Array 1 720308-722715 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT732547.1 Paenibacillus bouchesdurhonensis strain Marseille-P3071T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 720308 29 100.0 37 ............................. GGATTACCATCGTAGTAAATAGAAATATGACCAAAAC 720374 29 100.0 39 ............................. TAGAACGGATCGTGGAACATTTGAGAAAGGGCGGCTATG 720442 29 100.0 37 ............................. CCATCTGTTCTATGATTTGAAGTATCTTGGGGTTAAA 720508 29 100.0 36 ............................. GTAGAAGCCTTTATGGAAGGGCACTACTTACATGCG 720573 29 100.0 38 ............................. CACTTAAAGGCAAGACAGAAAAAGATGGTGATAAGAAT 720640 29 100.0 37 ............................. ATTTGATTAAAGACTCTAGAAAATTCTTTCATTGGGA 720706 29 100.0 36 ............................. TGAAGTCATCGAGTGTGCCCTCGTTCCACGCATGTA 720771 29 100.0 38 ............................. ATCTATCGCATACTGTACATCGGATAGCATGCTTCCTA 720838 29 100.0 35 ............................. GCATATATGAGCTTCGAAAAAATCTGACCATTTAC 720902 29 100.0 38 ............................. GATGGTATTTCTTCCTGCTGCTCAAGCTGCTGCTCATT 720969 29 100.0 37 ............................. CAAGAGTAAAACCGCTGTCTACCCGATCTTTAAGCAC 721035 29 100.0 38 ............................. CATTTTGACGCTCGAACAGAGGGACGAGCTCATTGCTA 721102 29 100.0 37 ............................. TGACCAGTCACTACAAGTTTTTCTCGATTAAATGATG 721168 29 100.0 36 ............................. TCCCGAACACATCTACGCAATGTTTTAAGTGATAAA 721233 29 100.0 36 ............................. GATTTACCGACTGGGCAGCCTCGATCTTCTCATTGA 721298 29 100.0 37 ............................. TTTGCACCCCCTGAATGGCTTAACGCCTTCCCTTTTC 721364 29 100.0 39 ............................. TGGCTTATATCCATCAAAGAATTTGCTTTGTTTAGTCAT 721432 29 100.0 36 ............................. TGGTAAAGAAAAAGGAAATGTCGTTGTAAATGCAGC 721497 29 100.0 38 ............................. TACCTCTGCGTCCATTTCATCCGAAAGTGAGAGCAGCG 721564 29 100.0 38 ............................. GCGCTAGTTGCTGCGTGTGCTATTCCGTCTAATCCAGC 721631 29 100.0 38 ............................. AGCGCACGCCTTAACGCAATTGCACGACCGATATGCGC 721698 29 100.0 37 ............................. GCACATCTGCTATTTGCCTTATGCTTTTCCCGTCATC 721764 29 100.0 37 ............................. TTTTGTTAAAGAATCCCCACTTGATGCACTCATTTAC 721830 29 100.0 36 ............................. CGTGGTGTTTAGCAACGTCATCCTTGATCGTTCTCA 721895 29 100.0 37 ............................. CCCCTAGCAGCTCTGGATTGTCAAAGCGGTTGCCGAT 721961 29 100.0 38 ............................. TTGAATATGATCTTGCTACCATTCGGGAAACGTAGTTG 722028 29 100.0 37 ............................. CGCGATATTCTCGTAGAACACCGCCGAGCGATTCGTC 722094 29 100.0 36 ............................. TAATCTGACGCTCCTTATCTTCAATAACCTCAATAT 722159 29 100.0 38 ............................. GAATGATAGCCCGATCAGTGCTAAAGGCAGCCAAGCCT 722226 29 100.0 37 ............................. CGTAGTCCCAGCGTTCCTCTGCATCTGCTTCAAGGTG 722292 29 100.0 36 ............................. GTTAATCGCAGATCGAATCGCAAAAGAGTTTACGGA 722357 29 100.0 37 ............................. TCGGAAGTACGAACGCAATATATCCGCCCGGCTTAAC 722423 29 100.0 38 ............................. TGTTGATCGTAGAGGGACGTATACGCGACCTTCAAGGA 722490 29 100.0 37 ............................. GTAGCACGGGCGATCGTTGCTTTGTTTATTCCTTTGG 722556 29 100.0 37 ............................. AAATCTCGCAAACATCCCTATCCCCCGGCTGGATCTC 722622 29 100.0 36 ............................. TGGAAACAGTAACTTGGATTGTCGTTATTGCAGCAT 722687 29 96.6 0 .................C........... | ========== ====== ====== ====== ============================= ======================================= ================== 37 29 99.9 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : TGTCCTTGGGCACCACGATGTTATATAGCTCTGCATATGGACTTAGCATCAGGGTTTGCTGTTGCTTAATCATCCGCTCACCTACTCTCAATGATACCTAAATTATAAACGAAGATAGGCGCAGTTTTCTCAACTTCTTGAGAAAACTACGCCTCTTTTTAAATCAAATGAACTTTTTCAGTGGCCTCGCCCCTTGGGGGTGGCGTTTTTTGTGGGGCTAAAACTAGACAGATAAGTATTTATTACGTACGATAACATCAAGACTAGCGTGATGTCCTAGTTAGAAAGTATAGTTGAAAATTATTTGATAAATGCGAGTGAAAACAAAATGCAGCGATCGAATATTTTGTCGAATCGGCTGCAGCCTTTGTGTAGTAAGGCTTTAAGTAGTTTTTTACGCTAGTGCTAATTTCCAGATTAGAGGTTCAATGCAAAATGAAGATTTGCCCCTGACGAAAAGGCTAGACGTATCAATGGTTTTAGCTTATAAAAATTCGGGG # Right flank : GTTATTAATTTTATTAATGGATATGAAACGCAGCGGGACATTACACTCTATTATCATAATATGATACAACCCCTCCCTTAAACTTCCCAGAATTGTTGTAAATTGTAGCTTTTAGGTCTTGCTCTATGTCGCTTTAAGTAGTAGATTGGAACTGTATGTATTGTTATAAATTGGTGAATTTGGAGGTGGAACATGAGACTATCAGTGACTTATCAGGTAGAGCGAGTGCCTCTAGGTTATCGAATGACAGTACTATCCTTGCTAAAAGAAGCGCTGAAATTAGCTAATGAAGCATATTATAAAGAGCTTTATGAGCAACGTTCTAAAGAAATGAAACCGTTCTCTACTGCGGTATTTCTCAAGGAATTTACGTATAAAGAAGATGAAATCTTACTGAAAGAATTGTCAATTACGATCAGTTCAGCAGATATGGAATTTATGTTACACCTGTTTAATGGACTACACCAACTTAGAAGCTATAAGACTGACGGTCAGGAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 731525-732343 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT732547.1 Paenibacillus bouchesdurhonensis strain Marseille-P3071T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 731525 29 100.0 38 ............................. AACTAAAAAGGAGCCCTGGAGATAATCCCCAAGACTCC 731592 29 100.0 36 ............................. ATACCAATCCGTATAGTGATCAAAGAGATACGCTCC 731657 29 100.0 37 ............................. ACAAGATCGTCACATATGACGAACGCATCAAGGCAGC 731723 29 100.0 37 ............................. TGTCTCAGCGTCTACCATGCTCCTAATCTCTTCCCGG 731789 29 100.0 38 ............................. GATTAAAATCCCCGCTAGATACGTAGTAAAAATCCCGA 731856 29 100.0 35 ............................. GCGCTTGTGCTGCTAAAACCTCTCTTTTCAAATCC 731920 29 100.0 35 ............................. ATGCTTCAATCATCCTTCCCAAATCCCAAGGCAAA 731984 29 100.0 38 ............................. GTGCTCAGCTTATCAGGGTGCTTGAAAGTGTCAAGGAT 732051 29 100.0 37 ............................. ATCAAAGAAGAAGATGCATCAAAAAATCTGTTGAGCT 732117 29 100.0 37 ............................. ACTATATACCGCTGATAGTTAACAGGTCAGCTGTCAA 732183 29 100.0 37 ............................. ATTAGAGAGGAATGATTATGTGAATCAATTAGTTCAA 732249 29 100.0 37 ............................. ACCATAAAGCCGGGAGATAAGGTGAAACATAAAGAAT 732315 29 82.8 0 ..............C..C....A....CT | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 98.7 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : GCATGTCATTGGCGATGAAAAATATAAGCCTTTTAAGGCATGGTGGTAGATAGACATGTTTGTAATTATCACATACGATATAGGAGAAAAAAGAGTAGGTAAAGTCTGTAAGAAGCTTCGAGAATATTTGGATTGGACGCAGAACTCTGTGTTTGAAGGCGAAATCACCAAAGGGAAATTAACAAAATGTTTAGCTGAATTACGAGATATCATGGATGATGAGGATTCAATATATTTGTATAAAGTTGAGAATCCGAAAGCGATTGTGAAAGAGGTCATTGGAGAAGATCGTTCCTTCGATCGATTGTTTTTCTAGAGCAATGAGAAAAGTGCAGCGATCGATTGTTTTGTCGAAATGCCTGTAAGCCTTGCCAGATAAGGGTTAAGAGCGGTTTTCACATGAAATGAGAAATTCCCATTGAGGGTTCAATGCAAAATTGAAAAATGATGAAGTTGAAAAACCTTGTTATCACAAGGCTTTTACCATCTCGAAAGACGGG # Right flank : TCCAAGTGAACAACCCTCCCCAAACAAAAAGGAGGGCCGAAGCCCTCTCAATACCCTACACTTACTCCACCGCCGCAGGTCTCGTTACCAGCAAATCATGCCCCTCGTGTTCATCATTCTCTTTAACCTTCATGGACGTACTGCTGGATGTTTTCATTCTCCATTTCATATGCTCAGGATAACCATAGGTTCCATGCTCGCTCAGGTCGAGACCCATCACTTCTTCTTCCTTCGTTACACGCAACCCCATCAGCTTTTTCATGCCCCAAAGGATGGAGAAGGAAAGCGTAAATACGAAAGCAAAGGTGCCGACAACTCCTAAAATTTGCACGCCTAATTGGCCCAGTCCGCCGCCGTAGAACAGACCTGCTTGACCTACCCCTGTGATTCCAACTAGCTGCGGCGTGGCGAAGAGACCTGTAGAGATGGCTCCCCACACCCCGGCAATACCGTGTACCGAAGCAGCGGCGATTGGATCGTCAATGCCTGCCCGTTCAATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 554287-554584 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT732548.1 Paenibacillus bouchesdurhonensis strain Marseille-P3071T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 554287 32 100.0 38 ................................ CTCGACCTACAGCCAACTTGGCTAGGTGGCGAGACAAG 554357 32 100.0 34 ................................ GGTTACCCTAAAATGATCAAGAAGGATCAAATGA 554423 32 96.9 32 ..............A................. GCGCCAGCAATGGGCAGATGCATGTGGTTAAG 554487 32 96.9 34 ...........C.................... TATAAAGCAGTTTCCAAGGCTGGGGATACGTACA 554553 32 96.9 0 ..............A................. | ========== ====== ====== ====== ================================ ====================================== ================== 5 32 98.1 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CCTATGACGATCTGTTAGCGGCGGGTTCGATGAACGTGGTTAAAGAACGCGGTCAGCTTCGTCTAGAGGGCAAGGAATACGTTGTTCAAGACGGAGACATTATGCATTTCCGTTTTAATGTGTAGGTCAGAGATCACAATAAATGTAATAGAAAAGCTTGCCGAGTCGGCAAGCTTTTTGTGTGTTGTTGCGAGTCCAGACAAGGTGCGTCTTCTAGCTGGTGAGAGTTCGGCCAGGGGAGGAATCAAGTCCCCCGTAGCTTGATACTTGCGTATGGAGAAATCTGTACGTAGTATATATACTTAAGGATAAGCTATATCCCAAAGCAACTGGTGCGAACCCCAAGCTCACATGAAATCCCTAGGGGATTCGCACCTCGCATTGCAACAGGGCGCAGCGTCATTATGGTGTAAAATACAAGTGAAAAAAGCCCTGAAAAAAATCGGTTCGCAATTTTCGGCCTGTGAGCCCTTGATACGGCTGGGCCTACAGGTGCCGCA # Right flank : TAGAAACGAGTGCAGCCGGGGGCATTGCTTTGGTTTTTAGAGAGTATGCTAAGCATGAGATCATAAAGAAGAGTAAGCATCTCGTCCAAGATGGTTGAATCAGTGAGTTAGCAGAAATTGAGGTGAACGGCGAGAAACAATACATCTTCATCGAAGGAGCCGATAGAACGGAGCCGTTCTGTATGTTTATTCATGGAGGGTTGGGCTCTCCTTTTTTTCTGGTGTAAGTGCCCGTGCCTTGTATTCAGAAATTACAGAAAACTGTGTAGCAGTATATTACGATCAAACAGGAGCAGGGAAAAGCTAAAAGAGGCTCGCAGTCAAAGCAATGCGGAAATTACAAAAGCTGGACAAGGCCGGGGAAGCCCCCTATTTTGGAAAACGAGAGGATCATTCAGCACCCTCATTTATGAGTACAAAGGACTCAATATATTAGAATAAATTTCTTTGAAACTGTCCTACAATTCAAGCACCTGTATATGTCATACAGGGCAGACATG # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTAAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1897952-1899050 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT732548.1 Paenibacillus bouchesdurhonensis strain Marseille-P3071T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1897952 33 97.0 34 ................................C AAAAAATTCCCGGCTATATGTGATCTCAAAATTA 1898019 33 97.0 33 ................................C TCCTGTACCGATTCAAATCAGCGGCGTAATTGA 1898085 33 97.0 31 ................................A TTAAATAAGCCATGGGTTATTCCATGGCTAT 1898149 33 97.0 37 ................................A TTCCGCAATGACCATCGACCCAATACCATTGCGTTGA 1898219 33 100.0 33 ................................. CTAAGCTGCTCCTCGTCTTGCATTTCTATATAA 1898285 33 97.0 33 ................................C GCTATGCGTGTGGGTAACCATTGGAATATCACC 1898351 33 100.0 36 ................................. AGACCTAATACTAGAGAGCGTGGCGAATTCCCTAGG 1898420 33 100.0 33 ................................. TTTTAGCAGGGAACAGAATTGATCCCAAGTAAT 1898486 33 97.0 31 ................................A AACCGTGGATAGTGTTGAGAAAATCTATATC 1898550 33 100.0 34 ................................. ACGTGGCGAAGAATTAAATGCAGTATTTGAAGCT 1898617 33 97.0 36 ................................C TGTACCAAGCGACCCCGTCGGTAGAACTCAATTAAA 1898686 33 97.0 34 ................................C TTCTCTGGATAAAGGGATGCCAAGGATTCTTGTA 1898753 33 97.0 33 ................................A GATCTAAGATCGAAAAGGATCCATCATACGAAA 1898819 33 97.0 33 ................................G CTGATCGAGCAGGAATATAGCTTGTAGCTCTTG 1898885 33 97.0 35 ................................A CATCACGATATGCGCTGGCGCTGGTAGGTGGTCGC 1898953 32 93.9 33 .......-.....T................... TCGCGGATTGTGTAGTCTAGTTCGTTGTAATCG 1899018 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 17 33 97.7 34 GTCGCATCCCTCGCGGATGCGTGGATTGAAATT # Left flank : GATGAATATCCTCCAATTCTATGGAAGTAGGTGTGAGATATGCTAGTATTAATTACGTATGATGTAAGTACGGTGAGCAGTGCCGGGCAACGGAGATTACGGAGGGTATCCAAAGTGTGCCAAAACTATGGACAGCGTGTGCAAAATTCAGTATTTGAATGTGTTGTTGATGCAGCTCAATTTACAACCCTAAAGCTAAAGCTTATGGATATTATTGATCCTGACCAGGACAGTCTGCGTTTCTATCAGCTCGGGAATAACTATAAGAATAAGGTTGAGCACATCGGTGTCAAAGAGTCACTAGATTTGGAAGGGCCCTTAATTCTGTAAGGTGCGAATGTGAAGCGAACATGATTTTCCAGGGACATTCGCACCAGGAAATAAACTTAAATTATATATAATGGAAAAATATACATGAGAAATATTTTAAAAAATAACTATTATTAGTAATTTTATTCTTGTATTTGCGATTATGGGGCCATTATACCCTAAAAATCGCT # Right flank : TTATTCTATAGTAGATTTTATTACCCATTTTCAAGCGCTTCGTTTGCGATTTCCTTCATGACAAAATAGTCATCTTCAAATGAATCAGAATCATATTCTTGAATCTGTCTTAGTACTTCAATAGTGATTTCAAACATTTTTTGTTCAATCATGAGTCCCCTACTTCTTAAAATATGTACTTAACCCTAAAAATGATATTTTGTTAAAAGGTGCAATTTATCGTTGTGAAATTAGATAAATATGGTATTATGATTGCGTCGGCCGACATAGTATGATAAATGGAGGGAAGTCAATGAAGTCTATTTAAGTGGATACTCAGTTTATCGTTATTAGTACTGATAGCGCCTTTGCATCCACAAATAACTTCTGCTGCTGATAGCGACCAAGACACTTTAGTCTATAATTTAGATGACTCATTTGCCTCTGTTATTGACTCTGTTTATACTATTGAATCCCACTTAAGCACTCCAGGTAACATGGTTATTTTTGAAGGCGGTGAA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //