Array 1 250039-249607 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JTIH01000003.1 Lacticaseibacillus rhamnosus strain Lrh22 Lrh22_contig00003, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    250038	    36	 100.0	    30	....................................	TTATGCGCGTGTTAGTACGCGTGATCAAAA	
    249972	    36	 100.0	    30	....................................	ACAAAAACGTCCCCGGTGGCAATGGCTATG	
    249906	    36	 100.0	    30	....................................	ACGTCAGATTATTTTTAACACATATAACGG	
    249840	    36	 100.0	    30	....................................	TTCATGTCATCAGTAATGAGCACAACATGC	
    249774	    36	 100.0	    30	....................................	ATTTGAGGTCGTTGACTGTAGGACAATTGG	
    249708	    36	 100.0	    30	....................................	GCTTTGCGAGGGAAAGGCAATGACCGTGTC	
    249642	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         7	    36	 100.0	    30	GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	                              	       

# Left flank :   GAGCTGGATTTGGACAAGTTATTTCAACGCTTGCTCATCAAGAAGGTAAGCCAATTGATAGATGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATATTGGCAGTCTGAGTAAGCTGTTAGATCAGGTTAAGGACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGTAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAAAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGACTGTGTGAAAACACCG
# Right flank :  TTCACTCTCTTCCATGTTCTAAAGTGTAGAGTCTCAGGCAAATATCAGATCAAAAAACACCTTCAGTGAAGACGCTCCTCATAAATGCTATGCAAATACAAAAAGAAGGTAACATCGATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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