAGCTTATTTAAGTCTTGTAAATCAATTAGGAGTTGACCTGCTGACCAAAGTGAGCCATCTAGCTTAGGATAACGGGCACTTACCGTCTTAAGAACTTTAGAATCAAATTGTTGGGAACCACTAATGTTGTGGGCCAGCTGATTACGAACGGACTCTTCAATAATTCGAAAATAAGCCATGGTGTTATAAATTTCTTTAATTTTTTCCTTATTAAAGTTGCTATTAATAGGGACTTTCTTATTATAGCAACCACGGTAAGTTCTAAGTAAACCCACGGAGTTTAAAAGAATCCCCTTATGA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAAGGTATCTCCGTTAGTAGGAGTCGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 24103-24423 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAS01000071.1 Ligilactobacillus agilis strain PTL465 sequence71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================= ================== 24103 33 97.0 40 .....................G........... GACTGCCAAAGGCCTTCATAACGATAGTCGTAATCATCTA 24176 33 97.0 37 .....................G........... AACATATTAATCTTTCCAAAAATGTCACAGCACGACT 24246 33 100.0 41 ................................. AACTCAACGGGTTCCATGCAACCTTTTAAGTTGATATGAGG 24320 33 100.0 38 ................................. AACTCTATAACTAAATCAATGTTTCCATCTGAAATCTC 24391 33 93.9 0 ..................C.............T | ========== ====== ====== ====== ================================= ========================================= ================== 5 33 97.6 39 GATAGTGATGTATCTCCGTTAATAGGAGTCGAA # Left flank : GTTAAGGCAATTTCTTTAAGCAAGCTTACTAATGAAGCTAACCTTAATTGCTTATTGAAGTTACTTGATTTAGATGAGATAAATTCCTTAGAAGAATATCAAGCAGAATATTATCACAGCCTAATGACTAGGGAAGTAGGAGGTCAAGTTAGACATTACCTGTATTATGTATTAAAAGATATCTTACTGCGTAATGCGCTACGGTTTGAGGGGAGTTACTTCTTAAATGTTCATCATGAAGAGCAGACAAACGAAATCTATTTTTATACTAAGCTAGACACGAGCAGCGATGAAGTTGCTTACCAAAATTTTAAGGGGAATCTGCAGAGGCTAGAACAAATGGCCTAATGGTTGAAAGCGTATGGTATAATGAAAGTGTTAAGTGGAAGTGTTCGCCCAAATTTCGGGCGAACTAGGCTGGACAAGGGATGGGGTGCCCGCTTTTTGGGCGACCAAAAACAACTCTTGAGCTTGATTTAACAACGATTTGAGTGGTATGG # Right flank : TTGTATGCAAAAAGCAGCCAAGCTACGATGAATGTAGCCTGGCTGCTTTGTTTGTTATAGGGGGCTTTAATTATTAGAGTTCTTCTACCTTGTCGATGGTGCAAAGGCCGGTTAGGTAGTATTGGTTTTCCCACTTGGTTAAGTGGATGATGTGAGGAGAAACTTCGTGATCGTTTAAGTGACCATGATTTTTGAAGTTAGAATGAAGGAAATTTTTAACGAGTTCTAGGTTAGTTTCAGCATCCGGTACTAATAAACGGTATAAGGTTTTAGTCCCAAAGCCGGTGTTACTACCTAAAAAGAATGTTTCGTCATTAAGAACGGCTTCTTTACGAAGATAATCAACATCTTTAAAAGGTTTGAGGTAGTAGTCAAAGTATTTCTGCTGACTTACTTTTAAGCCCGGTAAGATTTCGGTTAGACTTTGACCACGGAGACTGTAAAAATCAAGTTTAAAGTCAATACGGACACCGGGTTTGATGAACTCATATAGATTAGTT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAGTGATGTATCTCCGTTAATAGGAGTCGAA # Alternate repeat : GATAGTGATGTATCTCCGTTAGTAGGAGTCGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 31919-33074 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAS01000071.1 Ligilactobacillus agilis strain PTL465 sequence71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 31919 30 100.0 37 .............................. TGATAAACTTGGTTTTAAACCCCCCTCTTTCCGTAGA 31986 30 100.0 35 .............................. GTAATCAAGTTTCGATTGGTGATGTACCCATTGAC 32051 30 100.0 38 .............................. GTTTGGAATCTTTGTAGAATTACCTGTGTAAACTTTTC 32119 30 100.0 37 .............................. ATTAATAGTTATAGTGGTCGGCAACTCTCACTTCACG 32186 30 100.0 37 .............................. CAGTTTACCGATTCAAAGTGCGCGTGCGGTGCGCCCC 32253 30 100.0 36 .............................. TAGAAATGTTGTTTACAAATTCTACTTCGATTTCTG 32319 30 100.0 36 .............................. TTAATTCGTTAGAAAAATTAATTAAGTTTCCTAAAC 32385 30 100.0 37 .............................. AATCAGAATCACAGGCAGAAACACCGCTATTTTACAC 32452 30 100.0 37 .............................. CTTTATATTGTCTAGAAAATTATAAGTATCTTTGCTA 32519 30 100.0 35 .............................. ATACTTTTTGTGAATTGCTCTAGCTCTATGTTAAT 32584 30 100.0 36 .............................. GATACCAAGTAATTTCTCACAGTTGAAAGTGATAAC 32650 30 100.0 36 .............................. TTTAGTACGTTGACTTAATACCGTTTTTGAATTATA 32716 30 100.0 38 .............................. GGAATAAATGCTTCCGTATCGGTTGCCACTACATCAAA 32784 30 100.0 34 .............................. ACGTATACGAATGGTGCGGCGCGCCTCAGGTCAG 32848 30 100.0 36 .............................. TGAACTCAACGGCAGGAACTTCATCAAATAACGTTG 32914 30 96.7 35 .................T............ TCTGCTTCGAACAAGCCGCCTCTAGGCCCCTCTTG 32979 30 93.3 36 A................T............ TATCATCAAACTGCGACCGATAGCCAAAGCCAGCGT 33045 30 93.3 0 ....T............T............ | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 99.1 36 GAATCTATTTAACTTAAGAGGAATGTAAAT # Left flank : AATTAGTGAGGTTGGGCATGCCGAAACTAAGTCGTCTGAGTAGCTTGATTTTGTGGTTGATTTCTTTAATGGGGATATTTGAGTATTTAGCAGACTTAGGAGTAGGAGATTAGCGATATTCAAAACGTAGCTTAGTTTTTTATCTATTGTTAAGCTATTTGATGTTTAAATCGAGTGATTATTATTAGTATTCTTAATGCTTTTAGGGTAAGTATCATCATGCTTCTTGGTTCACTGGACTTTTTTTCATAAGAAATTTTAGCTGCAAAATTGTTGTGGTGAAGTGCATTTTTTCTAGTGACATTTTGTTACAGGCGCTAGTATCTGTCGACCTAAGATAAGGTGAAATAGTGCTAGTATCGACAGACAATAAAAAGGTTGATATTATAGGCCTTGAAAGAATTTAGGGAAAAAAGTAATATATAGTTGAGAGTGAGATTGGGCGATAGACAGAATATATGTGAAAACTAGTTGATAGTACAGGGTTTTGGGAGTGCAGT # Right flank : TTGCTAGGTCTAGTTTGGTAGAAACGGTGAGTGCGATGAATGTTCTATCGAATGCAGATTTAGAAACAGATGACGTCGTGGTAAAACTGGTCACCTAGCGGGTAGCCACTTTGAATAAGCATTTTGTTAGCTAAACCGTTATGGTGGATTGATTCCGGACTTAGAGAGAATTTTAGGAAGATGTAACGTCTAGAAGGAGTAGCTTAAAAGTATTGGTTTATGCTGAAATTTTCGCGAAAGAAGAATGACTTGAAAATAATCTAATAATGTTAGATATAGACGCATAGCGCTAATGGAGGTGGAGGAGATGAAACTGTATAAATGGAAAAAAGGCGACGGAAAACAGCTATTAGGGTGGTTAGTAGCTGTTTTAGTTGGTGGCGTTATTGCATTGCCACTCTCGATTTTAGGTGTTACTTCAATTGATGATATAATCATTCCGGTTTTCTTTATTGTTGGCTTCATTACCTTTATTGGCGGTATCTTTAAATGGATATTTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 35219-35639 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAS01000071.1 Ligilactobacillus agilis strain PTL465 sequence71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 35219 29 100.0 36 ............................. AAATCTACTAGTGAATAGATTGGTGATTTTGCCATA 35284 29 100.0 38 ............................. CAAAACTTCGGCAAGCCCAAAATGACGAAAGAAGAAAT 35351 29 100.0 35 ............................. CTTGCAACCAGTCTTGAAACCAAGGCAACGTATGG 35415 29 100.0 36 ............................. CGGACCGATAAATCTTGGCACCCTAGCCAGTTTGTA 35480 29 100.0 37 ............................. AAACCGACATTTGTTTTAATAATTACTCTTTTTTCTT 35546 29 96.6 36 ............................G CAAAGCGCTGACTTTGGGTTGCAATTCCCAGTTACG 35611 29 96.6 0 A............................ | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 99.0 36 GATCTATTTAACTTAAGAGGAATGTAAAT # Left flank : AAGCATGCCGAAACTAAGGCGTCTAAGTAACTTGATTTTACGTTTGATTCCTTCAATAGGGCTATTTGAGTATTTAGCAAATTTAGGATTAGCTATATTCAAAACGTGGACCAAATTTTTATCTGTTATTAAGTAGGGTATTTAAGGTTTGAATTAAGTGATTATTATCGATATTCTTAATGCTTTTAGGATAAGCGTCATCATGCTTCTTAGTTTACTGAACTTTTTCTCGTAAGAAATTTTAGCTGCAAAATTGTTTGTACATGGAGTGTTGTGGTGAAGTACATTTTTTACTAGTTACATTTTGTTATAGAGTGCTGGCATCTGTCGACCTAAGATAAGGTGAAATAGTACTGGTATCGACAGACTATAAAAAGGTTGATATTATAGGCCTTGAAAGAATTTAGGGAAAAAAGTAATATATAACTGAGGGTGGAATTTGGTGATAGACAGAATGTATGTGAAAACTAGTTGGTAGTACAGGGTTTTGGTAGTGCAGG # Right flank : TTTAGCTAATAGCGACTCGAAATCAATATTGGTTATCAAGAAAGCGGGCAGCTAGAAATAGTTGCCCCTTTTCATATTCTAAATTGCAAGTACTTCATAATATCATGTATGTAAATATGCTACTAACACGGATATGGTACAGGGGGACTATATCAAAGCGTGCTTAGCCGAGATTGTAGGAGAAAGGGTTAAGTCCACGCATGTGGGGAAAATTCTAACCGATATTAGGTGCCTCTACTTGAGAATACTGCTATAAATATAACCAGCCTATGATTGAATGCTCACGTTTCAATCATAGGCTGGTTTAGTTTAAGTTAGTTATCGTTGTGGTAGTAATTAATCAATTCTTCATAGGTGTCGAGGGGCTCGAAATTGAGGGTCCACTCAACTAAGGGCATATCCTCGGGGGTCAGCTTATAGGCAATTTCATTTGGATCTAGGTAGACGGCTTCGGGGTCAGGTAAAGCTTCTTGCATCACTTGGCCAAAATATTCACTATC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 38603-39946 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAS01000071.1 Ligilactobacillus agilis strain PTL465 sequence71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 38603 30 100.0 36 .............................. CCAATAAGTAGTTTCCATGTTCCCCTTCTTATCATA 38669 30 100.0 35 .............................. CACATTTGCTCTGTTTCCTTGTAAGTATGATTTTT 38734 30 100.0 35 .............................. ATTCTTGCGCTTTCGAGCCCGAACTTTCTTAATGT 38799 30 100.0 38 .............................. TTTAGATGTTGGCTAAAACCTTGTGGCTGTAAGGGTTG 38867 30 100.0 36 .............................. GTAGTTCGAGCATTAGGAGAAATGGCGGGCGTCATT 38933 30 100.0 36 .............................. GTTAAGGTCAACGTTCACTTGGAAGACGATGATTAC 38999 30 100.0 38 .............................. TTTTCAGCGTGCCAGACGTCCCCCAGGGAGTCGGTCCA 39067 30 100.0 36 .............................. GGAGCAAGCGAACAGACCACCAATAGCGCCATAACC 39133 30 100.0 34 .............................. ACGGGCGACCACAAACACTGGATGAAACAAGCCG 39197 30 100.0 38 .............................. AAAGGGCTGTTAGATATATCAGCATTACCGTAATCATT 39265 30 100.0 37 .............................. TTTATCTACCGACACGTTGTAAGGATATTGAGCAATC 39332 30 100.0 36 .............................. GAAGCTGAAATCAACAAGCAAATTGCCGAAAATATC 39398 30 100.0 36 .............................. TTCATAAGACTTAGTTCCTTCTTCTAACTTAGCCTT 39464 30 100.0 34 .............................. AAAGTTATAGCATCTTCTTTGGCAGCGTCTTCGG 39528 30 100.0 38 .............................. CATACGACATACATGGACATCAGACGTGAGGTTCTCCG 39596 30 100.0 36 .............................. TTTGTCGGTTCGGGTACCTTCGTTTTTGACCTTAAC 39662 30 96.7 36 ....C......................... GCGTATGCAAGGATATTCTTTTAAGTGGCTTAACTC 39728 30 96.7 37 ....C......................... GAGTTTGCTGGAATCTATTTGACTTCGCCGTTTGCTT 39795 30 83.3 23 ....C..............A.....A..GG GGGTGAGTGCTAATGGAGCTAAT CC [39816] Deletion [39848] 39850 30 96.7 37 .............................G CAGGATAGATGCTTTTTTGAGAGAGAATGAGAGTACA 39917 30 83.3 0 ............T.......A...AA...A | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 97.9 36 GATTTTATTTAACTTAAGAGGAATGTAAAT # Left flank : GGCGTTTGGGGATAACATAAAGGTCTCCTTGGATAAGGCTTTATGATATCTTAGGACCTTGTAACCGTTGATACATCAAGCTTTATATTTTATAAATGTTTGATAATAATTCTTTTTTAGAAAAAAGTATGCCGGGCATGCTTAACAATTATAATAACTTTCCCTGGTGAGTACCGTATGTTTTAGATATGGTATTTTTTATACTCTCTTTTTATTTTTCGCTAGTCTAAAAAATATGCTGAAGTATGCTTTGAAGGCTTGCAGGGGAGAGTCCATAGTGATGGTTTTAATTCGGAATGCTAACTAAGCTTCAAGTATTATATCTGTCGACCGTAGATAGAGCAAAATGAAGGGGACATCGACAGATAGTGAAAAAGTTGAAATCACTGGGCTTGAAAGAGTTTACAGAAAAAAGTATCATGTAAATATGGGGACAAAAGTAGTGATAGACAGAATGCGCGTGGAAACTAGTTGATAGTACAAAGCTTTTAAAGGGTAGT # Right flank : AGTTACTAAGTTTGTGTACATAACCATGTGTATGTCAATACATTGATTACTAATATATGTAGTCATGATTGTGTACAAATATGACCAACAAGTAATTTATATGCCTAGTTATATCCACATTCTGTATACGCAGATATGTACATTACTAAATCATATACTCATCAACGTACATACAATTGCCTAACTACCTTGTATTTTTGATACAAAGGGTGTATGTACTAATTTAATTTTTTAGTATCTACAAAATTTGAGGTTATCAAGTTAGAACTTTTTTATTAATCGAAGCAAATACAAAATAGCAAATTTTATCTGGCTATAATAGTGGAACAAAAAGAGGAGGAGTTTAAAAGTTACCAAAAATATAGAATATTGTAGAAAACGATGGAATTATAATCAATCAGAAAGTAAAAATGTGGGATTGATGCATTCCAGAACTTATGTTTTAAAACTTGACTAAGAAAGTGCTATCATCTCTGTAACAGGAGGTGAGTTTATGTTGC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //