Array 1 4636-4865 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGJK01000059.1 Methanosphaera stadtmanae strain PA5 PA5_contig_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4636 30 100.0 36 .............................. GTGCTAAATAAAAAGGCAATAGCGAAATATGCAACA 4702 30 100.0 37 .............................. TTCTTCATCACAACAAGTAACTACGCTCCAATGGTAT 4769 30 100.0 37 .............................. AGTACAAGTTTAGGTGTTAGCTACGGTCAGGATTATG 4836 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 AATAGAATAAGATCATAATGAAATTGAAAT # Left flank : GCATAATCTGGAGCAGTTGTTGCCCCCCCCCCCTCCTCTAAGGGTATTTTCAAATTCCACATCTTTATATTGTGGTGCTTTTTGTTTTTTGTTGGTTACATCCCAACCTAATGCTTCAAAGAAGGGGTTTATAAATTCTATTTTTGTGTTTTCTTCGTCATATTGAGTACTGTCTTTATAGATATATTCATTTCTTTGGAATTTTTCCACTAAGTTTATTATTGTTTCAGGAGCAGTCATAAAATATTACACCATTTCCACCTAATATTATAATATTTATTTTAATTCACTAAAGAATGTTTTTACGAAAAAAAATATAAAAAGTAGTTATATGTATGGGTTAAATTTTAATAATTAATATCCATAGCTTAGTACATTTCCTTTCTTATCTACTACTCTTTGATACCCCTCATCATAAGTTACTCTTTGATACCCATCATCAAATGTTTCCCTACTTTTTCATTTTTTTTGTGTTAGTAGTATAGTAGTAAGTAGTAAGT # Right flank : TGTATATTCTACTGTTTCTACTATTTCTACTGAGTAGAAACTATTATATTTACCAAAGTAATATATTACAATAAGGAGGTTTTAACTATGGTTTTAATTAAATCAATAAAAGTAAGTGAAAAAACTCATAAATTATTAACTAAAATTTGTCCTAAAAATAAATCATACAATGACATAATATATAATGCATTAATTCAACAATACACAGAAAAAGAATACCTAACTGACGAAGAAGCTGAATATTGCAATAAAATGATAGACCAATTCGAAAAAGGAGATAATACTGATACATACACAATAGATACTGATAATTTAGATAAAGAATTAGATGAATTGGAAAAACAAGGTGTACTATGAATTACATACTACAATACACTAAACACGCCTTAAAAGACTTGAAAAAAACAAAAAAGAAAAACTTACACGATTACAATAAATTAAAAGAAGATTTAGAAAAACTAAGACAAAATCCCTACACCTCAGCAAATATTAATATAAAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGAATAAGATCATAATGAAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 5711-6071 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGJK01000059.1 Methanosphaera stadtmanae strain PA5 PA5_contig_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5711 30 100.0 37 .............................. GGGAATATTTATCTTGCATTACAAGGTATTATTCAAA 5778 30 100.0 37 .............................. GTAGTGTTATAACATTTCTTTTTAGTTATTTATTACA 5845 30 96.7 36 ......................T....... TTAAATACTACTACCTACAGAAATAATATTATGAAA 5911 30 100.0 36 .............................. TGTTGTCTTATTGCAGTTAATACACTTTGAATTAAA 5977 29 93.3 35 ................-G............ AGTATTTAATATAAATAATAACTATTTGTTAATAA 6041 30 76.7 0 ................CT......AATTT. | A [6044] ========== ====== ====== ====== ============================== ===================================== ================== 6 30 94.5 36 AATAGAATAAGATCATAATGAAATTGAAAT # Left flank : GTGTACTATGAATTACATACTACAATACACTAAACACGCCTTAAAAGACTTGAAAAAAACAAAAAAGAAAAACTTACACGATTACAATAAATTAAAAGAAGATTTAGAAAAACTAAGACAAAATCCCTACACCTCAGCAAATATTAATATAAAAAGTTCTAAATGTCCCAGATGTAAACGTATGAAATCAGGAACGCACAGGATAATATATTATATTCATACTACTAAACCAATAATAGAAATAGTAATGATAATTGAACGAAAAAAGAACTACAGAGATTTTTAAAAAAAATATTTTATGATCTTCAAAAAAATAATTATTTTCATTCAAAAAAATAAGTTAGTGCTGAAGTAATTAAATTATTGAAAAATAGGAGTGGTGGTTATATCGTGTTAGTTAATTGAAATGTGTTTTTAATTCTTTTAAAATATGCTGTAAAATATAATCCTGTTGTTTAACATCATTACTTAAACCATATTCTTTAATAATATCTTCTTTC # Right flank : TTAATAGAAAAAGTGTGTTTCATGGGAAAAAGATTTTTTCTCCCATTACTATTTTTTTTTAAATTCCTTAGTCATTGAATTTTCCTAGGAATTCTTTTATTCTTGGATTGTTTGATTGGAATACTTCTTCTGGTGTTCCTTGTTCTTCTATGTATCCATTTTCCATGAATATTATGTTGTCTGCTACTTTTTTTGCAAAGTTCATTTCATGTGTTACTATTACCATTGTCATTTTTTCACTTGCAAGATCTTTTATTACTTTTAGTATTTCTCCTGTAAGTTCTGGGTCCAGTGCAGATGTTGGTTCATCAAAGAAGAGTATGTCTGGATTCATTGCTAGTGCTCGGGCTATTGATACTCTTTGTTGTTGTCCTCCTGATAATTCACATGGATATGCATCTTTTTTATCAGGTAGGTCCATTTTTTCAAGTAGTGCTTCTGCTTCTTTGTATACTTCTTCTGGGTTTCTTTTTTGTACTTTTATTGGTGCATTTGTTATG # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGAATAAGATCATAATGAAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //