Array 1 197862-199531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYH010000001.1 Listeria booriae strain FSL L7-0245 NODE_1_length_740506_cov_36.242600, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 197862 30 100.0 34 .............................. CAAAAAATCACTGCAAAAGGCGACGGCGTAATCG 197926 30 100.0 34 .............................. TTAACTGTCGCCACTTCGATTCTATAGCATCCTT 197990 30 100.0 36 .............................. TTTTATTTTGAAATTCATTATTAACAAGACTATCAA 198056 30 100.0 36 .............................. TAATTTACGAAGTTCATCAATAAAAGCTTGTGTTCC 198122 30 100.0 36 .............................. TTTATTGGTGGATTTTTAGGAACAGTCATTGGATTT 198188 30 100.0 36 .............................. TTAGTTGCAATATTGATAATCCCACTATAGTTTTCA 198254 30 100.0 35 .............................. CACCAATAATCTTGTAAACACCCGATTTTAGTTCG 198319 30 96.7 35 T............................. TTGGTATCCTATTCCTTCCAACCAAAAAAGACAAG 198384 30 100.0 35 .............................. AATTCCTGGTCAAAAAGGGCACCGATTTTAAGTAC 198449 30 100.0 36 .............................. TTCTATAGAAAGAACTCTCTTTTTTGTTTTCTTAGT 198515 30 100.0 36 .............................. TACACATGTGTACCACTTATATTCTTATGATACTTT 198581 30 100.0 35 .............................. GTGAAAGACAACTTTGCGAAAACAGAAGGTGGCGT 198646 30 100.0 36 .............................. AGACTATCACCTCCACAATCAACACTATAAAGGATT 198712 30 100.0 36 .............................. ACAAATGATGAATTAGCAAAGCTCAGTCCACTACAA 198778 30 100.0 36 .............................. ATCCTAGACGATCGTCATGTGCTTGAAGTCGTTTTT 198844 30 96.7 35 ............A................. GTACTCAAACGGAAAAAGACGCCTAGGAATTAAGA 198909 30 100.0 36 .............................. TCAATCATAAGAGTGGCGGACACTTCATGTTCTAAA 198975 30 100.0 36 .............................. ACTGTCTAGCTTCAAACGCATTGATATTACCTACAA 199041 30 100.0 34 .............................. CAGCCAGACGGGACAAAGATTAGATTTGCTATTT 199105 30 100.0 35 .............................. AAGACTATAGAGTCGGCACGAGTAATTGACATGGA 199170 30 96.7 36 .C............................ TACGTCTGTTGTATCGCCTTTTCTATGTTTGTTTTT 199236 30 100.0 35 .............................. ATAGCCATTTTTAAGCACCCAGCCTGTACCCACTC 199301 30 96.7 36 .................A............ ATTAGCCACATATGTCAAACAAAAAGTCGATGCGAA 199367 30 100.0 36 .............................. CGTGTTCAACTATCTAATGCAGAAGAAATCGAGTTA 199433 30 93.3 35 .................A......A..... CAGACAGATGCGGCATGAGCGGAGTTTGACAGATT 199498 30 80.0 0 ..C.........A....A.....GA..G.. | TCC,C [199520,199526] ========== ====== ====== ====== ============================== ==================================== ================== 26 30 98.5 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGTGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTGGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGAAAAAGAGGCGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATGAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGATTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGGTGAGGTACCT # Right flank : TTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGTAATTTGATGGTGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTAAGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGATGCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 196594-196294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYH010000003.1 Listeria booriae strain FSL L7-0245 NODE_3_length_597675_cov_39.247103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 196593 36 100.0 30 .................................... AGAAAAAGAATCAATGACTTTTTAGGAGGT 196527 36 97.2 30 ................A................... TTTTTTCCTTGAAGGAAGTACAACCAATAA 196461 36 100.0 30 .................................... TTTGGTGATGATATGATGATGCGCTGGTAT 196395 36 91.7 30 ........T...............A..C........ ATAAAAAGAGAAAAGGGAGTTTTAAAAATG 196329 36 77.8 0 ..........................TG.AAT.CAT | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 93.3 30 GTTTTAGTCCTCTTTTGTTTTGAGGTATTCTAAATC # Left flank : TTTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATTCCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTTATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATCCATTGGCAATTACCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTTTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : ATCTATTTTCTTTCAACAGTTTAACTATACCAGATTATTAGTAACTCTGCATCTTCGCGTAATCACACGTACTAAATAATAATTTCCCGTACTAAATCAACAAAAAAACACCATAAACCGCATCTTACACAGCGATCTACAGTGTTTCCTGTTCTTTCTCTAAGCGGAGAAACGGGGATTCGAACCCCGGCGCGGCCGGAACCGCCTAACAGATTTCGAGTCTGTCCCCTTCAGCCGGACTTGGGTATTTCCCCAAAATGCAATGTTGTTGTGGCAGGCCTAAATGGCTTGGCTTGAACAATTACAAGTTCCATTCTAATGCATTTTTTTCGAAAAATCCAGTTTTTTATTTAATACGCGTCATAAAAATCGCTGCGCATGTGGGGGATTACTTTTTCCCAGGCTTCGATGGTTATTTCACTGGCTTGGGCTTTTTCGTAGTAAACGAGGTCTCGTGGTCGCACAAAGCCCATCATCATTTGTCCTAAGCCTTGAATCGT # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTATTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 200388-200022 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYH010000003.1 Listeria booriae strain FSL L7-0245 NODE_3_length_597675_cov_39.247103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 200387 36 100.0 30 .................................... TGCTTGACGCACAACTTATCTACTCGCCGT 200321 36 100.0 30 .................................... CAAACGATTGCGAGAACTGAATCGGGTCGT 200255 36 100.0 30 .................................... TCCACGGTGTAGAACATGATAAAGATATTG 200189 36 100.0 30 .................................... TATTTTACCTGATCCAACCACGCAAGGCCT 200123 36 100.0 30 .................................... GGTAGCACTTTACTAATCCTAAACAGACGT 200057 36 88.9 0 ...........................T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.1 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ACTGTACAGATATCCCCATATCAAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTCTTCGCCTTGAAGTGTGATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGCATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCTTCATTGACTACCGATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : TTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAACGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTGTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGTATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAATCTGGCCTGTTTTTTCTGGTAGTATTAATCCAGCTATCCACTCTTTCGGTATGTCCAGAACTCTTTAAACATTGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 329151-331430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYH010000003.1 Listeria booriae strain FSL L7-0245 NODE_3_length_597675_cov_39.247103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 329151 30 100.0 35 .............................. TGCTTGATACGAGCCTCCATTTCCATCTTTTTTAG 329216 30 100.0 36 .............................. GTCAACGTGTAATTCTAGCCCAGAAACAATACGTTC 329282 30 100.0 36 .............................. ATGTTTAACAAAGTTTTCAAAAAAGACCCTCGTTTT 329348 30 100.0 36 .............................. AAGTTCATTAGGTCATCTTTGTGGTTATGTAAATAT 329414 30 100.0 37 .............................. TCCAGTCAATTAATGCTGGAATTACTGGTATTGTGTC 329481 30 100.0 36 .............................. TACGTTCGAGGACTTGCTTCTGCAAAGTCTGTTAAT 329547 30 100.0 38 .............................. ATTCGCGTGGTTATTGTACCGCGCGATAGCACTAAGCC 329615 30 100.0 37 .............................. ACGTAATGAACTCAAAGAAGAAGAAATTCTAGCAAGA 329682 30 100.0 36 .............................. AGTCAATGCTGGCGGTTCACCTGTCAATCCAGGAAG 329748 30 100.0 37 .............................. TTAAGTTTTAGCACTCTTAATACTGCTTTTGTGGAAA 329815 30 100.0 38 .............................. CCCTCTGAAAGTGCGGATACTGTATCAGCGTTATAAGT 329883 30 100.0 36 .............................. TCCCATGGAGTTCTTCAAAAAATAGCTGATGTCTTT 329949 30 100.0 36 .............................. CTTGGAGTGGTGATTAGTTCTCTATAATGCATGCCT 330015 30 100.0 37 .............................. TTGAAAAGTATAGAAATCTGGTATAGAGGAGATTGGT 330082 30 100.0 38 .............................. GCCATCGCGAAGCCCTCCATGGTATAGTGCAACCCGTG 330150 30 100.0 36 .............................. TTTACCTTTTGACTTACGACGCATGTGGCGAATCAT 330216 30 100.0 36 .............................. TCCATTGTTGCGTCAATATTGTCGCAATAGGCTTTA 330282 30 100.0 36 .............................. TTATTACAAATTCTTGGTGATGAGGCGCTGGATATT 330348 30 100.0 35 .............................. TCCGTTACGCCTTAGTGGAGTCTGACAAGATGGAT 330413 30 100.0 34 .............................. TGTAAACCAATTGACCATCCAATAAATTATAAAT 330477 30 100.0 36 .............................. ATCCGTACATTGTTTATACGCATGCTTTCGAAAAAG 330543 30 100.0 36 .............................. ATTATGCTAGGCGAAAAACTTGTGCTAAACGAACCA 330609 30 100.0 36 .............................. AATTTTACGGGCATTGTCACTATTCACAGTCTTAAA 330675 30 100.0 36 .............................. TAGGGACGACCAAATCTTATTAATTCCCTTCGCCAT 330741 30 100.0 36 .............................. CCAGATAGTACGACTTTGTACCACTTATTCACTTGA 330807 30 100.0 37 .............................. TTTCGATGCATCTGGATCCGTGAAGTTGAAGATATCC 330874 30 100.0 35 .............................. CCTGTTGCTGGTATAGTACCGCTGCTTTGTTTACA 330939 30 100.0 37 .............................. AAGATATGAAGAAGATTAAATCAGGAAAAAAGTAAGT 331006 30 100.0 37 .............................. AGTGAGAGAAACGCGAAAGTTTTATATCAAGAAGAAA 331073 30 100.0 34 .............................. GTGACCAGTAGGGCTATTGCCGCAACTATTCCGG 331137 30 100.0 35 .............................. TAGGCAAGGCGGATACAATCCCGTTAACCAATTTC 331202 30 100.0 36 .............................. TTTTGAGTTAGTGACTTTGTTTTGAATTCTACTTTT 331268 30 96.7 37 ..................C........... CAAGGTATTGCGGCTGGTATTGATGCAGATGCAAAAC 331335 30 93.3 36 ..........................G.G. AAGGACAAAGGCCAAACGGTACACTTTACAAACTCG 331401 30 80.0 0 .......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ====================================== ================== 35 30 99.1 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCATGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCATTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGGTGGCTGGAAAAGGAGTTTTGGGGCGTTGCAGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTATTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGAAAATTTAGGATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCAATTTGTTTAGCTATGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGTCTTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTTCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGAGGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGTGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 44269-43253 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYH010000007.1 Listeria booriae strain FSL L7-0245 NODE_7_length_151691_cov_39.729966, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 44268 30 100.0 34 .............................. CGTATTGAAATTGAAATAAGAACCTAGGACTTTC 44204 30 100.0 37 .............................. TAAAGTATAGCGTGTGGTGTTCTATCTCCCAAGTTAA 44137 30 100.0 34 .............................. GTTGGATATAATTGTGATAATTTTGCCTTCTGAA 44073 30 100.0 35 .............................. CGCTATTTATTCCTTGAAAACGTTAGAGGGCTATT 44008 30 100.0 36 .............................. GTACTCAGATGTGATACATTTGCGCGGCTGGTGTGC 43942 30 100.0 37 .............................. GACGAAGGGCGGGGCTCTTCTAATCCAGTAGCGCATC 43875 30 100.0 38 .............................. CAGACAGATGCGGCGGCGGCTGAGTTTGAACGCTTAGG 43807 30 100.0 37 .............................. ATGGCTGTAGTTCGCGTAGACGGGATTTAAAACTTTG 43740 30 100.0 33 .............................. GACTTAAAGGCGCAGAAAAATTACCAAACTGCG 43677 30 100.0 36 .............................. ACACCTAACACAATTGAAGTGATAGGCAGCCATTTT 43611 30 100.0 38 .............................. ATAAACTCGGCTGTGAACTTCTCATTTTCAGCCTTAGC 43543 30 100.0 34 .............................. TTCATCGAGAACAGCCGACAGTTTTCAACTTTTT 43479 30 96.7 38 .................A............ ATCGTGGTTGGATGCGCAATTGCGTTTTTTAAGCCCAG 43411 30 86.7 36 T........C.G.....A............ CCGGAAAAAGAAGCTATTGGAAATGCAAGCATTTTT 43345 30 93.3 34 .........A..................G. TTATCTGCACAGCACGCAAGATTGGGAACTTACG 43281 29 73.3 0 ............T...-.A.G...CC..CA | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 96.9 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTCGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTGGATAAAGAACGCCTTGTTCAGAAAACAAAATTCGGCGCGAATGTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACAATTCCTGTGAATAGCGCATTGATTGTGCAAGACGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGGTACTAAAGAGGTTAGGCCTATTTTCGGAGTTTGGGTTGTAAGATTTGAGGGCGATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : AATAAGGCATTAGTAAAACGAATTGAATAATAAGAGGGGTACTATCCATTATTCAGTATTAATGGATAGTACCCCTCTTATCTATTCGCCTCTATGTTGAAAATTTTATGCAATTAACAACAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTATTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTGACAGGGATTTTAACACCCTCTACACCATTCACAGTAAGGCTAATTTTTGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACAATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATGTGATATTGTCCGTATTTTTTAAAATCACTCGTTTTGCATAATACTTAA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 48602-47516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYH010000007.1 Listeria booriae strain FSL L7-0245 NODE_7_length_151691_cov_39.729966, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 48601 30 100.0 35 .............................. TTTTTTTGAATGTACTTGCGTATGTTACCAATCGC 48536 30 100.0 35 .............................. TCATCCCCTAACATAATATGCCCAACTCCTTCAAA 48471 30 100.0 36 .............................. CATAAATCAGTGTTTTTATTAACAAAATCAGAATCC 48405 30 100.0 36 .............................. GCGCGACCAAGGCGAAGCATATGCGAAGAAACTAAA 48339 30 100.0 35 .............................. AATTTAGCAGCAATCGCATTTAGCTCGATTTTCCC 48274 30 100.0 36 .............................. TTGGGTGTTGTTCAATAAACCCTTGTACAGCCTTCA 48208 30 100.0 37 .............................. CTGGTACAAATCATTAGATATTCGATATACCCAAAAA 48141 30 100.0 36 .............................. GAACAAAAAGGATTTTGCTATCAAGACACGTGACGA 48075 30 100.0 36 .............................. CGAGGTGCTGACACATGGCAAGGGTCACCATTCTTA 48009 30 100.0 36 .............................. CCGACCCTATACGCTTCATCCACAGCTGCTTTCGCT 47943 30 100.0 37 .............................. GCATTTGGGCACCTATCTTGCCGTGTTGAAATTGTCC 47876 30 100.0 37 .............................. TCTTCTGACCTTCCACTAATCCCTTATGCACTGCTTT 47809 30 100.0 36 .............................. AAAGAGGAGTACACGTTAACAACGGAAAGACTACTC 47743 30 96.7 37 ...............A.............. TTCTCTCACCTCATTTAAAACATTCATCCATGAATTG 47676 30 93.3 35 ...............A......G....... ACAGGAAGGTATGAAGTGGTTTGCAACGCAGTTTA 47611 30 90.0 36 ...............A.A..A......... AAAAAAAGAAACTCGAAAAAGAAGTCGAAGAAGCGA 47545 30 76.7 0 ..A............A....G..CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 97.5 36 GTTTTTATCTAAGTATTGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATTGTGCTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTCGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTATTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGGAGGCGAAAAAAATAAGTAAGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCGTAGACAGACCTATCGGATTTAAAGATGACTGCGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAACTCCTTTAACAAATGCAACGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAAACACTCGATATCCATCCCATAAAAAAGGATACAAATACTAAAACTACGAGAAAC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //