Array 1 68668-65162 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPI01000050.1 Dactylosporangium sucinum strain JCM 19831 sequence050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 68667 30 93.3 31 ............................TC ATTGCAATACGGCTCCACGTACATGCCGTTG 68606 30 96.7 31 .............................C CGGGGTGGGAGACCAGGTTCGGCTACCTGGA 68545 30 96.7 31 ............................C. ACGTCGCGCCGCTGCGGTCCTCCATCGGCCA 68484 30 93.3 31 ............................CC GCACCGCGAACCCGTCTGGCACTTCGGTGCT 68423 30 93.3 31 ............................CC AGAGCGGCACCACGTCGGTCGACAACGACGC 68362 30 96.7 31 ............................A. TCGGTGTCGTTGTAGTAGTAGAGGAGCACGT 68301 30 96.7 31 .............................A AAGGACCGCAAATGGCGCTTCTAGATAAGCT 68240 30 100.0 31 .............................. CGCAGCCCGCCGGCACGCCGGTGTCGCTGTG 68179 30 96.7 31 ............................C. CGATCGCGGCGAGCTCGAGGCCCCACGCGAA 68118 30 93.3 31 ............................CC GGTGGTCATGAGGTCGTGCATCTCCTCGTAG 68057 30 93.3 31 ............................CT GCGTGGGCACGCTGAGCAGGGCCTCGGCACC 67996 30 93.3 31 ............................CT CGCTGCGTGCGGGCTGTTCTACCTGCGCGAC 67935 30 96.7 31 .............................T TGAGCACGATCTCGACCTTTTCGCGGGCGTC 67874 30 96.7 31 .............................C CGGCTGTACCACAAGACGGCCGTGGCGACGT 67813 30 93.3 31 ............................CA ACCGGTGCGTCTACCAGGGGGCCATCTTCGG 67752 30 100.0 31 .............................. GAGCCGCTGTGACGATCCCCGACCTGACCGT 67691 30 96.7 31 .............................C ACGGCATCCCGTGCCCGAGGTGCAACGCGTT 67630 30 100.0 31 .............................. TCCGAGTGCTCCTCGGCGACTGCTTGCAGAC 67569 30 93.3 31 ............................CA CCGTCTGGGTGGCCTCCGGCCCGGCCGAGGT 67508 30 93.3 31 ............................CT GTCAAGGGAGAGTTGACCGTTGACCACCCCT 67447 30 100.0 31 .............................. AGATGACGACCGGCAGCGTGTTCGTGTTGCC 67386 30 96.7 31 ............................C. GCCAGGCCGTGGACCGAGACAACTGAAGGAG 67325 30 96.7 31 ............................C. AACAGTGAAGGGAATCCCCCTGTGAGGAAAC 67264 30 93.3 31 ............................CT ACGGGCAGATCGTCTACAACGGCGTCGACTA 67203 30 96.7 31 .............................T CCCGTGGGATGACGTGAGTCCGCGGGCCGCC 67142 30 100.0 31 .............................. GCTGACCGCGCCATGGACAAGCTGATCCGGT 67081 30 93.3 31 ............................CT GGCGTGCGGCATGACGTGCGCCGGCAGCGTA 67020 30 96.7 31 .............................T GCGCGGCGCGATCACCAACGTGTCCGTCGGG 66959 30 93.3 31 ............................CA CCACACCGGACCGGTGCCGGGCGTGCTGGAC 66898 30 96.7 31 ............................C. GGTGGGCCGACATTGGCGGAGCCCAGGTCCC 66837 30 90.0 32 ......A.....................CC GACGGACCGGCCAGCACCTCGGCGCCGGCATC 66775 30 93.3 31 ............................CA CCAAAGGCCGGCACCCTCAGCCCCGAGGGTG 66714 30 100.0 31 .............................. GGCGGGGCTCCACGTCGGCGATGGCCGGGCG 66653 30 96.7 31 ............................C. CCTGCGCGATCTGCCGTTCGCTGCACTTGCG 66592 30 100.0 31 .............................. CTCGGCGCCGGGTGGTGTCGTGGCCGCCGAC 66531 30 96.7 31 .............................C TCGCGGTGCAGCGCGCCCAGGCCGCGAACAA 66470 30 96.7 31 ............................T. CGCTCAATGGCCTCACGCACGAGCTTGATAA 66409 30 96.7 31 .............................A CCTACCTCGACACGGTAGCGCCGCGGAAGAT 66348 30 93.3 31 ............................CT GCGGCGGCACCAGCAGCCCGTTCATCGTGGC 66287 30 100.0 31 .............................. CGCGCGAGACGAGGTTGTACAGGTCTTCGAT 66226 30 96.7 31 .............................T CGCGGACAATCGCCCAGATCTCCGGATGCGT 66165 30 93.3 31 ...........T.................A CGACGACGTATAACGTGAAGCAGTACACGCT 66104 30 93.3 31 ............................CA GAACCCCCGGAGGGGTTCCATCACTATGCGC 66043 30 96.7 31 ............................C. CCATCTGCACGGTGTCGCCGGTCGGGTCGAC 65982 30 96.7 31 ........................A..... TCGAGCTGGGCAGCGACCAGGGCCAGCAGTG 65921 30 96.7 31 ............................C. TCGTGGCCTGCCTCGATCCGTCCGGCGTGCT 65860 30 96.7 31 ............................A. GACTGAGCCGATGAGTGAGCACCCGACGCAC 65799 30 96.7 31 ............................T. GCTCGCGTGCGCGCGCGCACCGGGATACCAC 65738 30 100.0 31 .............................. CCCACGAATCCCATTCGGCGCCGACCGACGA 65677 30 93.3 31 ............................CC AAATGTCCAACATCACCACGCGACGCACCCT 65616 30 93.3 31 ............................CC GGTCGCGCTCGCGGCGGGCAGCCCGCTTCGC 65555 30 100.0 31 .............................. ACCGGACGCTGACCGTCACCGAGGCCCGGGA 65494 30 96.7 31 ............................C. CTGGCGGCGGGTCCGTCGACAGCGCGGCAAT 65433 30 93.3 31 ............................CA ACGCTTTCACGACGCTCACGACAACGTTTGT 65372 30 96.7 32 .............................C GCTGCGGCGAGGAGGCGGCGGCGGGTGCCTGT 65310 30 96.7 33 .............................C GCTGCGGCGCTGGCCGGGCGACCTCGAACGGCT 65247 30 86.7 26 .C..C.................C......C AGCTCACGCTGACCGGCGACCTCGGG 65191 30 63.3 0 CA...GT.AT.C.G..T...........CC | ========== ====== ====== ====== ============================== ================================= ================== 58 30 95.3 31 GTGCTCCCCGCGCACGCGGGGATGGTCCGG # Left flank : CCGACGAGCTCGCACTCTGGGACGATCATGGCTTCGAGGTAGCCGCCGGCCGTAACTACGCCGACGGCGAGGAAATCGACTTCTGATGACCGTCATCATCCTCACCGCCTGTCCACCCGGACTCCGCGGTCATCTCACTCAATGGCTGCTGGAGATCTCCGCCGGCGTATATGTCGGCCACATCAGCGCACGCGTGCGCCGCCGCCTTTGGGCACGAGTCAAAGATCTGGCCGGCCCCGGCCGCGCCCTCATCGTCTACCAGATCCCCGGCGAACAACGCCTATCCTTCGAAGCCCACGATCACCACTGGACGCCCGAAGATTTCGACGGCATCACCCTGATCCGGCGCCCCGCCAACCCGGTCTTCAACCCGGCGATGCCGTCCGGCTGGAGCAACGCCGCCCGGCGCCGCCGATACGGCCGCCGCCAACAGCCAACCCGGCGGCCAGCAAGTGAATAGAATCGGCCGAGTGGATCTATAGCGCAGCAGGTCAACTAGT # Right flank : ACATCGACCCGGCCTGCGCTTGCCCCTTGGCGGGTAGAGCAACAACTGAAAGAGGTTGATCCGAGTTCACCTGTCGGTGAGGCCGCCCGGATACTCTGCGCTTGAATCTGCATTGCCGAATTACTCAACACCCAGTTGGTTGGTCGTCTCAAGGCGATGCGCCTCGCCGGCCAGTAGTGCCAGCGCCCGAGCGACCTCGTTGAGGTCTGCGCGGACGTAGGTCGACGTAGTCCCAGCGTTGGATCGGCCGTTGTGGCCGGCATACGCGCGGGCGACAGCGTAGCCGAAGCGGCGTTCGACCCAGGTCAGGGTCGTGTACCTGATCCAATGGGTGCTGACCTGCTGCGTCGCCACCCAGGGTAAGTGCTTGCCGAGCCGCTGCCACAGATAGTCGTAGCGGCGTCGGGTGACTGGTTGGCCGTTGCGGTAGCGCAGCAGCTGGCTGTGTGCATCGCCGTTCGCGCCGCGTTCGTCGCCATGGGCGATCAGATGGTGCATCA # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84444-86370 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPI01000050.1 Dactylosporangium sucinum strain JCM 19831 sequence050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 84444 29 100.0 32 ............................. TGTCTATGGCTGGGCGCCTGGGGCGTACGACC 84505 29 100.0 32 ............................. GTCGACGTGTTGCTCTTGTTGGGCAGCGAGCC 84566 29 96.6 32 ............................G CTGAAGATCGAGCCGGACAAGTCGATGAAGTA 84627 29 100.0 32 ............................. CACCGCCAACTCAAGGATTCGGCATGCTCGGC 84688 29 96.6 32 ............................T GCGGAGGTTGGCCTACCGATTCAAGTACGCAA 84749 29 96.6 32 ............................G CGGGACACGCCGGTGTACGTCGCCACGGCGAT 84810 29 96.6 32 ............................G CCGCTGCTGACGGCCGGAGCGGGGGTTCGGCG 84871 29 96.6 32 ............................G TTGCTCGTCGGGGGAAGCGCCACCCGGAGGGG 84932 29 100.0 32 ............................. GGCAGTAGAACTGCTATTCTTTGTCACAGCGT 84993 29 100.0 32 ............................. TCGCCGGCGACGTCGACCCGCTCGACCGCCTC 85054 29 100.0 32 ............................. GTCCACTGTGGAGCGCGTGACCAAGGAAGCGC 85115 29 100.0 32 ............................. CTGCCCCACACCCCGGACGGCGCCGACCTGCA 85176 29 96.6 32 ............................T GTGGAGTCGCCGGCGAAGCCCGCCGGCGCCGT 85237 29 100.0 32 ............................. GACAGGTGAGGGTTCCGGTTGGTGTCTGCCGC 85298 29 100.0 33 ............................. TTCCCAGCCTTCTCCGGCAACCTCGCCCGGCCG 85360 29 96.6 32 ............................T ACGTCTGCCGAGCCGGCAGCGCTAAGCCGTTT 85421 29 96.6 33 ............................T TGTCGTACAGCTTGGTACCGAAGAACAGGACGT 85483 29 96.6 32 ............................T CGGCCGCCGCAGCGGCCGGATCGAGGCGCACG 85544 29 96.6 32 ............................T GGCCCCGGGACGGCCGCAGAGCGCATCTCGCG 85605 29 100.0 32 ............................. TCGTCAGCGCGAGAGCAAGCCCAACGCCGCGT 85666 29 96.6 37 ............................T CCAACGACATCAAGCGGATCTGCCGGCGGCTCGCGGC 85732 29 100.0 32 ............................. TGGTGGGCCTCGCCGGCGCGGACACGCCACTC 85793 29 96.6 32 ............................G GCCATTGAGCTGCTGATACATGGGGAGGGGCG 85854 29 96.6 32 ............................G GCGCTCCCACGCCGCCCACCAGAAGCCCGGCT 85915 29 96.6 32 ............................G GGGGTACGTTCGAACACGTGTTTCAGGAGAGG 85976 29 100.0 32 ............................. TGGCGGGTACCGACAGGAACGAGTAGACGTCG 86037 29 96.6 32 ............................T CCCGGTGACCCGCCGTTCGCGGTGGCAGTCCC 86098 29 96.6 32 ...........................A. GACCCGCCCGTGCCGCCCGCGCCGGTCGTGGT 86159 29 100.0 32 ............................. GAAACCGGCGCTGCCCTCGGCATGAATCGGCG 86220 29 100.0 32 ............................. GAGCTTGCGGAGCCCGCTCGTGGCGCCAGTAC 86281 29 96.6 32 ............................G CGCGGCGGCGCCGCCGACAGCCAGGCCCTCCC 86342 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 32 29 98.2 32 GTCGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : AGTCGCCACAACAGACGAAGAGCTGCAGCCCGACTTCCAGGCACTCCGTGTCGACCCGGACCGGTTCGACCCCTGGTTCGTCGCGGGAGCCCTGTCCCGCAGGGACAACATCCGCGCCGCGAGCCGCACGTCCACCGGCGGAACACCCCGGATCGACCCCAAACGACTAACCATTCCGGTCCTCGCCCTGCACGAACAACAGCAGTACGGCCGAGCGTTCCGCCAACTCGCCGACTTCCGCGCAGCCCTCGAACACGCCGGAGCCACTGGTGCCGCACTCTCCCACGCGATCAGCGAAGGCCTGACCTCAGGCACCCTCACACCCAACTGACCGAGACGACCAACGCCCGAGCCGACCGTCGTGGTGGCCGGCCAACCCGTGGTTTTTCGCCAGGCCCGAGTGCGACAATGCTTTCCCAGTCATCGCACTGTTGGATCGACGTCGTCAGCAAGTGAACAAAATCGACCATCTTGATCTTCAACGCACCAGGTCAGGAAGT # Right flank : CCAGCCCGGAGGATGGAACGCACGGTGAAGATCGTCGTCCCCGCGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGCCGACGTTGGCGCGGAGCTGGGGGATGTCGTCGTCCCCGCGCATGCGGGGGTGGTCCCGAGGGCAGCAGAGGCAGGTCGACGCAGATCAGGTCGTCCCCGCGCATGCGGGGGTGGTCCCGCCGTGCTCAGGAACACGTTGGCGGCGTCGAAGTCGTCCCCGCGCATGCGGGGGTGGTCCTCCGTCGACCATCGAAAGGTGCGAAGAGCGGCCGTCGTCCCCGCGCATGCGGGGGTGGTCCACGAGCCACATCCCCTGACAGGCTCGTTGAGGTTCGTCGTCCCCGCGCATGCGGGGGTGGTCCTCCTGAGTGAACCACACGGGGAACACGCCGTTTGTCGTCCCCGCGCAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 86548-88713 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPI01000050.1 Dactylosporangium sucinum strain JCM 19831 sequence050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 86548 29 100.0 32 ............................. GAGGGCAGCAGAGGCAGGTCGACGCAGATCAG 86609 29 100.0 32 ............................. GCCGTGCTCAGGAACACGTTGGCGGCGTCGAA 86670 29 96.6 32 ............................T CCGTCGACCATCGAAAGGTGCGAAGAGCGGCC 86731 29 96.6 34 ............................A CGAGCCACATCCCCTGACAGGCTCGTTGAGGTTC 86794 29 96.6 32 ............................T CCTGAGTGAACCACACGGGGAACACGCCGTTT 86855 29 96.6 32 ............................G GTGCATCTCACCCTAGAAATGGGCGAGTCAGT 86916 29 100.0 32 ............................. GGAAGCTGAGCGGCAAGGCTTCCAGGTGCGGC 86977 29 96.6 33 ............................G TCATAGCTTTCAATGACGTACTTGGGGTCGGGC 87039 29 100.0 32 ............................. TCGAACACGTACACGAGATCGGCCTGCCCGAG 87100 29 96.6 32 ............................G CGTTACGCCGTAATGGTTCGGTGGGGCAAGGC 87161 28 93.1 32 .....................-......G TGGCTGTGACGTGGCCGGCTTCGACGGCCGGT 87221 29 100.0 32 ............................. TGGTCCGTGAACTCGAGGCGGCGCGGCAGAGC G [87243] 87283 29 96.6 32 ............................G GAGGCGGAGCGAGCCGAGGCGCGGCGAGCCGC 87344 29 96.6 32 ............................G TTCAGGGCAGTCCACACGCGGAACATCGTGAG 87405 29 100.0 32 ............................. ATCAACTTGTCGATGTAGACGGTCGTGGTGGC 87466 29 96.6 32 ............................G ATCTTGACGTCGATCATCTGCAGCGTTTTCAG 87527 29 96.6 32 ............................T ACCCCGGGACGCTCCCCCTCGCCTCCTGAGCC 87588 29 100.0 32 ............................. TCGACGCGACGGACAACGGTCTCGTCGGTGCG 87649 29 100.0 32 ............................. GACGATCCCGGGCGCCGTGGTGGTCCAGCCAA 87710 29 96.6 32 ............................T GTCCAAGGACAAGCTGATTCTCATCAGCATCA 87771 29 100.0 32 ............................. GCGCCGGCGCGCACGACCTCGGTGTACGGCCC 87832 29 100.0 32 ............................. TACATCGCGTTCGCCGTCAAGCCCAGCACCGG 87893 29 100.0 32 ............................. CACGGGTCGCCGTTGTCGTTGGCGGGGGTGAG 87954 29 96.6 32 ..............C.............. GCACTGGGCGTGGCGCAGCAGACGGCGCCGCT 88015 29 96.6 32 ..............C.............. GCTGGATCACCGCGGCCCGGGAGTCGGGCAAG 88076 29 96.6 32 ..............C.............. TGGCACCGAGATTCACGGTGCGGGTTGCGTAC 88137 29 96.6 32 ..............C.............. CTCGGCGTGATCTGGCTGGCGGGAGTCGTCCT 88198 29 96.6 32 ..............C.............. CGGTGTACGTCTCGTCCCACGTCGGGTTCTGC 88259 29 96.6 32 ..............C.............. TCGTCGACGTGGCAGGCCCGGATCAACACCTC 88320 29 96.6 32 ..............C.............. TGGCGGCTCAACCTCGGCCGCACCCCCGGCCG 88381 29 96.6 32 ..............C.............. CAAAAGCCCGTCGCCCTGGCCGTCTGGGCGTT 88442 28 89.7 32 ..-...........C.............T GCCATTCACGGCCACCTTAGCAAGGACGGTTT 88502 29 96.6 32 ..............C.............. AGCCGTGCGCAAATTGGCGTGGTGCCGATCCT 88563 29 93.1 32 .............GC.............. CGTGAGCCCGCCGGCCCCTGCACAGCAATGTG 88624 29 93.1 32 ..............C.............G TTCAGGAACACGAGGGTGTAGCCGGAGATTCG 88685 29 93.1 0 ..............C.............G | ========== ====== ====== ====== ============================= ================================== ================== 36 29 97.1 32 GTCGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GCATGCGGGGGTGGTCCTCCCGGTGACCCGCCGTTCGCGGTGGCAGTCCCGTCGTCCCCGCGCATGCGGGGGTGGTCACGACCCGCCCGTGCCGCCCGCGCCGGTCGTGGTGTCGTCCCCGCGCATGCGGGGGTGGTCCCGAAACCGGCGCTGCCCTCGGCATGAATCGGCGGTCGTCCCCGCGCATGCGGGGGTGGTCCCGAGCTTGCGGAGCCCGCTCGTGGCGCCAGTACGTCGTCCCCGCGCATGCGGGGGTGGTCCGCGCGGCGGCGCCGCCGACAGCCAGGCCCTCCCGTCGTCCCCGCGCATGCGGGGGTGGTCCCCAGCCCGGAGGATGGAACGCACGGTGAAGATCGTCGTCCCCGCGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGCCGACGTTGGCGCGGAGCTGGGGGATGTC # Right flank : GTTGCGGCGGAACACCTCACTCGCGTGCGTGATGTCGTCCCCGCGCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTCCGGCCATCCACTGGCCGCAGATCCGGGAGCTGCTGTCGTCCCCGCGCACGCGGGGGTGGTCCAAGCTCCCCCACACCCCTACGTCACCCGGCGTCGTCGTCCCCGCGCACGCGGGGGTGGTCCGGATGCTCTGCACAAAGAGGGCGGCTACGCCTCGTCGTCCCCGCGCACGCGGGGGTGGTCCCTGTCGATCGATCCACCGCATGGTGAATGTGCCGTCGTCCCCGCGCACGCGGGGGTGGTCCGTGCTGGCAGATCCCGGCCAACAGCGGCGTCTGGTCGTCCCCGCGCACGCGGGGGTGGTCCCGGGTGCGGACTTGGGCGGGTCGACGGCCGGGAGTCGTCCCCGCGCACG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : GTCGTCCCCGCGCACGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 88892-89776 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPI01000050.1 Dactylosporangium sucinum strain JCM 19831 sequence050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 88892 30 93.3 31 ............................AA GCTCCCCCACACCCCTACGTCACCCGGCGTC 88953 30 96.7 31 ............................G. ATGCTCTGCACAAAGAGGGCGGCTACGCCTC 89014 30 96.7 31 .............................T GTCGATCGATCCACCGCATGGTGAATGTGCC 89075 30 93.3 31 ............................GT GCTGGCAGATCCCGGCCAACAGCGGCGTCTG 89136 30 100.0 31 .............................. GGTGCGGACTTGGGCGGGTCGACGGCCGGGA 89197 30 93.3 31 ............................GT GCTGGCAGATCCCGGCCAACAGCGGCGTCTG 89258 30 100.0 31 .............................. GGTGCGGACTTGGGCGGGTCGACGGCCGGGA 89319 30 100.0 31 .............................. ACACGGCGTACGAGCGCTCGGAGAACGCGTC 89380 30 93.3 31 ............................TC AGCACATCGACGTCGTGAGCCAGCGCGACAT 89441 30 96.7 31 ..........T................... GGTCCGCGGCCACCGCGTCACAGCCGGGGAT 89502 30 100.0 31 .............................. GTGGCGCACCGGGGGCCTCCGCTACGCAGAG 89563 30 93.3 31 ............................GA TGACCGGAGCGCGGCTCGTTCCTGAGGCCTC G [89585] 89625 30 93.3 31 .C...........................A TCCGCACGGACCTGGTCCAGCTGTAGCAGTT 89686 30 83.3 31 ......G.............TT......GC CGGCGGGGTGGTGCGAGGTCGGGTGTGCCCG 89747 30 93.3 0 .C..........T................. | ========== ====== ====== ====== ============================== =============================== ================== 15 30 95.1 31 GTCGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GCACGCGGGGGTGGTCCCCAAAAGCCCGTCGCCCTGGCCGTCTGGGCGTTGTGTCCCCGCGCACGCGGGGGTGGTCCTGCCATTCACGGCCACCTTAGCAAGGACGGTTTGTCGTCCCCGCGCACGCGGGGGTGGTCCCAGCCGTGCGCAAATTGGCGTGGTGCCGATCCTGTCGTCCCCGCGCGCGCGGGGGTGGTCCCCGTGAGCCCGCCGGCCCCTGCACAGCAATGTGGTCGTCCCCGCGCACGCGGGGGTGGTCCGTTCAGGAACACGAGGGTGTAGCCGGAGATTCGGTCGTCCCCGCGCACGCGGGGGTGGTCCGTTGCGGCGGAACACCTCACTCGCGTGCGTGATGTCGTCCCCGCGCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTCCGGCCATCCACTGGCCGCAGATCCGGGAGCTGCT # Right flank : TGTGGACGATTCGGTCGGGCAAGACGTCGTCCCCGCGCACACCTACCGCGTCCGTTGCCGACAGCGTGCCTTCAGACGCATAACTGACCCTTTGCGCAATCTGGCCCACGCGCAGACGCTCATTTGCGCATGCACTCCATGTATTCGTGCTCACTCGCCACTTGAACCCACCCTCGCCGATCTGCAGGCTGACCTGCGCACACAGCAGCAGCGACGACCCTACTGGGCACCATCTAGTGTTGCGTGATGCTGGTTGCGTTATGTCGGGTCGGTCGTCGATCCTGGTGTGATGCTGACCGAAGGCCAGCT # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //