Array 1 454723-455143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACADP010000003.1 Leptospira kirschneri serovar Ratnapura strain Wumalasena Scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 454723 37 100.0 34 ..................................... TGCATCTGATTATCTAAAAGATATTATTGAGTCT 454794 37 100.0 35 ..................................... TCGGTCATGACGAGCCCTAGATAGCGAGCAAGTAA 454866 37 100.0 34 ..................................... TGTTCCCGTCCCTTTTAAATCCCTCCACTCTCTA 454937 37 100.0 134 ..................................... TATGTGGGCGGTCTTACGACCACATTTGCCTACTCCATTAGAGTGAAAACGACAAGCTATGTGACATATTTAACTAACTTTAATTTTTTGTTTTTAGCAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGAC 455108 36 73.0 0 C......T..C.A..G...-..A....A.G......T | ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 5 37 94.6 60 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : TTCGATAAGCATATATTCTGAAATACAATCCATTTAGAACAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAATAAGGCCCTACAAATTTTAGAAACAGATTTAGTTTAGACAAAATTCTGTACGCTCTGATTCTATGGTTTCTGAATTAGTTAAGTTTTCAAGTCCAGCGCTTAGACAATCATCTCAACAAGAATGAAAGAACCCTTGAGTTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAAACGCTTTTTGCGAACCTATTTCTCCCGATCTTTTGCGGCCCTTTCGCATTTCAATAGACGGTCGCCATTTGTGGATTGAATGGGTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : TTACCACGGTCTTACGACCATATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTAAAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGGTTTGAGACGCAGAAATTCCCAAAAATCAAGTCGGCCCGGATTATTTAACTTTTTGTGGTAAATCCTACATTCTCAGTTTTTTACAAACTATAATTTGACGTTACGCGAAATGGATCAACGCAGGGAACTTTAGCAGAACGCTCTTTCAAACCAAAGCGTCTCACTTACTGAATGCCGATCTTTAGAGAATCATTCGCTGAGTTTTCTGGATCGTTAAACGGTATCGTGTTCTATAATCAGGTGAATTAGCGCGAAAGGGATCGATGCGGGGTTAATAAATTGCGACTCAAGACGATATGTTGCATTACATTTCCTGCATGCAATTTAT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:0.25, 7:-2.86, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 343822-344069 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACADP010000001.1 Leptospira kirschneri serovar Ratnapura strain Wumalasena Scaffold_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 343822 35 100.0 35 ................................... ACACCCGATGACTATGGCAACATTTTGTCTATCCC 343892 35 100.0 37 ................................... ACCTTTTCTGGATTTTGCAAAGAAGAGATAATAACGT 343964 35 100.0 36 ................................... ACTTTTTACGAGATTCATAATTTGATAGTCTCGTCT 344035 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 4 35 100.0 36 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAA # Left flank : GAGTTCGGCTGAGTAAATATTTTTATAAAAGTATGAGTTCCTACAATTTTAGAAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCCAAACGTATACATGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGTTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCT # Right flank : ACAGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGACAGGTCTTTGTTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTAAATTTCAAATGAAAGTATGGCATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGTGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAAATTCTAGTTACGCACATTCCACATAACGACCTTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTGTTTTTCCTCCATTGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 72-542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACADP010000017.1 Leptospira kirschneri serovar Ratnapura strain Wumalasena Scaffold_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 72 37 100.0 35 ..................................... GTTCGGTAGTAACAGACCTGGCGATAACCCATGAA 144 37 100.0 33 ..................................... TAATAGATTGCGATTTGCTTCTTTATCCGGATT 214 37 100.0 36 ..................................... TATCTCGCGCTATACGGTTACCGTAATGCGAGCCGT 287 37 100.0 33 ..................................... TCGATCGCATTCTATTAGAAGTTTTGAATCTAG 357 37 100.0 35 ..................................... CTCAAAAACAAGAGATTGAAGAAGCCGCAACTGAA 429 37 100.0 34 ..................................... TTTTAACTTTAACGCCGCGGCCTCAAGTTCGAGT 500 37 94.6 0 ..........................A........G. | AA,ACAA [526,531] ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 99.2 34 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : TCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCTG # Right flank : CCAATCTAGAATAAAGTTGGGATCTGGACTTTGTAGATCGATTCTTTAAATGTAGGAACTACTGCAAAATTTCGTTCGGAAAAGTATGATTTAAAATCGCAAAAAAGATAAAAAGAGACGTAATCTGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTGTCGTATTCAAGTGTGGGAACTACTGGTAAATCCACGATTTGTATGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTAGCTTCTATCCTCTGGACGCGAAATCGATACGAGGGAACTTTAGCAGAACGTTCTCTCAAACAAAAGACGAGATATTGTATTACGTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAGTACGGTCCTGCAAAGCAGGATTCGCCTAAACTTTCTTACGCAGAATTCGCATTATTTAGTGTAGACTATCGGATTGGTTTATTATGCAGCTCAGATCAGCGCGTTAAAATTCCCTTCTAACTTTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 377873-378197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACADP010000007.1 Leptospira kirschneri serovar Ratnapura strain Wumalasena Scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 377873 37 100.0 35 ..................................... TTCCGGATTGAAGTAGTAGCCCGCGGGCGCCAATT 377945 37 100.0 36 ..................................... AGAACAAAAAAAAATTCGCAAACATAGGAATCTCCG 378018 37 97.3 35 .................G................... TTCCAAGCAAGAAAACATAGCTCACGCAATTCATC 378090 37 97.3 33 ..........................T.......... CTCACGTTTACGGATTTAGAATCAGATTGGGGA 378160 36 73.0 0 ..C.......A..G...G..G....TT...A.-...G | CC [378185] ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 93.5 35 GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Left flank : TATAGAGAATTTTATTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTACTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCATAAAATTCGTAAGACCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCCGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTATTCTTTGCGAACCTGTTTTTCCCGATCAATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTAGCTTAACAATTGTACAGTATGGTGAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : GTGTCTAAAATTTTGTTCCTGAAACGGAGATACTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGAATTGATTGCTCGGAACAATAATTTCTAAGTTTTGTGAGAGCTCCCACAATTTTAAAAAATTGGAATGTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAAAATAGGAGTTCCTTTTTATTTTTACGGACCAAAGTTTCTCTTTCGGAGAATATCTGGTTTGGTAAATTCTACCATGAAAATTGAGTATTCGTGGTAGTAGTTCCCACAAATTAAGTCTTTTTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTTATAAAATCGGGGCGAATCCCGCTGCGCTTTCCGCTATAGTTAATAAATTGTATAAAAAAACATAATATGATATTTCGTCTTAAGTTACAATTGATTATAGAACCCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 501280-501026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACADP010000002.1 Leptospira kirschneri serovar Ratnapura strain Wumalasena Scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 501279 37 100.0 36 ..................................... TCGTGCTCGTAATGAATAATATGAAAGGAAAGAAGT 501206 37 100.0 34 ..................................... ACATCGCTCTCAGGCATCAAAAAGGCTGCTGCAA 501135 37 97.3 37 ................G.................... CATCGTAACCCCGTTACCGGAGGTTCTTCTTAGAATT 501061 36 81.1 0 ................G.......G..T.-.CA...A | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 94.6 36 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTGGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATTTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTTCGGCCGGTTCGCGTTTAAACGTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAGAGCTTTTTCTAATCCATAAACTTGCACCTTTTCGGCCGCT # Right flank : AACGATTTATTTAAAAAAAATTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCCCTTAAAGTAAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTGAATAAACCATTGTTAAACTTTATAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTGAGTACCGTTAATTTTATCACAAAACACTGATTCCATGCAAAATATTAGGTATTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAACGGTC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //