Array 1 643-126 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOHM01000066.1 Corynebacterium canis strain CCUG 58627 Scaffold66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 642 29 100.0 32 ............................. CGCCGTCCTGACCAGCCGCCCGGAAAGCGCCG 581 29 96.6 32 ............................T GCTCCCCGAGACCCGTACCCACCTGCTCCAGC 520 29 96.6 32 ............................T AGTCCACCATTGCGGCATCCGTGTGCCCTGTC 459 29 100.0 32 ............................. ATCGGCGTTTCCCATAGCACTATCCATCGACA 398 29 96.6 32 ............................T AACCGCAGCTCAAACCAGCTAACGGGGGTGAT 337 29 100.0 32 ............................. ATAGACATTGTGATCCCTTTCGGTAGTAGTGG 276 29 96.6 32 ............................C ACCCATGGGCGACCGTGCGGTACACGGTAACC 215 29 100.0 32 ............................. TTTTTATTTGTGAAGGAGTTCACACATGCATG 154 29 93.1 0 ...........................GA | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.7 32 GTTTTCCCCGCTCACGCGGGGATGTTCCG # Left flank : GTTCCGCTACCAGGTAGACCGTGATTTATTCTTCGAA # Right flank : AAGGTTATTCAGGGGTTTCTGTAGAAGAATAGCTTGGTAAGGGTTTGTATTGTGCGCTTCGTGGTGGCTATGGGTAATCGGCAGTCGGTGTGAAGTATTCGCCAGTTTTTGATGTGGGCGATTGCT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 165-6695 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOHM01000047.1 Corynebacterium canis strain CCUG 58627 Scaffold47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================= ================== 165 29 96.6 32 ............................T TTGCCGTTTATTGAGGGTAGTGATGAGTTGAT 226 29 96.6 32 ............................C CGGGCAGGCAAAGAACTCGCCGCCCGCCTCAA 287 29 96.6 32 ............................T GGGAAGACTCATGTGGCGAAGGTCATACTTAA 348 29 96.6 32 ............................A TGATCTGTCAAACCTCACCACCGAGGAATTTA 409 29 96.6 32 ............................T GCGATGATGCTCAAGCACGCGATCATTACGAT 470 29 96.6 32 ............................A CGGGCATGGATAGCCCAAAACATAGAATCTCA 531 29 100.0 32 ............................. ACCGGTGTCCGGCCACATTCTCCAGGAATACG 592 29 96.6 32 ............................C TGCTCGATGGGATGCCTCCAACCGAGGACTTA 653 29 96.6 32 ............................C CGATAAACTAAAAACCCCACCGCGACTTTTGA 714 29 100.0 32 ............................. CTCCTGCGGAACCACAGCACAACCGCAGAATG 775 29 100.0 32 ............................. TTTGCCCCGCATTCTCTCTGACCATCCAACCC 836 29 100.0 32 ............................. GCGTGCGCTATCAACGCAAGTTCATCCCCGCG 897 29 100.0 32 ............................. TATGGCAATCCTGGCTGGAGGAGTTGAGTACA 958 29 100.0 32 ............................. CATTACGAGCGGCGCGGCAGTCGTTTGTTCGA 1019 29 100.0 32 ............................. CGCCTGTGTGCAGGTGCGGAGGCTGTGGTGCA 1080 29 100.0 32 ............................. GGTTGAGTATTTATTGCCCTACCTGGTTCTAG 1141 29 96.6 32 ............................A CAGATTCTTGACAGCGAAAGTGCTTTAGGCTA 1202 29 96.6 32 ............................A CTGATTGATGTGGTTGGGGAAATGCGGAAACG 1263 29 96.6 32 ............................T GGCAATGTGTCGGAATGCCCACATTCACACAA 1324 29 96.6 32 ............................T CTTCGCAGACGAAATCCACCGCGCCAAAAACT 1385 29 96.6 32 ............................T AGTGCGTTGATGCACCCACGGGAGACCGTACC 1446 29 100.0 32 ............................. CTCCATGCTGGGGAGATCGTCGTGCACGTCGT 1507 29 96.6 32 ............................A TCGCAGGCAGTACAGACTGGACCGCCATTATG 1568 29 100.0 32 ............................. TTGAGGCGGCGGAACTGAAAGCCCGCACCTTG 1629 29 100.0 32 ............................. TGCCGGAGCGCGGCGAGAAAGGCGAGAGGGGC 1690 29 96.6 32 ............................T TCTCAAGCAGCACGCCGCGGCGGAAGGCATTG 1751 29 96.6 32 ............................T TGTTTGCCGAAAACAGTGTGGTGGTGACAGTG 1812 29 100.0 32 ............................. AATTCAGGAGCCCTCGTTTTTGGGAAGCCGAA 1873 29 100.0 32 ............................. CGCGCTGAGGCAGCTGCCCTGCTGGCGGAGCA 1934 29 100.0 32 ............................. CAAATTTGTAGCGCACCCCATGGGGGGATACG 1995 29 96.6 32 ............................C AATGAGTGTGCGCATGAACACCTCCAAAGTAG 2056 29 100.0 32 ............................. CGCAGCGAGATTCACCTCACCCTCTCCATCAG 2117 29 100.0 32 ............................. AAATTCGAATCGGTCATTGTTCGAGAAACCGT 2178 29 96.6 32 ............................C GAATGGTCTACGCGATGCACCGGATGCCCGTT 2239 29 100.0 32 ............................. GCGATATTGTTCACAGGTTCTCCTTTTCTTTT 2300 29 96.6 32 ............................T CTCCTCGCCTCAGAGCTCGCTGGACGGACGCC 2361 29 100.0 32 ............................. TCATCGTCGGCGAAGCGTTGGTGGGGGACGCG 2422 29 96.6 32 ............................T GCTCGGAAAGACGCAATCAACCCAGGGCAAGC 2483 29 96.6 32 ............................T CTCAATGGATGAGTGTGCCACGCGCTCATCGA 2544 29 96.6 32 ............................C ATCCAACGCGCCGTACGACCAGAAAGACCCTG 2605 29 100.0 32 ............................. AGCGTGCCACAGCTCAATCGCTGTAGACGTGC 2666 29 96.6 32 ............................C CGTGTAGCACACCGTCTACCACCCGGAAGCGT 2727 29 100.0 32 ............................. CGCCCTGCCGGAATACGTGGTCCAGCCCTTGC 2788 29 96.6 32 ............................T TGCTTTACATTTCGTTCCCCTGTCTCGCTGCT 2849 29 100.0 32 ............................. CATTTTTTTCCTTTCTGTCTGCGAGCCTGTCC 2910 29 96.6 32 ............................C CTCGACGATATCGACAGCGGTGACGACGACAT 2971 29 96.6 32 ............................C GTAGCAGTGGTGGAGGAGGTGGTCACGGGTTT 3032 29 96.6 32 ............................T GGCGCTAGGCAAAAATCGATGAGCTCCGTGTT 3093 29 96.6 32 ............................T ATCTTTCGCCTCGCCGGAGGCCGTGGCCTCGC 3154 29 96.6 32 ............................C TGCTGCTGATGAAGTCCTGGCTGCTCGTGGAA 3215 29 96.6 32 ............................T AACTTCAAATAGGCAGGCTCCATGTCCTTTGT 3276 29 100.0 32 ............................. GGTTTGCAGAGGCTGAAAAAGCTACCGAACAA 3337 29 96.6 32 ............................C GCACTACCCAGTAGGATTGGAGAGTTTTGTAC 3398 29 100.0 32 ............................. ACAAACCGGAACTGATTCTCACGTACTTTTTT 3459 29 96.6 32 ............................C AACTCAAAAGCATGGATAACAAACCACTCCTG 3520 29 100.0 32 ............................. GCTGCGATTATTACTCAGTCGGTGGGTGGTCC 3581 29 96.6 32 ............................T AACCGTGAACACGAATCAAACAATCCCCAGGA 3642 29 100.0 32 ............................. AATATTGTTTTGATGGTGGCGCGGCAGAATGG 3703 29 96.6 32 ............................T GGGTTGGTGACGGAGCGGGTGATTGAGGCGGT 3764 29 96.6 32 ............................T GGTGTTTAATTCGTTTCATTTGAAGGCGACGG 3825 29 100.0 32 ............................. AATATTGTTTTGATGGTGGCGCGGCAGAATGG 3886 29 96.6 32 ............................C GGAACCACCGCCTTCCACACACCAGGCGAACC 3947 29 100.0 32 ............................. CGCGGCAGCCGTCAACACCGGCTGATCACGAT 4008 29 96.6 32 ............................T TTGGGAGCCTCCGCGGGTTTCTGGTTTCTCGC 4069 29 96.6 32 ............................T ACCCTGTCGACCTTTAGTCGCGAATCACCTAT 4130 29 96.6 32 ............................C GGAACCACCGCCTTCCACACACCAGGCGAACC 4191 29 100.0 32 ............................. CGCGGCAGCCGTCAACACCGGCTGATCACGAT 4252 29 96.6 32 ............................T TTGGGAGCCTCCGCGGGTTTCTGGTTTCTCGC 4313 29 96.6 32 ............................T ACCCTGTCGACCTTTAGTCGCGAATCACCTAT 4374 29 96.6 32 ............................C AGACCCCTACACCATCGACAGCGGCGACCGCG 4435 29 96.6 32 ............................T GACCAGCGCCCCCTCACCGTGTGTGACTTCAC 4496 29 100.0 32 ............................. ATTACGACCCGGAGACGTTCGCAGACGAGGTC 4557 29 96.6 32 ............................C TCCATGACTCGGCAGCGCGGTCTTCACCTCCG 4618 29 96.6 32 ............................C TCCATGACTCGGCAGCGCGGTCTTCACCTCCG 4679 29 96.6 32 ............................T ACAGTGGCGTGCACGAAATCCGCATCATGGCA 4740 29 100.0 32 ............................. CCAAACACGACGCGGACGCGGATGGGGATGAG 4801 29 100.0 32 ............................. CGCCACTTTGGCCCACCTGGATTATCCGTGGC 4862 29 100.0 32 ............................. CCCTTCATCAGCGCCCGCCCTGACTCAAACAG 4923 29 96.6 32 ............................T TATCGCTGGCTATTCGCAAATCGATGGGGTAG 4984 29 96.6 32 ............................T CACCTCAACCTCCTGACTGAACTTCCGATTCC 5045 29 96.6 32 ............................T CCTGAAAGCGACGCTCGACGCTGAGTGGGCCG 5106 29 100.0 32 ............................. TACCCCAGTTGCAGAATGGCCGGAACACTGGC 5167 29 100.0 32 ............................. CTGACGATCAGCCTTCATACGCTTCGCATCCT 5228 29 96.6 32 ............................T TGTGAGATTCTTCACACCACCCACAGACGGGG 5289 29 96.6 32 ............................T TTCCACCGGCCGACCAGTCGAAGTGTCATTAA 5350 29 96.6 32 ............................T TTAAGGAGGCTTCGGATCCTGCGAAGCGCCCT 5411 29 96.6 32 ............................A GTCTCGAAGACACAAGCAACGTTGCAGCCGAC 5472 29 96.6 32 ............................A ACCGCCGCCTCCGAGGCGGTGGCCGAGCAGGC 5533 29 100.0 32 ............................. CCGACTGACGTTGCAAATCAGCATCCGCCAAA 5594 29 100.0 32 ............................. TCATCCCACGATCCCTCGAACTCCTTGGCACG 5655 29 96.6 32 ............................T TCGCTTGCATTATCCACGGCCAAAACCACAGC 5716 29 96.6 32 ............................C GGCCATCGAGGGTGGTGGGCTCCAGGCGCTCG 5777 29 96.6 32 ............................A TCGTGCGCTGCACCCCATTTTGGGAGGTTGCC 5838 29 100.0 32 ............................. ATCTTTGAAAAATTCCACAGTGAACAGCGCCG 5899 29 96.6 32 ............................C CCCGCAGACGGGCTGGTGGAACTCGGGTTCCT 5960 29 100.0 32 ............................. ATCATTTCGTCGGGCTCCTGGAGCAGCTGGGC 6021 29 96.6 32 ............................A TCGTGCGCTGCACCCCATTTTGGGAGGTTGCC 6082 29 100.0 32 ............................. GCTCGAGAAATCGGCGCTGTCATGGCAGATGT 6143 29 96.6 32 ............................C GCGGGACATGGGGAGCGCACCAGGTCCAGAGA 6204 29 96.6 32 ............................T CCGCTGGTCAAACCACATTTTTTGGGGTGGTA 6265 29 96.6 32 ............................C GTCCGAGGCCTTCGAACGTCCAGGAGTCGAGC 6326 29 100.0 32 ............................. CGGTCGCGCCGCTCATCGCGCAGGTGGCCGGG 6387 29 96.6 32 ............................T TTTCAGCGGGGTTTTTTCCTGTCTCCAGCCAG GCG [6402] 6451 29 100.0 32 ............................. ATCACGAGGGCTATGTAGATGAGAGGTTCGGG 6512 29 96.6 32 ............................T GGGTAGCTACGCACGGGCGAGGGAATTCTCGA 6573 29 100.0 65 ............................. TAGCCCCGCTGGTTCTGGAAGCAACAACCATCCAGAACCAGGGGGCTACCCCTCCACAATAACCA 6667 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================= ================== 107 29 98.0 32 GTTTTCCCCGCTCACGCGGGGATGTTCCG # Left flank : TACAAGGCATTTGTGTTTTGTTTTGTCATAGATTCATTATGCGGAACCTTGTATCGCCTTTGCTATGTTCGGGGGTATTGAGGTCGGAAAGTCCACCCGGCAAAACCCCAGCGGTTGAATAACCCTCTTCCTCGTGCGCGTGGTGATAAGGCCCCACCGTTGGGG # Right flank : GATCCGCCTGCACTGCAAACGAAACTATTTACCCGGAAGATAGAAATATCATGCAATTCACAAAACCCAATATGAACATCTTGAAGGTTATTCAGGTGTTTCTGTAGAAGAATAGTTTGGTGAGGGTTAGTATTGTGCGCTTCGTGGTGGCTATGGGTAATCGGCAGTCGGTGTGAAGTATTCTCCAGTTTTTGATGTGGGCGATTGCTTGTTCGTGTGACCCAGCGGATGGATGCAAGGGCATTGTTGCAGCGCTGCTGCCAGGGCTCAAGAACTTTTTGCCCGTGTTTGCGTTTTTGGGGGATGTCAAAACCGGTACCTTCGTATCCAAGGTCGGCGGTGACAGAGTCGCCTGGCAGCACGGTGGTGATGCGCAGTTTGTCTGCAATGCGCTGATCGTGGGAGCTCCTAGGCATTGGCGGGCTGATGTACGTAGGTGTTGCCGCTCTGATCGGTTAAGACCGCGAGGTTGTGGCCGGTGGCTTTGCGTTTGCCGCTGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 10226-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOHM01000009.1 Corynebacterium canis strain CCUG 58627 Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 10225 29 96.6 32 ............................C TCACAGCCCCGCCCCCCACATGGATACAAAGC 10164 29 100.0 32 ............................. CTGGTCGACCGAGACCAATACAGCGACGTACA 10103 29 100.0 32 ............................. CCCACGGATTTTTTCATCTCCGCGGACTTTCA 10042 29 100.0 32 ............................. ACAGGTTGGCTGGCCTATTGTGGTCAATCCGA 9981 29 100.0 32 ............................. ACCAATCTCTGTACGGTCGCCTTCGCGGGTGA 9920 29 100.0 32 ............................. TGGTGAACGCATATGTCGCGCACCAGCCATGG 9859 29 100.0 32 ............................. ATTTTACGGACCTGTGCATGCGTCTCAAATGG 9798 29 96.6 32 ............................T CCACCGCCCGCCCTGCCAAAATCCACGCACAC 9737 29 96.6 32 ............................T GCCATCTGACCACGGCGTTACCCCCGCTACTA 9676 29 96.6 32 ............................C ATCCTCGCCGACGATTCACGAAGGCGTGGATC 9615 29 96.6 32 ............................T GCGGACATCTGGCATGACGCTATGTGTGATTG 9554 29 100.0 32 ............................. CGGATGGGGCGATGAACGCCCGCTGATCGACG 9493 29 100.0 32 ............................. TCAACGCAGCCAGCTCGAGGGACGTATCTTCG 9432 29 100.0 32 ............................. CCGCCGCAGCTTATATGGGTGGCTTCAGCCTG 9371 29 100.0 32 ............................. GCGGCTTTGAGTTCTTCCCACGCGGTGCCTAG 9310 29 100.0 32 ............................. GAAGCGAGCGACCCGGCGAAGGTGCCGACGAA 9249 29 100.0 32 ............................. TTGCATGAATTCGGGCGTGGAAAGTTGGACAA 9188 29 100.0 32 ............................. AAGTGTTCTCGATCAGGGGATCGTGATCCCAG 9127 29 100.0 32 ............................. AGCTCCGCATCGTCACGGATCCGCGAATGCGG 9066 29 96.6 32 ............................C TCCTGTGTAGCGCGCTTAAGCTGCGTCAAACG 9005 29 96.6 32 ............................T TCGAGATGAACTATTCGCGGCGGAGCAACATC 8944 29 100.0 32 ............................. TTCAAGGCGAAGTCCTGGGCGCGATCGGGTCG 8883 29 96.6 32 ............................T GGTCGCCGCACGAAACGCCTCCGCTTGCACGA 8822 29 100.0 32 ............................. CCCAAGAACGCATGACCGAGGTCAGGTTCCTG 8761 29 96.6 32 ............................T TCCCATCTCGCATTCAGTCCGTGTTCGCAAAC 8700 29 96.6 32 ............................A CCTTGTGACGCTAAACCGCATTACGGGCGTGA 8639 29 96.6 32 ............................C TCGGCCAGGCGGTCGGCGAGGGACTCCCAGGT 8578 29 96.6 32 ............................C CGGGGGCGGCCTGCTCTGCGACCGCCTCGGAG 8517 29 96.6 32 ............................T TAACGCTGTATGGCGGTGATAATCAGCGCATT 8456 29 96.6 32 ............................T AGATGCATTCCAGCAGCTCATCGATGCCGTCT 8395 29 96.6 32 ............................T TTTTCTTCAGCGGCGGCAATTTGTACCGCACT 8334 29 100.0 32 ............................. CGCAAGCGACAAAAAATTTAAAAACGGCGGAA 8273 29 100.0 32 ............................. GTGAATGTGACAGGCGTGCCGCTTTGACCGCG 8212 29 96.6 32 ............................C GTTCGAGTAATTTGCGTTATCCAACAAACCGA 8151 29 96.6 32 ............................T ATGACGCGCGTGGCGGTACCGGTTCACCGCAC 8090 29 96.6 32 ............................T TCGCAAATTCACGCCACAGGTGGACGGACTAT 8029 29 100.0 32 ............................. CGCACCGACAAGTGCAGATATGACAGTAATCA 7968 29 100.0 32 ............................. TGAATGTGACAGGCGTGCCGCTTTGACCGCGA 7907 29 100.0 32 ............................. CCACTGCCAGCCCGCTTGTAGGCTACTCACAA 7846 29 96.6 32 ............................T TTGCCGCTTCGGCCAGCCAAAATGCACCACCG 7785 29 96.6 32 ............................A CCGCCGCCTCGGAGGCGGTCGCCGAGCAGGCG 7724 29 100.0 32 ............................. TCGCAGCGCAGATGCGTTTTTTAGGGCCTGCT 7663 29 96.6 32 ............................A TGGTCAGATTATGTGGGGTGGCCAGGCGGTGG 7602 29 96.6 32 ............................T TTGCCGCTTCGGCCAGCCAAAATGCACCACCG 7541 29 100.0 32 ............................. CTCGATGATTTGCGGCAACAGCGGCAGGATCG 7480 29 100.0 32 ............................. ACTCCGGCAGCGGGCGACCATGCAACAGCCGC 7419 29 100.0 32 ............................. CTGTAAAACTGCTGGAAATCCGGCACCAGAGC 7358 29 100.0 32 ............................. GGTCTTCGAGTGCATCGTTGACGTGGAAGAAT 7297 29 100.0 32 ............................. ATCGGCGTTTCCCACAGCACTATCCACCGGCA 7236 29 100.0 32 ............................. GAGATTCTGGCGGCGCGCAGCGCGAAGATTCG 7175 29 96.6 32 ............................T CAGGCCCAGGGCGGGGCCGAGGGCGGCTCCGA 7114 29 96.6 32 ............................T GCATCTATTATGACGGGCCAGATCGGCTCGAG 7053 29 100.0 32 ............................. GCCTCGGACGATGGCTCATCAAGTGGGAGAAA 6992 29 100.0 32 ............................. TCCGGGTGATTGATGCGGAAGAAGCTCACTGT 6931 29 100.0 32 ............................. GTTCGCCATCGCGAGAATGGATGCGATGGTGC 6870 29 96.6 32 ............................C TCCCGAACACCAATACATGGGAGCGCTGGGAA 6809 29 96.6 32 ............................C AGCCGCCACCCATCTGCATGCACCACAGCCTC 6748 29 100.0 32 ............................. CGCAAAGGCGATAGTAGCGGGGGTAACGCCGT 6687 29 100.0 32 ............................. TCGGACCCGTACAATACTCGCCCGATACTCGA 6626 29 96.6 32 ............................T TGGTCGCGCTCAAGGACTTCATTGTCACCCAA 6565 29 100.0 32 ............................. GATGGTGGCCCACTTCACACGGGCCTCGAACT 6504 29 100.0 32 ............................. CTTGGTATGTTTCGCCGCCGAACATACCTGAA 6443 29 96.6 32 ............................T CCGTCAAAGCGGTGAAGATCACACTGTGGCAA 6382 29 96.6 32 ............................T CGTCATGGCCGAGCCTCCAAGGTATATCGGTC 6321 29 96.6 32 ............................C GTAGCGTTGGTCATGGTAGCGGACCCCATCAG 6260 29 100.0 32 ............................. GCGGCGGCGCCGCCCTTCGCGGCAACTGTGGC 6199 29 96.6 32 ............................T GCGCCAAGCACCGCCGTGCCCTTGGGCACGGC 6138 29 100.0 32 ............................. GCCCGCCTACCGATTGGGTAATGATTGCCGCT 6077 29 96.6 32 ............................T TTGTTTGTGCTCAAATTCGGGCACGCCGAATT 6016 29 96.6 32 ............................T TATGGACCCGCGATATGAATATGTTGTGACAT 5955 29 100.0 32 ............................. CCAAACTCGCCGCTGACGCGGTAGCGAAAATT 5894 29 100.0 32 ............................. GAAACGTATTTTCCGACCGCGGTGCGCGTCGA 5833 29 96.6 32 ............................T TGCAGGTGCAGACTCTCGCGCTTCCGGACGGC 5772 29 96.6 32 ............................T TGGATTATCAATTCGCTTGCCTATGTGTGGAA 5711 29 100.0 32 ............................. CAACACAATGCGCATAGCCTTGTCGCCGTCCA 5650 29 96.6 32 ............................T TACCAACCATGGTGACTTTCCGCTGTGGCCCA 5589 29 100.0 32 ............................. GACGGCAATGGCCAGTACTACGCGGGCGGCCC 5528 29 96.6 32 ............................T TAATCGCCCCTACGCTGACACAATGGTTGGAT 5467 29 100.0 32 ............................. AACTCAAAGCCGCCTTTACCGGCGGTGACCAG 5406 29 100.0 32 ............................. GGCAAGGAATATGCAGCTTGGTTGTCCGCACT 5345 29 96.6 32 ............................T CTCACCATCGAGGTCGAAGACGCCAAGCGCAT 5284 29 96.6 32 ............................T TCGTTCCACCGCCCACCGATATCCGGGGCGTG 5223 29 100.0 32 ............................. GTGTTCTTTGATGCTGCCGTGTTCCTTGATTT 5162 29 96.6 32 ............................T TGACGATCGCAACGAAGTAGGCAGGCAACCCG 5101 29 100.0 32 ............................. CGTGGCATCGATCATCGAGGCTGGAATCGAGC 5040 29 100.0 32 ............................. AGGGGAGCAAATTCATTTCGCGCAGCAGGTCC 4979 29 96.6 32 ............................T CTGACAGATCGCAGGGCCGAACGTCGGGTTAT 4918 29 100.0 32 ............................. CTGGTGTTCGTGTAATCGGGTGTTACTCCTAC 4857 29 100.0 32 ............................. GAGGTGCGGCCGATTTTGTTGAAGGGCAGTAC 4796 29 100.0 32 ............................. GCGCTCCGCTGCCTCTGCGGCGGTGCGTGCGC 4735 29 96.6 33 ............................A GGCGTGGTGAAGATGGGCAGCTATGCACGAGCG 4673 29 96.6 32 ............................T GAGGCCATTTGACTCCAGATCCTGGTATGATG 4612 29 100.0 32 ............................. TTGCAGACCACGAGGGGGTGCTGGTCGTTTTC 4551 29 100.0 32 ............................. ACACCGTTTTCACCGTCGGTGAGTTCTTGGAC 4490 29 100.0 32 ............................. CCATGGCGGTTGAAGCGTACGAGCAACAGTTG 4429 29 96.6 32 ............................T TTTTGTCTGCCCAGGCCTGGGCTTGAGCTTTC 4368 29 100.0 32 ............................. CCGTCGCCCCACTGATCGCGCAGGTCGCCGGG 4307 29 96.6 32 ............................T TGATGCCATGTGGTTTAGCTCGATTCGATTGG 4246 29 100.0 32 ............................. CACGTGTTCCTTTCGGTTGAGCAGCTTGGGCG 4185 29 100.0 32 ............................. ACGCATGAACGCAGGATTGTTGCGGTGCCCCA 4124 29 96.6 32 ............................T CCTGGGTTTCCGCCCTGGCGGTGGAGCGCTCT 4063 29 96.6 32 ............................T CAATCAGTAGCCGTAGTCCACGCGATGCACGG 4002 29 96.6 33 ............................C GCATACCATTTTGATGTGCTTGCGGCGTACCAC 3940 29 96.6 32 ............................C ACCCCGGAGAGAGAGGCCCCTGACCCCCACGC 3879 29 96.6 32 ............................T TCACAAGCCACTGCCAACCGGTTTTCAACCCC 3818 29 96.6 40 ............................T CCGCATCGCCTTATCGCCGTCCACAACATCAATCGAAATC 3749 29 100.0 32 ............................. AGTTTGTGGCTACGTTGCGTATGATGCCTGCG 3688 29 96.6 32 ............................T CAACCAGGTTTTTGTTACCCGAAGCGGTGGTG 3627 29 100.0 32 ............................. CGGCTCACTTCGAAAGGCGTCGTGAAGATGGG 3566 29 100.0 32 ............................. TGCTTTAGGCTACCCCACGGGGGCTACCCCCG 3505 29 96.6 32 ............................T GAATTTGATAAGCCGGATTCTGTATTCACACC 3444 29 96.6 32 ............................T GCTGATACATCACTACCACGGCAGGCGGGGGC 3383 29 100.0 32 ............................. CATCTTCATTTCCAAGCACCTCGACCCCGTCA 3322 29 100.0 32 ............................. TGGCTATGGTTAGCTCGATGAGCTCCACCTGA 3261 29 96.6 32 ............................T CGGCAGATCCTGGAGGAGTTGTTGCGTCGAAG 3200 29 100.0 32 ............................. ACACGCTCGGCGAGATGCAGGACAGCATCAGC 3139 29 100.0 32 ............................. CGGCACACGGTGAGGGGGTGCTGGTCGTTTTC 3078 29 100.0 32 ............................. AAAATAATCACAAAACCCTTTAGGAACAATTG 3017 29 100.0 32 ............................. CTACCTGTTCAACATTTCCCACGCGATCAGCT 2956 29 96.6 32 ............................A CTGATTGATGTGGTTGGGGAAATGCGGAAACG 2895 29 96.6 32 ............................C ACGGGACCACCCAATGATTCTAGGTGTGGCTA 2834 29 100.0 32 ............................. ACAAAAAGGTCCTACAGGGTTTTGCGAAAGAT 2773 29 96.6 32 ............................T CGTCATAGTTGACAACCCCAAACAATCCAACT 2712 29 100.0 32 ............................. ACAACGCCCCAGGGCGGGACAAAGCACACACG 2651 29 96.6 32 ............................T ATCACAGTCACTGGGGTTTTGACTGAGGATGA 2590 29 100.0 32 ............................. CTATCGGGTCGGCGACCCCCGCCGCCTGATCG 2529 29 96.6 32 ............................T GAGCACGCCTTGACGGGCACTTCTTTGATGAG 2468 29 100.0 32 ............................. AACCTGCCACAGCTCGGCTACTGTAGACGTTC 2407 29 100.0 32 ............................. TATCACTAAAGCTATCACCCCGCTTCTAGCGG 2346 29 96.6 32 ............................T TGAGGAATTCGGTAAGCAGTGGGAGAAGTTGC 2285 29 100.0 32 ............................. TTTCACACCCATAGGTGTGACCAACTTCACGG 2224 29 100.0 32 ............................. CGGCGTCAACAATCCACCCAAAGGCGTCCCGA 2163 29 100.0 32 ............................. AAGTGGTGTGAGCGGAATAGTGTTTCGCATGT 2102 29 96.6 32 ............................T AAACGAATCCTCTTCAATACCCAAAAGTTCGG 2041 29 100.0 32 ............................. TTGGCGGGTATGAATGGTGCGATGGATCGCTT 1980 29 96.6 32 ............................T GATATCGTGTCTGCGTTGAAAGCCGGCTGGCA 1919 29 96.6 32 ............................C TTATCCCAATCAACTTTTCGCGTGGTACGAGG 1858 29 100.0 32 ............................. CGAGCATCGCGTCAGTGGCGCTCGCCGCCGAC 1797 29 96.6 32 ............................T TCGACGAGGTGCCATGGGACGATTCCGTGTAT 1736 29 100.0 32 ............................. TTTCGGGGGAATACTCGTGTGATAGGTGGGGT 1675 29 96.6 32 ............................A GTGGGGGGCTGGAAGCGCTAGAATGCGCTTTG 1614 29 96.6 32 ............................T TCGCACCAGTAGCACCAGTGGCATCCCACGAA 1553 29 100.0 32 ............................. CATTTCTTTCGACCGTTGCTTTTCAGCCCCAT 1492 29 100.0 32 ............................. GCGAGGAGCCAAAAATGTTGTTCACCGACAAG 1431 29 100.0 32 ............................. CGGCAAATCCGTGCACAGCCGTGGATTTCCCG 1370 29 96.6 32 ............................T CATGCCGGACACAATTCCGGCGATATAGACGA 1309 29 96.6 32 ............................T GGAAAAGGAATACAAATGGCAAATCAATTCCA 1248 29 100.0 32 ............................. TCAAGTGAAGCTCTTGGCGGGGCACAGCCCCG 1187 29 100.0 32 ............................. CGGCAAATCCGTGCACAGCCGTGGATTTCCCG 1126 29 96.6 32 ............................T CATTACGCACCAGCCCCCGCAATAGTTACCTT 1065 29 96.6 32 ............................T GAGAGCTCCCCGGTCGGTGACCAGCGCGAGAG 1004 29 100.0 32 ............................. AATTCGATATCGACCAAATCGCAGATCGGTGC 943 29 96.6 32 ............................T GGTGTTATCAGCAAAAAGCTGAACCACCACCA 882 29 96.6 32 ............................T CACTGAAATTGTTTCCGAGTTAATCAAAAGCC 821 29 100.0 32 ............................. AAGCGAAAGGCGACCAACATGTAAGGGCGAGA 760 29 100.0 32 ............................. CCGCCGCCGACACAAACGCCTCATCCGACATC 699 29 96.6 32 ............................T GGTCCACGCGATGCACGGGCTGGTCATTGACC 638 29 100.0 32 ............................. TAAATGTTCTACCACGAAAACGCGCTCTGCCC 577 29 100.0 32 ............................. CTACCAGGTAGACCGTGATTTATTCTTCGAAA 516 29 100.0 32 ............................. CGCCGTCCTGACCAGCCGCCCGGAAAGCGCCG 455 29 100.0 32 ............................. ACAAAGCATCAAACTTCAACGACACGAACTTT 394 29 100.0 32 ............................. CGTCGCGGCAGACGGAGCAGCATATTTCAGCG 333 29 100.0 32 ............................. ACTCACTCTACGTGACGGGCTGGCCGGGTGTC 272 29 96.6 32 ............................T GGTCCACGCGATGCACGGGCTGGTCATTGACC 211 29 100.0 32 ............................. TAAATGTTCTACCACGAAAACGCGCTCTGCCC 150 29 100.0 32 ............................. CTACCAGGTAGACCGTGATTTATTCTTCGAAA 89 29 100.0 32 ............................. CGCCGTCCTGACCAGCCGCCCGGAAAGCGCCG 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ======================================== ================== 168 29 98.5 32 GTTTTCCCCGCTCACGCGGGGATGTTCCG # Left flank : CGAAATCGTCGAACTATGGGACAACCGAAGAGCCAACGTAGCTGGTGGAAGAAACTACGCTAATGAGTAAGCCGTGATCACAGTAATACTAACGTCGTGTCCCGAAAGTCTTCGCGGACACCTAACTCGATGGTTAGCCGAGATCAGCGCCGGAGTGTTCGTCGGCAAGGTCAACCCACGCATACGCGAAAAACTATGGGACTTAGTGAAAACGGAGGTGAAAACCGGAAGAGCTCTCATGACCTACAGCACTAGGGAGACCGAACAAGGCTATGCGTACAAAGTACACCGCCACGATTGGATTCCCGAAGACCATGACGGACTACTACTCATACGAAGGCCAACCAAACAGGTGCAGAAAACAAACCTTAAGCCTGGTTGGTCAAATGCTGCGAGACGCCGCAGGTTCGGCTGACACTTCACATCAGCCCCATATTTACATTTAGGCTAAATTAAATGTAGAATTCGGAGTGCGGAACCAAACTCGCTGCTGAACAAGT # Right flank : C # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //