Array 1 18273-19686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTNF010000041.1 Roseomonas sp. 1311 Scaffold38_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================== ================== 18273 28 100.0 37 ............................ AGCGCCACGTCGTCGCTGGGGCTGGCCGAGCCGGTGA 18338 28 100.0 50 ............................ TGGCTGGGCAGCAGCTCGGGCAGCAAGCGCAGCGGAGACGCGGTGCGCGA 18416 28 100.0 40 ............................ GTGTTCAAGCGGGCGGTGACCGCCCTGACCTGGCCGGCGG 18484 28 100.0 37 ............................ GTCTTCGAGCCGACCTTCCCGGCCAATGCCTGGGCAC 18549 28 100.0 38 ............................ AGCATCGAGATTGAGACGGGCGACGCCGGCCCGGCCCT 18615 28 100.0 36 ............................ AGGAGCACCAGACACGGAAGCGCCTCTGCCGGCAAC 18679 28 100.0 37 ............................ TCATCCACGAGCCGCTTGGCCGCCTCTTCGGCGCTCG 18744 28 100.0 38 ............................ AATCCCCAGGAACAGCACGGCCATTGCCCCAGGCCCAA 18810 28 100.0 37 ............................ ACCAACGACAAGTGGGTGTGGTCACGCATGCTCGCCG 18875 28 100.0 39 ............................ ACGAGCGCGCCATGATCGACGCCAAGGAGCCCGAGGCTG 18942 28 100.0 37 ............................ CCAGGGGATGTGGTTGATGCGAACGTCAACGTCCATG 19007 28 100.0 38 ............................ CTCGATGACCTCGGCGCTGTCGCCGTAAAGTTGCACGG 19073 28 100.0 37 ............................ GCGAACGAGGTCTACCGCCAGGGCGTGATCCATCGCT 19138 28 100.0 37 ............................ TGCATCTACGGCTCCCTCAACGACAAAGCCCCGGGAG 19203 28 100.0 36 ............................ AGATTCAACCAGTCTTCCCGGTTTCGTGGAAGGCTC 19267 28 100.0 37 ............................ ACGCCTCCGTGCCCTGCTGGCTGCTGGCGCTGAGCAC 19332 28 100.0 37 ............................ TGCGCGTTGACGGCGTCCAGCGCATTGCGGAGCGCAG 19397 28 100.0 36 ............................ TGAATCGCCAGCGGCACCGTCCGCCCGGCGTTCAAC 19461 28 100.0 37 ............................ CGCAACGAGTGGATGTTCTGGGGCATGGCCAAGCGGA 19526 28 100.0 37 ............................ ACGGGCCATCCGTCATCCCGGCTCACAGGCCACGCCA 19591 28 100.0 40 ............................ CAGTGACCTGAATGAGCCTAGCCCCAACATCAACGATCGT 19659 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================== ================== 22 28 100.0 38 GTGAACCATCCCCATGAGGGGTCAGGAG # Left flank : CCGAAGCTCTGGCGCTGGAGCGGCACGTTCTCGGTCTTGGCCAGTACAAACCGTTCCTGCGGTCTGTGTGAGGCCAGCATGTACGTGCTCATTACCTATGACGTAGAGGCGCGCCGGACAAGGCGGTTCCACAAGCTGCTTTCACGCTACCTCGTGCAGGAACAGAATTCGGTGTTTGGAGGTGAGATGACCAATGCAACATTGCTGCGCCTGCACCGGGAACTCGCGAAGATCGCGCGAGACGACGACCGCGTGTTCCAGGTCATAGCTGAAAATCGGCACAATGTGGCCGTCTCGCTGCTCTGCAAATCCGACACAAACGCGACGTTGCAGAACGTTCCGCACGATCACCACATCAAGAATAACATGGTTCTGTGAGCGACTACTCTCCACGTTGGTGCCGTTATGCTACACCTGCGTAGCCTTCTCACTGCCCTATTCCCCGGTGCGGCTTCTCAAACAGGCAGGACCGAGCTAGGTAACTATCTGAAATGACGAGG # Right flank : ATCGCGCCCCGCACCACGGTTCACACCGTGCTCTGAACCGCCCCGGGTTCCCCGGAGGCTCCAACTCTTGAGAGGATGGAGTCATGACAAAGAAGACGTCGAACCGGTATTCGCCTGAGGTCCGGCAACGGGCGGTACGGATGGTGCTGGACCACGGGGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCATCCCCATGAGGGGTCAGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 32155-33769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTNF010000035.1 Roseomonas sp. 1311 Scaffold32_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32155 29 100.0 32 ............................. CCATGCCTGCATCTCCTAAGCTTGCACGCCCT 32216 29 100.0 32 ............................. GCCCGCGTGATCATTGAGATGCCAAAGGGCGA 32277 29 100.0 32 ............................. GTGACGGCTTACATGCTCGCGAGAGACGCCCT 32338 29 100.0 32 ............................. TACGGCCGCGAGTTCCAATACTGCTCGTTCGT 32399 29 100.0 32 ............................. GGCAGGCCACAGTCAACGGCGTTGCCTACTGG 32460 29 100.0 32 ............................. AACTACCGGCGGAATGCCGCGAACACCGGCTG 32521 29 100.0 32 ............................. CGCTACGACCAGGCGTCGCCGACCGAGCGCAA 32582 29 100.0 32 ............................. GACCTGACCGATGGCCTGGTTGTGGACGCCAG 32643 29 100.0 32 ............................. AGGCGATCCTGCGTCAGGGATATGGCGACTGG 32704 29 100.0 32 ............................. GCCGCGAAGAACGCCGCGCAATGGGTCCAGTG 32765 29 100.0 32 ............................. CCCGGCAGGTTCTCGGTGAACCGGCCCGCCTC 32826 29 100.0 32 ............................. CCGTGCCGAATGCGGTCATCGTCGGGCCTGAC 32887 29 100.0 32 ............................. GTGCATCTCCCGCTGATGCGCGGGACCATCGA 32948 29 100.0 32 ............................. ACCGTCGCGAAATCCTTGTAGGGATCGCGCTT 33009 29 100.0 32 ............................. GAGCCCCCGCATGACCCCGCCCGCTGACACCG 33070 29 100.0 32 ............................. ATATCGCGAATGTCGTCACTGAGGGCCTTGCG 33131 29 100.0 32 ............................. CCGACAGCCGTTTCGCGGTTTCTGGCGACCGG 33192 29 100.0 32 ............................. CTAGAGGACGCGATCGCCGAGATGGCCGCCGA 33253 29 100.0 32 ............................. GGCCGCGACAACAACGCCGACATTGCCGCCGA 33314 29 100.0 32 ............................. GTCGCCTCCCAGGAGCAGGCCCAGGCGGCGAA 33375 29 100.0 32 ............................. ATGCAGGCTGGGGGTGGCGGCGCTGCTGCCGC 33436 29 100.0 32 ............................. TTGTAGAGCCAGTCGAAGCGGCGGAACATCCC 33497 29 100.0 32 ............................. CCGTCGCAGGGGCGCTCGCCCTTTATGACCAG 33558 29 100.0 32 ............................. TCCTCGGTGGTGGGCTTGAAGGCGATGGGGCC 33619 29 100.0 32 ............................. GCCCTCTGGGAGATCATGGGCGAGCCGCTGGC 33680 29 100.0 32 ............................. GCCCGATGGGCGAGGCAAATGGAAAGCCTACT 33741 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : GAGGAAGTCCTGGCGGCCGGCGGCTTGCCTCTCCCCGAGGCACCGGTTGAAGCCATGCCAGTTGCTTTCACCGATCCAGATAGGCAGGGCGATGCTGGTCATCGTGGTTGAGAATGCGCCACCGCGACTGCGTGGCCGTCTGGCAGTCTGGCTGCTGGAGGTACGGGCGGGGGTCTATATTGGAGCCTACGGCCGCCGTGCGCGGGAGATGATGTGGGGGGAGGTCTGCGCCTCCATCGAGGAGGGCAATGCCGTTATGGCTTGGCCTGTCCCGAACGATGCTGGCTTTGCTTTCGAGACCTGTGGAAGGAACCGGCGCGTCCCGGTTGAGCTTGACGGGTTCCGCCTTGTCAGCTTTGGCCCCGATGTTGCACTCCCTACCATGCCGGGGCCGATGGCAGGTTCTGGGCGCCGTCCCGGCGGCGGTGGATAGAGGCACTGCGGTCGGTAAGTTCATTGACAATAGAATATGCACGTGAAATCAATGGCTTCTAGGAAGA # Right flank : GCCGCGCATGGCGCCATTCTCCGCCGGCTGCACCAGGACGGACTGCCCCTTGGTCCCGGGGCCATTGGGATGCACGGTGATCCAGCGCGCGCCAGGCAGAAGCGCCTTGAACAGGTCGTAAAAGGCGCTTAGGTATTGCGCTGCCTGGATCGGACGCCTGGCCTCGGCTGGGCTGGCAACCGGGTGGAGTTCTGCTCCACCGTGACCGGATGGCACAGCAAACGGAAGAACCGCGTGGCTACCCAACACCCCGGCCAAAAGGCCGGGGTTTCGGTTTTCTTGAGGGTGTTTGCGTGTTCCCCGCAGGCGCGGGGAGGAACCGGACGAGGCCAGCAACACGCTGGCGCTGACCAGGCAGCAGGAAGGCGGAAACGCCCATCGATGGATGCTTAGGCCTCGCCCACGTTCGACAGATCGGCACGCATCGTCAGTTCGCGTGCGTGCAGTGTCGCAGTGTGTCATTACCGCTGCGCATCAGCAGCACCGGGGACCAGATGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //