Array 1 1939488-1938738 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016874.1 Legionella pneumophila subsp. pneumophila strain FFI329 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1939487 28 100.0 32 ............................ AGTACCACGGCACAAACACCGCCTGAAAGTTG 1939427 28 100.0 32 ............................ TACTACGTCCTTAGCTCTTAAGTCTTTTGTGC 1939367 28 100.0 32 ............................ TCTTGCGGCGCGTCTTTGTCTTCCATTAATTC 1939307 28 100.0 33 ............................ CAACAGACACGACAGGGTAGGGTTGCCCACAAA 1939246 28 100.0 32 ............................ GCCATCATGATTACTAAAGTCGATTGTGACCC 1939186 28 100.0 32 ............................ CAAAGTGTACGGAGATAGACCGCAAGACGACA 1939126 28 100.0 32 ............................ AATATAAAGCATCGGGAAAATGTAGACAAAAT 1939066 28 100.0 32 ............................ AAATGCACGGCGCAAAAGTCAGAAAACAGCCT 1939006 28 100.0 32 ............................ AGACAGAAATCCGGCTGGGCTAGAAATGATGA 1938946 28 100.0 32 ............................ TCTTGCCTGCTCTTAACTACAACTCCAGACCA 1938886 28 100.0 32 ............................ AAACAACCACACCTCCCTTTTTAGTTAATCTA 1938826 28 100.0 33 ............................ GATTCGATACATTTTTTAACTCGTCGCCCCAGT 1938765 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCAGCTTAGAAATTACAAAGCCTGCTGTATGCGTCTTTTAATAAGTTCACTGCCGCACAGGCAGCTTAGAAATTGATGTTCGTGCGCCCTATTCGCAGTTATTAGTTCACTGCCGCACAGGCAGCTTAGAAATTCAGAAGATTTGCCTTCATCGAATTCTGGAAGTTGTCAAATTGATGCAAAATGAAGCGGAATTAACAAAACAGCTATACCGTTACGCAGCAAACCGAACTCAGTATGGCAAATTTATTCGTGAGCGAGAAGCTATAGATAAGGCCAATATATTTTTAAATCATGGCAATTACCTTGCCTATGGTTTAGCGGCAACAACGCTGTGGGTTCTTGGGATTCCTCACGGCTTTGCTGTTATGCACGGCAAGACACGTCGCGGTGCATTGGTATTTGATGTAGCGGATTTAATCAAGGACGCCCTTATTCTGCCTTGGGCATTTATCTGCGCCAAGGAAAATAGTAGCGAACAAGAGTTTCGCCAGCTAA # Right flank : TTATTATGTTAAAGGTATTGGCACGCTACGTAGCAAGGTCAGGCCTTGGTACGACCTTGTTTTGATTAGGAAAGTCTAATTATGACTATAATCTCCATTTCTCTTTATGGAGTATAGCAACCGTTAGTCAAATCTATACATAACCTAAACACATAAAAATAAACTCCCTAATTCCATGGAAATGAGTGTAATTGGATCGCAGTCAAAATAAATTGTGAAGTATGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGGATCATGAGAATAGTCTAATGATGTGCGTTAATTATGCATATATGCTAAAAATTACTACCTGATAAGCTAGACAGTGTCGTCAAATTAACTTCCCCATAGTTCAATACACCTGATTTGTACTGCAGCAAGAAAAGAAGAGGTGTTTTTTGCATATCTTGTGGCAATCCCCTCCAACGTTTGAGATGGGGGAAGGCATTCTCCACCAGATGACGAAGTTTATAGATCGCTTTATCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1943064-1939854 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016874.1 Legionella pneumophila subsp. pneumophila strain FFI329 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1943063 28 100.0 32 ............................ TTTTAAAAAACTTTAAGTTCTTTTCTGAAACA 1943003 28 100.0 32 ............................ CGATGAATCAACTATCAATAGATGGCGTTTAC 1942943 28 100.0 32 ............................ AATAAACAAAATTTGGAGTTAAATGTGAATGA 1942883 28 100.0 32 ............................ TTCAGCACATCATATGCGCAGTTAATCAACTT 1942823 28 100.0 32 ............................ ATACCGACACATTTTAATGGGATGGGGTGTCT 1942763 28 100.0 32 ............................ ACTTAATATTACCGAGCTAACATCAGCTAAAA 1942703 28 100.0 32 ............................ TATCGCAAGGCGTGTTCTTTGTATCATCCAGA 1942643 28 100.0 32 ............................ TGAAAAAACATTACACAATGATTCTACTATAC 1942583 28 100.0 32 ............................ ATTACACATATGACACTTAATCATTATCAATC 1942523 28 100.0 32 ............................ ATCCTAAGCACAAGCTCGCGCACTGTAGCCGT 1942463 28 100.0 32 ............................ TGTATCCACTGGAGACTCTCTTCTAATTCTTA 1942403 28 100.0 32 ............................ TGCTGAATCAAATTGACGCCTATAAGTTAAAT 1942343 28 100.0 32 ............................ TCTTTAACTTCTCTAATTATAGTACTGTTATC 1942283 28 100.0 32 ............................ AGCAAAAAAACGAATCGTCGTCAAGCGCAAGT 1942223 28 100.0 32 ............................ ATCTGCTTCATAAATTAAAAATGGAGAACTAG 1942163 28 100.0 33 ............................ CACCATTAACAGTTCCTGCGAGTACCGGCACCA 1942102 28 100.0 32 ............................ ATAACAGCGCAAGAGATTAAGGGATAGATAAA 1942042 28 100.0 32 ............................ TTCTCAACACAGTCTTTTTTGCCATCTCTTCA 1941982 28 100.0 32 ............................ TATACCGACTGCGCTTCCGGTGGTTCTTTGTG 1941922 28 100.0 32 ............................ AAAAGCCAACCGAGACAGCCAAAAAGAGCTTA 1941862 28 100.0 32 ............................ ATTGTGCCCAAGCCAAGGTTGGTTCTTGCGTC 1941802 28 100.0 32 ............................ ATAGTGAAAGTAACATAACCACGAGCAAAAAG 1941742 28 100.0 32 ............................ TGATTGGTTTCTTTTTCTTGACTGTTCTTTGA 1941682 28 100.0 32 ............................ TCTGATAGCGCAACGGCACTGGCCACCCAGCA 1941622 28 100.0 32 ............................ AGACAAGACTGGAACAATATCTCCAGCCTGTA 1941562 28 100.0 32 ............................ ATGAGCCAGTCGTATTTCATCTTGTTTTAGTA 1941502 28 100.0 32 ............................ AGGCAGTCGGAGAGCAGGAAAACACGGAAATC 1941442 28 100.0 32 ............................ GCTTGCTGTTGCTTTGCTTGTGCGTATTGCAC 1941382 28 100.0 32 ............................ ATTTGAAAAATCTATCCCTAAATCTTATGTAC 1941322 28 100.0 32 ............................ TCTTTGAAATGACAAAAAGGTATTATGAGTAC 1941262 28 100.0 32 ............................ ACAAGAAAGCGTGGACTTAATAGAGTTACTAG 1941202 28 100.0 32 ............................ TTCCCACGATGCCAGCGAGCAAGAAACAGAGG 1941142 28 100.0 32 ............................ GTCCATCCTTGCGTTTCCTTCCTTGTCGTATG 1941082 28 100.0 32 ............................ ATTTCGCCTTCAACGTCATGCGATAAATTTTT 1941022 28 100.0 32 ............................ GCTTGAACTTCTGCGACTGCTCTATCGGATTG 1940962 28 100.0 32 ............................ TTTGGCTTCCAATGGCGTTGTATTAACAAAAA 1940902 28 100.0 32 ............................ AGTCGCAACATTCCCGATTGACAAGTAAAGAC 1940842 28 100.0 32 ............................ ATATTCTGTTTGACCAAAGCAATCATTTGAAT 1940782 28 100.0 32 ............................ TACAAGTCAAAATTTTCTATTTCTTTGACAGC 1940722 28 100.0 32 ............................ ATAGATGTTACGTTAGACCAAAGTCATTTGGG 1940662 28 100.0 32 ............................ TTGCAGCGAAGGAGAAGTGCCATAATGTACAA 1940602 28 100.0 32 ............................ TTCACAACGCCTGGGTTAGTGCTAGGAGCAGA 1940542 28 100.0 32 ............................ TTCGCGTCTTTAATCTGTATATTCGGGTGTTA 1940482 28 100.0 33 ............................ AATAAGGTCGAACTGCTACACTAAGTTTACACC 1940421 28 100.0 32 ............................ ACTACATTCTTTAATACTTGTGCCATTTCTTA 1940361 28 100.0 32 ............................ AAATAACCGGATTGAACCTTCCCGAATAACAC 1940301 28 100.0 32 ............................ TAATGCAATTATCATGAATAATACTATGCACT 1940241 28 100.0 32 ............................ TCCTGATTATGTTTTATCCAAATGTAAATTAT 1940181 28 100.0 32 ............................ ATTACGACAACATAGAAGGCATAACCACAAGG 1940121 28 100.0 32 ............................ TGTGCAGCTATTGGAGGCTTAGGGGCTAAGTT 1940061 28 100.0 32 ............................ GCTGCTTATATTGGCGGCGACCTTTAAGATTT 1940001 28 100.0 32 ............................ TTACAAAGCCTGCTGTATGCGTCTTTTAATAA 1939941 28 100.0 32 ............................ TTGATGTTCGTGCGCCCTATTCGCAGTTATTA 1939881 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 54 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACACCTTGACAGAGGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAGGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAATGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAAGTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAAAACAAGGTAAATTCCTTGAATTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : TTCAGAAGATTTGCCTTCATCGAATTCTGGAAGTTGTCAAATTGATGCAAAATGAAGCGGAATTAACAAAACAGCTATACCGTTACGCAGCAAACCGAACTCAGTATGGCAAATTTATTCGTGAGCGAGAAGCTATAGATAAGGCCAATATATTTTTAAATCATGGCAATTACCTTGCCTATGGTTTAGCGGCAACAACGCTGTGGGTTCTTGGGATTCCTCACGGCTTTGCTGTTATGCACGGCAAGACACGTCGCGGTGCATTGGTATTTGATGTAGCGGATTTAATCAAGGACGCCCTTATTCTGCCTTGGGCATTTATCTGCGCCAAGGAAAATAGTAGCGAACAAGAGTTTCGCCAGCTAAGTTCACTGCCGCACAGGCAGCTTAGAAAAGTACCACGGCACAAACACCGCCTGAAAGTTGGTTCACTGCCGCACAGGCAGCTTAGAAATACTACGTCCTTAGCTCTTAAGTCTTTTGTGCGTTCACTGCCGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //