Array 1 35598-30996 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWPK01000043.1 Rhodovastum atsumiense strain DSM 21279 NODE_43_length_57256_cov_22.5755, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35597 28 100.0 33 ............................ CGATGCGCTTTGCCGAAGCGGCGTGGCGGTTTC 35536 28 100.0 33 ............................ TGACCCAGGTTATCCCGGTGTCGTTGCTGGAAT 35475 28 100.0 33 ............................ GTTGCTCTGCGGGACCGTGAGTTCCGCCAGCAT 35414 28 100.0 33 ............................ TGATGGACGCGGCACCAGTCATCGACCTGGCCG 35353 28 100.0 33 ............................ CGCGGCGATGACCTGTCGCGCCGTCTGCGGCAG 35292 28 100.0 33 ............................ CGCAGCCGGGCCCGCGCCATGGAACACCGGACC 35231 28 100.0 33 ............................ CCGCAGCCGCCCGCCGTGCGCACGCCGCAGCGG 35170 28 100.0 33 ............................ CACGTCGGTGATACCGGTGTCGATCGCGAGAGA 35109 28 100.0 33 ............................ CTTGTATCAGGCAAATTCGTTGCCGCCATTGTC 35048 28 100.0 33 ............................ CCGCAGGGGCGTCAGCAGCCCGCTGAATGTGCA 34987 28 100.0 33 ............................ CCTTGTAGGTGCCCGCCTGCGCGCCAGCCAGGA 34926 28 100.0 33 ............................ TGCTCGTGGCTTCGTCATGGCCGGGCCGGTGCG 34865 28 100.0 33 ............................ CGTCCTCACGCCGTCTGCATGGTCCGCGCTCGC 34804 28 100.0 33 ............................ CGAGCAAAGAGCGCGGGGTTGATCTCGCAGCCA 34743 28 100.0 33 ............................ CCACGACGAAGGGTTGTTCGTCGTGGCTCCGCA 34682 28 100.0 33 ............................ CTCGACGCCGGGCACGCAGACCACGCGCACCGC 34621 28 100.0 32 ............................ CGATCTGCGACATCCAGAAGCGCCGCTCTTGG 34561 28 100.0 33 ............................ CTTCCCCAGAGCGTCACTGGCTCCAGAGAAAGC 34500 28 100.0 33 ............................ CCGATCTCCTGACTGGAGGGACCATGAAAGCCC 34439 28 100.0 33 ............................ CCGCCCCAGTGACTGCGGCAACAGGCGCCCTGC 34378 28 100.0 33 ............................ TGGACTTGCCGACCTGGATTTCGAGCGACCGCG 34317 28 100.0 33 ............................ TCAGCCCTTCTGACGTGTCAGATGTCCTGACGG 34256 28 100.0 33 ............................ CTGGATTTCCACAGCACCGCCGCCGCCGTCCTG 34195 28 100.0 33 ............................ CTGGACAGAAATTGACTGCTGCAGAGGTGGCTG 34134 28 100.0 33 ............................ CGGCAGCGACACCACGTCCACCGCGCTGCCCAC 34073 28 100.0 33 ............................ CGGAGCGTCCGCTTCCAGCCGCGCCAGGTGCTG 34012 28 100.0 33 ............................ CTGGACCAGGCGCGCTCCGCCGTGCAGCAGGCG 33951 28 100.0 33 ............................ CCGGTCTGGGTCCGCGAATCCATCCTCGGCATG 33890 28 100.0 33 ............................ GCACCAGACCGCCGAAGGCGACACCGAGCCGCC 33829 28 100.0 33 ............................ CGCATCGGACAGCAGGTTGATGGATCGTGCCGT 33768 28 100.0 33 ............................ CGGATCGAAGCCCATTCCCAACTTGGGCAAATA 33707 28 100.0 33 ............................ CCAGGCACTCCGCGAACGCCTGCACGCGGCCGA 33646 28 100.0 33 ............................ CCCGCTGCTTGACGACCGGCGTCACACTAAGGA 33585 28 100.0 33 ............................ TTACCAAATATCCGCCACGCTTCATCAACAACA 33524 28 100.0 33 ............................ CGAGCAGTCGCGCCGCTATGTGGACGCGGCTCC 33463 28 100.0 33 ............................ TGTCTGCCCCTACCTGGGGCGAGAGATACCCGG 33402 28 100.0 33 ............................ CGTCGCGTGGCGTGGAGTTGGACAGGCGGAGGC 33341 28 100.0 33 ............................ TTGACTCTCATAGGTGAGGGGGTCGGTTGTTGC 33280 28 100.0 33 ............................ TCAGCCGCATCACCCGCCAGCACTGGCACAGCG 33219 28 100.0 33 ............................ CTCGATCAGGATCTCCATGCCCTCGCGGACATT 33158 28 100.0 33 ............................ CGCACCAGGCGCCCCGACTCCCGAGCGCGCAGC 33097 28 100.0 33 ............................ CCATGTCGTTTCACCGCGCGCATAAACGTATTA 33036 28 100.0 33 ............................ CCGATATCGTTTCCCTGCTGCCCGGATGCGCCG 32975 28 100.0 33 ............................ CAACACCGAGGTCGAGTACCGCTCCCTCGACGA 32914 28 100.0 33 ............................ CCCTCCGCTTGCATGATTGTCGGGGCCGCCTGG 32853 28 100.0 33 ............................ TGCCTTTAAACTAGGCTGCCCCTTCGGAATCAC 32792 28 100.0 33 ............................ CAGATCGCAGTGCCCGGACAGCCGGAAGCGGCG 32731 28 100.0 33 ............................ CAGCTCACGGAAGTGATCCGTCACACCGCGCAA 32670 28 100.0 33 ............................ CCTGTCAATAGATCGCGCGGAGCCACGCGCAAG 32609 28 100.0 33 ............................ CGCCTCATGGCGATGGTGGAGGATGATACCGGC 32548 28 100.0 33 ............................ CCGCCTCCCCCGCTGACCTCGGCAGAGATCATC 32487 28 100.0 33 ............................ CATGAATGCACAGCTCGCCACAGAATGGGCAGC 32426 28 100.0 33 ............................ CTGGTGGACGAGGACGAGGGGCAGGCGCGCGGG 32365 28 100.0 33 ............................ CGTTATAAGGGTTATAAGGTCAGCCCATTACAG 32304 28 100.0 33 ............................ CACTGCATATGGCGTCGGCTCGATTTTCTACTC 32243 28 100.0 33 ............................ GTTCTTCGGTATCTCGCCGGCATCCGCCGCAAC 32182 28 100.0 33 ............................ CGTGGGCAACGTATCCATCGTGCGCGGAGCGTG 32121 28 100.0 33 ............................ CGACGAGCGGCGCCGCGCTGGCGCTGACCGGCG 32060 28 100.0 33 ............................ TGCATGCGAGACTTTCGTTTCCGCGTGCATGAA 31999 28 100.0 33 ............................ CGCGCCCACAGCGCATCGAGGGCGGCGGTCATG 31938 28 100.0 33 ............................ CCGTGTTGGGATCGATATCAGTAGGCATCACGA 31877 28 100.0 33 ............................ CCGTCAGGCCCTATCGGACTATCAGCGTGGTTC 31816 28 100.0 33 ............................ CCGGGTTACCGGTGGAAAACTGGACCCAACCGC 31755 28 100.0 33 ............................ CAAATCGTTCGGCGGCGGCGGATATAATGTCTG 31694 28 100.0 33 ............................ CAGGACGGCGGCGGCGGTGCTGTGGAAATCCAG 31633 28 100.0 33 ............................ CCCATACAAGTCCATTCCAGACGAGACGATGCA 31572 28 100.0 33 ............................ CACGGCATCCACCCTCTATCGCGAGGACACGGG 31511 28 96.4 33 .................A.......... GTTGCATCTCCCGTGCTGCAAAGTTCCGGACGC 31450 28 100.0 33 ............................ TGACCCGCTTTACGAGGATGGGCAGGCGGAGGG 31389 28 100.0 33 ............................ CGATCCAGCCATCCCGGCAGGGTGTGGGTCAGA 31328 28 100.0 33 ............................ CTATGACGATTGCGGATGGACTTGCGGGCGATC 31267 28 100.0 33 ............................ TTGTCGGGAGTGCAGTCGGTCTCGGGACCGGTG 31206 28 100.0 33 ............................ CGGTCATGCTTGCGGTCCCCTCAAGGTCCACAA 31145 28 100.0 33 ............................ CAGCATCACGCCGGCGACGAGCAGGGCGACGAT 31084 28 96.4 33 ...........T................ TGCACGGTTGCCAGCTTGTTCGGCGCGGTCGTC 31023 28 89.3 0 ....................A.C..G.. | ========== ====== ====== ====== ============================ ================================= ================== 76 28 99.8 33 GGCTCCCCCGCCCACGCGGGGATGGACC # Left flank : CGCTCGCCTTTGGCGTTGCGCGCAAAGCGCTGCGCGATCCGAACACCAATCTCGAACGAGAACTTCGTGGCGTCGCCGGACGAATGTTCCGTGACGAACAGGTCATCCCACGCATGATCGATCGGATTAAGGAACTATTCGATGCCGATGACGCTGATCGTAACGCGTGATGTACCGGATCGATTCAGAGGTTTCTTGGCATCGGTCATGCTCGAGATCGCCCCCGGCGTATACACGTCGCCAACGATGACCAACGGCGTTCGGGATCGGGTATGGCACGTACTGAGCGACTGGCACAGTGAGATGCGACAGGGCAGTGCGGTGATGACATGGCGCGACCCAAAAGCGCCCGGTCGGCAGGGTTTGCTGAGTCTGGGGCTTCCGCCGCGGGACCTGCGAGACTATCAAGGCCTTCTACTCGCAAAACGCGAAAATGCCCCACCCAACGACAACCTTGGCTCATTGACAAAGTAAATAATGTCTGTAGCTTAGCGTAGAGA # Right flank : ATCGCTGCTGACCACATCCACTCTCTGGTCGAAATCATTACCAATTTCGCCCGCATGTCATTGGCGAGCCCGCTGGATCGTCCGGTGCTGGCCGGCCCGCCGCGCCGTCTCGCGGCGTTCCCGACATGCGAGACTTCCATGCCCGAGATCCCCCCGAAGGACATCATTGCCACCCGCCAGGACCACGTCGGCCGCTTCGCCGTGTTCCACCAACCCGGCCCCAACATCGTCGCTCCGCTCCCCTGGCAGGCCATCGCGCTCGACATCGGCAACGACGACACCATCACCATCCAGGTTCGCCTCGACGAGCGCCACGAGCCCGGCGCACCCGCCTGGACCGCCCGCGACCTCCTCCGCGTCGCCCTTGGCCGCCAGCTGACCGAGGGCGACCGCAGCGGTGATGCCCTGGCTCGAACCAGCGCTTCTCACCTCGCCTCCGCCCTGGTCGCGCTGCAGCGCCGCCTCGGCCTGCCGCCGGCGCCCTCGATCGCGGTCGCGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCCCACGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 757-3781 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWPK01000119.1 Rhodovastum atsumiense strain DSM 21279 NODE_119_length_7140_cov_16.4085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 757 32 100.0 34 ................................ ATCGCTTCGAGGCGAACAAGCAGGCCAATGAGGC 823 32 100.0 36 ................................ GTGCCGCAGCGCATTCGCCCACGTCGTGGTCATGAT 891 32 100.0 34 ................................ TGGCACCGGGCAATCACGCGCGCATCGTCCCACG 957 32 100.0 34 ................................ TCGATCCTGCCGATCCGGATGAGCACGAACTGAC 1023 32 100.0 34 ................................ CGGGTGGCATTGATGCGCGCCAGGCGCAGGCCGA 1089 32 100.0 34 ................................ GCGTGGACGTGGGCAACCTCGCTGCGGCCGAACA 1155 32 100.0 33 ................................ GGGATCGCCACGCCCAGGCGGTTTGCCAGGCCG 1220 32 100.0 34 ................................ GCCCTGCAGCGAGCGGGTTGCCGTTTGCGTCCGT 1286 32 100.0 35 ................................ CTGATCAAGGTGAACCTGACCCGCACCGTCACATA 1353 32 100.0 34 ................................ GCCGATGCATCCAGATGATCCGCAAGCAGGCGTG 1419 32 100.0 34 ................................ TCGACAACTGAATCTTCGGCAACGCCTTCCGGCG 1485 32 100.0 33 ................................ GACCTACGGCGCGCTCGTCGACACTGGCACGGA 1550 32 100.0 36 ................................ ATCCGCGAAACCATCCGGGGTGCGCGCGGGGCTGCT 1618 32 100.0 37 ................................ CTCCGGCATGGATGGGCTCCGGCGCCGGCGGGATCAA 1687 32 100.0 35 ................................ AGCGGCGGCTTGTCACTGTCTTCCTTGATGCGGAA 1754 32 100.0 33 ................................ GTTGCTTCCATGCACGGCAGACGCACAAGACGC 1819 32 100.0 34 ................................ GTCCATGCACCAAATCTACAGTGTCAATCAGGTG 1885 32 100.0 34 ................................ GTGTTCGCCTTCATCGCCCTTCGATGACAGAGTG 1951 32 100.0 34 ................................ GTGTTCGCCTTCATCGCCCTTCGATGACAGAGTG 2017 32 100.0 34 ................................ GTGTTCGCCTTCATCGCCCTTCGATGACAGAGTG 2083 32 100.0 34 ................................ GTGTTCGCCTTCATCGCCCTTCGATGACAGAGTG 2149 32 100.0 34 ................................ GCTGCTTGCGATCATCCATAAAGGTTGTCGCAGA 2215 32 100.0 34 ................................ CATGGATGTCCGTGGGGCTCGTTCGCCGATGCAG 2281 32 100.0 35 ................................ AGCATGGCGGCACAGGTGGCGGTTGTGGTTGACCA 2348 32 100.0 34 ................................ CGAAATGATCGAACAGGTGAATTCGGCCACTAGA 2414 32 100.0 34 ................................ ATAAGACCTACATGGCTCAGGTCGGTCCTGACGA 2480 32 96.9 36 .....................G.......... GCCGTTAGAGTAGCCCCATCCGTTATCCCGGAAGTC 2548 32 100.0 34 ................................ CAGATGCACTGTTGATCAAGCAGAGGGTCAACGA 2614 32 100.0 34 ................................ TTCAGGACGGAATCCTTCAGAGGGCGTAGCACGA 2680 32 100.0 34 ................................ GTCAGCGCGCCCTCGGCGAGCTGCCAGGGCTGGG 2746 32 100.0 34 ................................ ATGACGAGCTGTTCCAAGACATGATCGACGAACT 2812 32 100.0 38 ................................ CTTGCCGCCGGCGCCGCTGCGATCCCGCCGGGGCTGCA 2882 32 100.0 35 ................................ GCCCCGGCGCCCGGATCTGCGGAGCGCATGAGCGT 2949 32 100.0 35 ................................ CGGCCCGAAATCGTGGAGGGGCCGGTGATCAGCGA 3016 32 100.0 36 ................................ CTGCGACCGGAGCGAATTGACCATGACATCATCATT 3084 32 100.0 34 ................................ CCGATAACGGTGCGAGGCTTGCGGATTACCTGCT 3150 32 100.0 35 ................................ CTTGGATGGAGTTACGATAACAACTCCAATCAGAA 3217 32 100.0 34 ................................ CATCGGCTGTAAGGGGGGCCGCCCCTTGTTCGAA 3283 32 100.0 35 ................................ CCCTTAGGGATGACTCTGGTTTCGCCATTGCATCC 3350 32 100.0 34 ................................ TCGAATCCTAATGGCCGAATCTCGAAACTGTCCA 3416 32 100.0 34 ................................ TTGGGTATCCCCCATCAGAGATGTCTGTGATCAT 3482 32 100.0 35 ................................ CTGCGAACGGCGTGCCATGCCTTGCTGACCCAGCG 3549 32 100.0 35 ................................ TGCAGCGCCCGTGTCGGCAAGACGCAGAGCTGCGT 3616 32 100.0 34 ................................ CGCAGCCGGCCGGCATCTCACCGGACGCGGTGAA 3682 32 100.0 36 ................................ GATCGCCGAGGTGCTCGACGTGCCGGCGATCACGGT 3750 32 93.8 0 ..............................GT | ========== ====== ====== ====== ================================ ====================================== ================== 46 32 99.8 35 GTTTCGATCCACGCCCTCGCACGGAGGGCGAC # Left flank : CCTATGTTTGGGCGCCGGTCGGGTCGCGGCCACCGATGGTGCGCGACAGCCGCCGTGAGTCCGTCTACTTGTTTGGCGCCATCTGCCCGGATCGAGCCGTCGGCGCCGCCGTCATCATGCCTGCGGTCAATACCGAAGCCATGAACGCCCATTTGCAGGAAATCAGCACACAGGTGGCTCCTGGCGCACACGCTCTCCTGGTCTGCGATCGCGCCGGGTGGCACGCCACCAGCAAGGGCCTGCGGGTACCCGCCAACATCACCTTGCTTCCCCTGCCAGCCTACGCGCCGGAATTGAACCCGATGGAGAACGTCTGGGATTACCTCCGCAGCAACAAACTATGCAGCCTGGTCTGGAACAGCTACCAGGCGATCGTTCAGGCGTGTAAGCAGGCCTGGGACTTCCTCGTCAACGACCCGGATCGCATCCGCTCCATCGGCACTCGCGAGTGGGCGTGTGTCAATCTTTAAGCGGGCTGGTATAAGAGAATCCATATAGGA # Right flank : TAAGCGTCAGCCGATGACCGCGGTATTCGCCCTCGGCGCCGAGCGGGTGCTGGGCTACTTTTTCCAGTGCCAGGGGAGCAGTTCGCTGATGCGCTGGATGGGATGATCGGCGATGCGGCCGAGGATATCGGTGAGGTAGGCCTGCGGGTCGATGCTGTTCAGCTTGCAGGTCTCGATGATGGTGTAGATGCAGGCGGCGCGACGGCCGCCGGCGTCGGAGCCGCAGAAGAGGTAGTTGCGCCTGCCGAGGACCGGGGAACGCATGGCTCTTTCGGCCGCGTTGTTGCTCATCTCCAGTCGCCCGTTGCTGACGTAGCGGGCCAGCGCCTTCCACCGCGACAGGGCGTAGCGGATCGCTTTGGCCAGTTCGCTCTTGCCGCTCACCTGGCGGAGCGAAGTCTCGAGGAAGACCTTCAGTTGTTCCAGCAGCGGGGTCGCGTGCTCCTGTCGCACTGCCACCCGCCGTTCCGGCGGTTGGCCGCGAATGGCGCTCTCGATGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCGATCCACGCCCTCGCACGGAGGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 170-333 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWPK01000122.1 Rhodovastum atsumiense strain DSM 21279 NODE_122_length_5922_cov_16.0147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 170 33 100.0 32 ................................. TCCAGTTGACCACGAACGAAGGATTGGAGCGT 235 33 97.0 33 ...........................A..... CGAGCGCGTCGCTTACCGGATGGCGCTGAATGC 301 33 97.0 0 .........................C....... | ========== ====== ====== ====== ================================= ================================= ================== 3 33 98.0 33 GTCGCCCTCCGTGCGAGGGCGTGGATCGAAACC # Left flank : CCCGCGCAAGGCACCGGCCCGCAGCCGGGAGGCGCTGAAACGCAACCTCATCGGCCACATGCGCAGGCTCTCCAGGCTGCCAGCCCGCATCCGAAGCTACTTCCGCCACCCCACATTCCGCTACGCCGCCTGATCCAAGATCGCCCAGGCCGGATCAATAGGGTTCCGCG # Right flank : CTGCAACAGCTCCAGCGCTTCCTGCAGGCCCTCTGTGCCAATGACGATGAGACAAACGCCCCCCGGGGGTTTACCCTTGAGGGAGCAGGAGAATGTCTCGTGGTTATGCGCAACACGAATGCGCAAATGATGGCCGCCGCTAGCGCCGACACGCCGCCGCGCGCCGCCTGGTTGCCGAGCGCGCAGGCGACAAAGGATTTGTCGGGTCCGTGTTCAAGGTTCCAGCTCGCACCTCGAAGCATAACCGGAGATCGACGATGGCTCCCCCCCCTTGGGGGGCCCTCGGCTGCTACACCACGGTCTGGGACACGGCCCCAGGGGGTGCCGGTTTCCTGCGTGATCCACCGCCGCTTTCCAGCGTGGTGAGGTGCCGGTTTCGAGCGTGATCCACAGCCGGTTTGCTCCGTGCTGTACATGCTCCGCTAGGAACTTGTCCCGCAGCACTTCCAACTCGGTGCGCAACCCAGCCGCATTGGCTGCCCGGTCCTGTGCCAGGCGGC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGAGGGCGTGGATCGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1663-3091 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWPK01000132.1 Rhodovastum atsumiense strain DSM 21279 NODE_144_length_3275_cov_16.5122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1663 32 100.0 34 ................................ TATAACAACTTGACAACCGGCGCCGTGATTGCCA 1729 32 100.0 35 ................................ GAGTATGACCGGGTGATCGCGGTGATTTTGGGCTG 1796 32 100.0 34 ................................ TCTTCGGTGGCCACAGTCTCGGCAGTCGAGGCCG 1862 32 100.0 34 ................................ CAGGCACCGTCGATCCCGACACTGGTCCCATCCA 1928 32 100.0 34 ................................ ATGGGCATGGCGATGGTGCCGGCCTCGAAGGAGG 1994 32 100.0 34 ................................ ACCGGCAACGGGATCCTGATGGTGTCGCCGAGCA 2060 32 100.0 36 ................................ CTCGGGCCGGTGCTGCGGCGCGAATTCCTGCAGAAG 2128 32 100.0 34 ................................ TGCGCCGGCTGGATGATCGGCGCCATAATGGGAG 2194 32 100.0 35 ................................ AAGTGGCCAGGCCAGCGGGTCAAGAACCAGAACGG 2261 32 100.0 35 ................................ TCTGCCGTGTTGATCTCCAAACATCCGCTGCGGGT 2328 32 100.0 34 ................................ CAGCCTCTGATCGGATGGGGCGGAACAAATCCAC 2394 32 100.0 34 ................................ AACGTCATGGGCTGGAACGTGCTCATGACCCACG 2460 32 100.0 34 ................................ GCTCGGAAGTGGCCGTTACACTCACTGATGGGTG 2526 32 100.0 34 ................................ TTAAATTTGCAGCCATTTTTTGGCGACGATCCGT 2592 32 100.0 34 ................................ ATGAACGAGGTGCGCTGCACTGGCGAGCGCGGCG 2658 32 100.0 35 ................................ TTGGTCGGGATGACGCGCAGGTAGCCGCCCTCCGG 2725 32 100.0 34 ................................ AGCGCCCCGCTCCTGCTTCAGCAGCTTGCGCAGC 2791 32 100.0 34 ................................ ATCTACCCGGAATCTTCACGCGCGCGCGCGCGAG 2857 32 100.0 35 ................................ ATCGGCATCGGTCGGTTCCGGCCTGAGAAGGGAGG 2924 32 100.0 36 ................................ TGAGCCAGGGAAGCCGTATTGCCCAGAGCATCGGGC 2992 32 100.0 36 ................................ CGCTTCGTCGGCGCCGGTCTGCCGGGCGAGTTCGAG 3060 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 100.0 35 GTCGCCCTCCGTGCGAGGGCGTGGATCGAAAC # Left flank : TGTCTCAAAGTCGTTGACACGTTCCGCTTCCGCTCGCAGGTCCTCGCAGCGCCAGCGCACGACCTGATGCACATCGGGATCAGGTCCCTGGATGACCAGATCTTTCAGCTCGGCTTTCTGCTCAGCGGTCAGAAAGGGTGTGCGGCCGGGGCTGCTGCGCGACTTCAGGCCATCGACTCCCTCATCATTGTACCGCTGCACCCAGTCCCGCAGCGTCTGCCGCTCCATGCCGCTCTGTTCCGCCGCCTCGGTGCGCGAGCGGCCTTCCAGAACCAGCGCCAGCGCAAGCAGGCGGCGCACTTGCGGGCCATCATCACTCTTGGCAGCCAATGCCCGCAATTCAGCGGCTGTGTGGTCCGCCCGCGTAATCGCCAACGCCGCGCCCATGCACTGCCTCCTCCGCGTATCGCCTGGGAACCATCGAATCGAGATCGACCGGGAGTGGCAATTCACAGAAGAGTCAACGTCAAAGCGGGCTGGTATTAGACATCTGTTCCCGC # Right flank : AGGGTTGATGGCAGGTTCAACGTCTTATTGATCCGGCCTGGGCTGTCTTGGAATGAGGCAGGGCTGCGCCCAGGTCTGGCTGATGAAGCACCTGGACATGCGGAGCTTGGCGCCTGCGGCTCAAGAGGAGCGTCGTCGGCAGGTGATCGGGCTACGGGAACGTGGCTTGACCTACGCTGAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGAGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //