Array 1 8524-10341 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWKT01000011.1 Riemerella anatipestifer strain RCAD0388 scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 8524 47 100.0 30 ............................................... ACACTGGACAAGCATGAAGTATGGCACCTT 8601 47 100.0 30 ............................................... AAGTACAATCAAGATGCATCTATATCATTG 8678 47 100.0 30 ............................................... ACACTGGACAAGCATGAAGTATGGCACCTT 8755 47 100.0 30 ............................................... AAGTACAATCAAGATGCATCTATATCATTG 8832 47 100.0 30 ............................................... CAAGCAGAAGCAAAACAGCTCTACTCCAGA 8909 47 100.0 30 ............................................... CAAAAACTCCTGCATGGAAATTCAGAGAAA 8986 47 100.0 30 ............................................... AGAAAGCACTGCTAGTAGCAGGACGGGGCT 9063 47 100.0 30 ............................................... TGGTTTCGACTTCTTCGCACGCTGCTCGAT 9140 47 100.0 30 ............................................... AGCTGACTCTTTGTTACCTGCACTAGTAGA 9217 47 100.0 30 ............................................... GCCACTGATTGAGTGGTATAACCCATATTT 9294 47 100.0 30 ............................................... GAACAAAATGGAAGTAATGATGTCCACCCA 9371 47 100.0 30 ............................................... CACCAACATGTCAGACGCACTCAAATATTT 9448 47 100.0 30 ............................................... TAACATCAATAAGCTCTTCACCACGCCCAA 9525 47 100.0 30 ............................................... AATCGGGCTTTGCCCCAGTAGCACAGGCGC 9602 47 100.0 30 ............................................... TGTCGTTCGGGTTTTACGACTAAGACTTTG 9679 47 100.0 30 ............................................... TGTTTTAAAAAGTCATTAAAAAAAAGGCTT 9756 47 100.0 30 ............................................... AACCAAGCTACTTTTTTGCCTGAATATTGG 9833 47 100.0 30 ............................................... CTTTGGGTACGGTAAGTTCTATGCTTCAAA 9910 47 100.0 30 ............................................... AAGCAGATAACGGAAGATTTCAACGAGGGT 9987 47 100.0 30 ............................................... TAGAGCAGGTTTTCATTTGTATTACTATCT 10064 47 100.0 30 ............................................... TAACCCACTCCTCTTCGTATTCTTCATTCT 10141 47 100.0 30 ............................................... TATTTTGTTCTTGCACACATAAAATTTCTG 10218 47 100.0 30 ............................................... ACTACGGAGCTAACTAAATATAAACAGCTC 10295 47 91.5 0 .........T..............G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 24 47 99.6 30 GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGTATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 9795-8031 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWKT01000021.1 Riemerella anatipestifer strain RCAD0388 scaffold21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================================================= ================== 9794 35 97.1 31 ...........T....................... CCGAAAAGGGTAAGGCTATGCTATCAGAAAG G [9777] 9727 35 97.1 30 ...........T....................... CATTCTGTAAACATCTTCAACAAAGATAGC 9661 35 97.1 31 ...........T....................... CTAGGCGAGAATGTTTATAAGGAACAAGGTA 9594 35 88.6 79 .....................C.T...T...G... TCCGCTGAAACTACAACAAAGCGTGAGCTAACATGAGAGCAGTCCCAACAATTAATCGCTGGATGTTAGGGGTAGCGGA 9478 35 85.7 81 .......G.............TT....T...G... TCCGCTGAAAATACAACAAAGCTCGTGAGCTAAAATGAGAGCAGTCCCAACCGAAAATGCGGTATTAAAAGAAGTACAACA 9360 35 88.6 81 .....................CT....T...G... TCTGCTGAAAACAACAACGAAGCCGTGAGCTAAACTGAGAGCAGTCCCAACTTAAAATGATAGAGGTTATCTACGGCACTA 9242 35 85.7 80 .....T...............TT....T...G... TCCATTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTCGGCATCTTTCAAAATAGGCTGGAATGT 9125 35 85.7 80 .....................C.T...T..A...A CTCCGCTGAAACTACAACGAAGCTGTGAGTAAACTGAGAGCAGTCCCAACCAGATGTAACGACAGGAAAAAAAGAAATAA 9009 35 88.6 80 .....................TT....T...G... TCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACCCTCAAACTTCAACTTGTTGCTGGTAACTC 8892 35 88.6 80 .....................TT....T...G... TCCGCTGAAAATACAACAAAGCTGTGAGCTAAAATGAGAGCAATCCCAACGCATTATCGTACTCTGTAACACGAACGGCA 8775 35 88.6 80 .....................TT....T...G... TCCGCTGAAAATATAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGATTGTCGTTTTAAGTGTGATACCCACAAG 8658 35 100.0 30 ................................... TCTTTTTGAGTATTCATGTTAATTTCATTT 8592 35 100.0 30 ................................... AACTCTGCCACACAAGTTGCACAGCTAGAT 8526 35 100.0 30 ................................... TATTCCTACAAAGGATGTTTTGTCCACAGA 8460 35 100.0 30 ................................... ACAGTGCCCAGATCGTTACACCATTCGTGC 8394 35 100.0 29 ................................... TTTACGATGCTGATATACACGCTTATGGT 8329 35 100.0 30 ................................... GAAAACTTTTTTATGAAGCTAAGAAAGCAA 8263 35 100.0 30 ................................... CTTTCAGAGATGGGACAATGGTTTGTGGAA 8197 35 100.0 30 ................................... TGCTGAAATAGAAAGATTAGGTGTTAATGT 8131 35 100.0 30 ................................... TGGTACTCCAGTTAGTTTTTCAGCTTCTGC 8066 35 77.1 0 .....................C.T...T.AT.GTT | T [8043] ========== ====== ====== ====== =================================== ================================================================================= ================== 21 35 93.7 50 GTTGTGAATACCCTTCAAATGAGAGCAGTCCCAAC # Left flank : AAGGCACTTATATTAAAATAGACGGCAATGACCCTAAAAATGGTATCGTCTTTAAAAACTTAGACAATCAAAATGAGGTAAAGCTCTCAGCAGAGCATATTGTGCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCAGGGAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTACTGAAAGAACCCCGCACCGAAACACTAAGCACGCCTATTACTATTGTGTAGTGTGTTTTTGGTACTTCTAAATAAAGACCGCCCTTCCTTACATTAAGGAAGGGCAGTCGCTTTATAAGAGGAAGCTACTTCACTGCCTAAGGCGAAGCCTCTTCTCTCGGTAAGACGAAGTCGGTTCCCTCGTACGAGGGAACCGACTTCGTCTGTATTAAGGAAGTGAGGAATTTTCTGTAATAGAATAAATAATATAGCAAAAATCCCTGCTCTGCAGGGATTTTTTTTATGCCCTTAGGT # Right flank : ATGATAGGGTATTGTCTTTTTTGGGGTGCTTGTTTTATCTCGGTGTTTCAAAGAACGCTTTTCTTTACAACGCTCTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTTGCTCAACTCCTGATGCAGCTCCTTCATTCTGGTAGCCACCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGTTCTGCAAGTAGGAGCTTATAAACGATACTACGGTACTCAAAAAACTTATCAGCAATTTCCTTAGACAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGTTCCCTTAGAAAGGCTTGGGCATTGGCTCGGCTAATATAATGAATTTTATGCTTTTGCCCTTTGGAAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATATCTTCGTATTTTTGGCGTTCAATGTTGCCCTTAAGCTCT # Questionable array : NO Score: 4.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-1.35, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: R [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //