Array 1 66294-67517 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVN010000016.1 Listeria seeligeri strain FSL L7-0940 NODE_16_length_72812_cov_152.645081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 66294 36 100.0 30 .................................... TATGGAACCAACTATCGCCTATCGTTTCTA 66360 36 100.0 30 .................................... TAAGAAGGGGATTAGGTAAATACATATATT 66426 36 100.0 30 .................................... AGAAGATTACTTACAAAAAAGCATTCTTCC 66492 36 100.0 30 .................................... ACGGACGGTGTAGGTTTTGTCAGTGATACC 66558 36 100.0 30 .................................... TGTCCTTGTTTAATCCCGGTTCTAACATGA 66624 36 100.0 30 .................................... TTTTGATATCCCGGAGACTATCGACAAAGA 66690 36 100.0 30 .................................... TACCCGGAATTGGAGAATTTGGGTCATCAT 66756 36 100.0 30 .................................... TATCTCCCAAATATAGAGGTCTTATCGAAC 66822 36 100.0 30 .................................... CATGCTGATGTTTGGACTGATACGGAAGTA 66888 36 100.0 30 .................................... TTCGTATAGATTAATTGCATCGGAGTCCAA 66954 36 100.0 30 .................................... TATGGAAGAGGAATTTATTCATGAGGAAAG 67020 36 100.0 30 .................................... CGTCGAATTTGTCATTATTCGGTCGTCGAA 67086 36 100.0 30 .................................... CACAAAATGCTATCAACTAGAAGGTTATGT 67152 36 100.0 30 .................................... CTCTTCTTTCACTTTCTTCACTTGTCTGCA 67218 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 67284 36 100.0 30 .................................... TCTAAGAAAAACAGAAAATAATCTTTTAAA 67350 36 100.0 30 .................................... GTTCCCCTATCTGTTTTAGTGCCTTCTCTG 67416 36 100.0 30 .................................... TACAATGAATAATCATATTACCGACTTAAC 67482 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAACTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGACTCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAAATATCCTTTACATCTATTTTTTTCTATATCTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTTGCTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAATGCCAAAAGCGCAGTAATGGCAAAACATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTCTGATCCATCTCCGCCTGAGAAACTTTCACTGAAAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 62688-61419 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVN010000001.1 Listeria seeligeri strain FSL L7-0940 NODE_1_length_275010_cov_131.940098, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 62687 29 100.0 35 ............................. TTTGTTTGAAAGTATACTGTACCAACGTTACCACC 62623 29 100.0 37 ............................. TATTTAGCGATGGGATTAATTTACTGCTGGGTTTCTT 62557 29 100.0 36 ............................. AAAATAAAAGTCAAAGAAGCGACTAAAAAAGGCTTT 62492 29 100.0 37 ............................. ACAAAAGGCTACGCAGATTGGGACCGCCCTATTTGGT 62426 29 100.0 37 ............................. ATCTTTCGAGGTAATGAATTGTTAGCACGTGGCGTGC 62360 29 100.0 36 ............................. ACAATAACAATTTGATTTTCATAATCATGTTTTTCG 62295 29 100.0 37 ............................. CTATTTGCCCTTTATAGTTCAAGTATCAAAGATAAGT 62229 29 100.0 34 ............................. AGAAAGTTGTCGGCTGCGTTCATAACCTCACGAT 62166 29 100.0 37 ............................. ATGTTTTCTAGGAATCACCTTTGTATTATGAGATTTT 62100 29 100.0 37 ............................. AAATGTTCAGCTAATTCGTTGTTTGTTGCCGTAGGAT 62034 29 100.0 36 ............................. TATTCAACTGAATCAGGACCTTTTTTTGCTCCATCG 61969 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 61903 29 100.0 35 ............................. ACAGACGGCAATGAATTTCAAGAACGATTTTTAAA 61839 29 100.0 38 ............................. TCGCTTATATGCGAGTTGACAGCCGCGATAATATACTC 61772 29 100.0 35 ............................. ATATAACTAACATTTTCAGCGACGGACGCGTCCAT 61708 29 100.0 37 ............................. CTGGTTGGAAAATGAAAAAAGTGGCTAATGGTTATGT 61642 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 61577 29 93.1 36 .......C....................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 61512 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 61447 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 97.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 72553-71292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVN010000001.1 Listeria seeligeri strain FSL L7-0940 NODE_1_length_275010_cov_131.940098, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 72552 29 100.0 37 ............................. GAATACGCATTCGTTAAACACTTTTCAAATTCTCTTT 72486 29 100.0 37 ............................. TATGGACTCAGATAGATACTTTGTAAACACGATAGTT 72420 29 100.0 35 ............................. AAATATCCACAAAACGAATGTAGTTATGAATAATC 72356 29 100.0 36 ............................. TTAGAAAATTATCGAGCAAATGTTTCTGATGACAGT 72291 29 100.0 38 ............................. CCAGCAAGGCCATATTAATGGAAATTCAAACAATTGCA 72224 29 100.0 35 ............................. TCGTTATTGATTAGAACATAAAACTGTTCTCCAGC 72160 29 100.0 34 ............................. CCTTCTAATTGGAATTTGAACATACCATCGTTAG 72097 29 96.6 36 ......................A...... TCATAAATTTGGGGGCGGTTACGACAACTGTCGGAG 72032 29 100.0 38 ............................. CTTACTACAGCAGGCGAATACGACGAGGATAATTTAAA 71965 29 100.0 34 ............................. GAAGGTCTTTTTGACTTATTTAGTAATATGTTTC 71902 29 100.0 36 ............................. ATTTAGAAATCAGTGTGCATTTAAACGCAGGCGGGG 71837 29 100.0 36 ............................. ACTTTTAACGACGTTCGAGCAGGTCGAAGCAAAATA 71772 29 100.0 36 ............................. TTTGTATATTGCGTAACGGGGTACATAACTTCTTTG 71707 29 100.0 36 ............................. CGCATTTTTATGTCTAGTGAAAGTTCCTTAATCAAC 71642 29 100.0 35 ............................. TCAATCAAAACAATTGATTCATGGAATGGTTATGT 71578 29 96.6 35 ............C................ GAGGCATCTGCTAGTAAAGTGAAAAAAGAATTTAA 71514 29 96.6 34 ............C................ ACTTGACCGTTATAGCTTGCAAATAGGGCTTTTC 71451 29 96.6 37 .......G..................... TGGCATAATGCCCATTGACCTTGTAAGGTTGGTCAAG 71385 29 100.0 35 ............................. ATGTATTTCGAACAACTTTTATTAGGGTATAAAAC 71321 29 89.7 0 .............C..A...........G | T [71294] ========== ====== ====== ====== ============================= ====================================== ================== 20 29 98.8 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATTAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATTCGTTGGGAGAGAATGAGAGTGGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCAAGTAGCACTATCATAAATTTTTCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATACAGCAAATGTTGAAAAAAACACTAGTATTTTCAGTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTAAGTTTATTCAAGACAGGAATTGAGAAATCTAGTCCAGAAAAATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 79597-78788 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVN010000001.1 Listeria seeligeri strain FSL L7-0940 NODE_1_length_275010_cov_131.940098, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 79596 29 100.0 36 ............................. ACAGGTCAAGAGTATATGATGCCAGAGTTAGGTTTA 79531 29 100.0 35 ............................. TAATACCACTTAGACAAGTTTTCACAAGTAAAGTC 79467 29 100.0 36 ............................. GCATTAATATTTACGTGATTATAGTCAATAGTGAAC 79402 29 100.0 36 ............................. ACTGCTTGCGTTTTTCAACAACTCGACATGGCAAAG 79337 29 100.0 37 ............................. TGACACGTGCAGCAACTGCTTTAAAGTCCGGATTTTC 79271 29 100.0 36 ............................. AACCTATCCGGGGCAGTGGTTAACAATGTGTTTGTC 79206 29 100.0 35 ............................. CTAACTCTTGAATAGCGCTCTGGAACTCTTCGTTG 79142 29 100.0 38 ............................. TGTGTAAACGGAGAAACGTTTGAAGTAGAGTTATTAAA 79075 29 100.0 35 ............................. TTTTCAACAATTTCACGTAAATCTTTTTTATAAAT 79011 29 100.0 35 ............................. GCTTGCTGAACGTTGTAATATAGCGTTCAAGCAAC 78947 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 78882 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 78816 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAATGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //