Array 1 130027-131184 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYE01000006.1 Listeria seeligeri strain Ls13-001 Listeria_seeligeri_Ls13_001_Contig06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 130027 36 100.0 30 .................................... TGGACATTTACCGCAATGTTACACATTCAT 130093 36 100.0 30 .................................... TCATTTGGCGTTACATCCGCACATATTGAC 130159 36 100.0 30 .................................... AGGAATTAGCGCGCTAAATAACGAGTTGCG 130225 36 100.0 30 .................................... TCAAAACATTATTATGTCGTCCGAGTACAT 130291 36 100.0 30 .................................... TGGAATTTGATGGGAAACATCAAGTAATAC 130357 36 100.0 30 .................................... TGCTATTTTTGCAGATGCTGCACTACTTAG 130423 36 100.0 30 .................................... CACAAGCACAAAAGGATTTAGTGCTTAATA 130489 36 100.0 30 .................................... CTTTGATAAACAAGAACAATTAGTCTATTT 130555 36 100.0 30 .................................... GAAACGTCGTGAAATGCTAATTAAGGTAGC 130621 36 100.0 30 .................................... TCGCTTACCTCGTTGTTCATGTCCCACAGT 130687 36 100.0 30 .................................... TACCTTTTGCTGCTTCATAGCTTGTTTCAT 130753 36 100.0 30 .................................... GTAAGTTTGTGCATTTAACAGCTTTGTATA 130819 36 100.0 30 .................................... ATGATTCTGCAAAAAAAGAATTAGAGGACT 130885 36 100.0 30 .................................... AAAACGGTGGACCACAATCGGAACCGCAAC 130951 36 100.0 30 .................................... TGGTGCAATAATAATTTCTTTGTCCCAAGT 131017 36 100.0 30 .................................... ATGCTTTGGCCAATCAAGCTAATTCTTATA 131083 36 100.0 30 .................................... AAAAGATAGTTTGGACTTTCCGGAATTTTA 131149 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGCGCAGTAATGGCAAAGCATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 41887-42175 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYE01000019.1 Listeria seeligeri strain Ls13-001 Listeria_seeligeri_Ls13_001_Contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 41887 29 100.0 36 ............................. ATCTTCAAATAGAACTAGTTTCATTTTAAGTTCTCC 41952 29 100.0 36 ............................. TCAGATTGATTATAATAGATTGTCCGTTTTTCTGTT 42017 29 100.0 35 ............................. TTAAACATGATTCGTAAAACGGCGATTGTTAACGC 42081 29 100.0 37 ............................. CCAGGACTAGGTGCAACTGTTGCCATTGCAACGTTTG 42147 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 100.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGAATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAAGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : TTTGAGTTTAAGGTTACGTTCCTTTTTACTAGCTGCGATAACACCCATTCCCCGTCATAACAGGAAAAAATACTAGGAGATGATGCTTTGATTATTGACGTTCTACAACATGTGCCGCACGAAGGACCAGGACTTATTGCGAAATGGGCGAAAGAAAATCAACATCAATTGAAAGTTCATAGTTTATTTAATGAAAAAGATCAAGTTCCAACTGATTCGGAATTTTTAATCATTCTAGGAGGACCAATGGGAGTGAGTGATACCGCTGAATTTCCATGGTTAGAAGAAGAACGAAACTTGATAAAACAACTAATAGAGCAAAACAAACCGGTTTTTGGTGTATGTCTTGGAGCGCAACAAATTGCAACAGCGCTAGGAAGTACTATTTCGATGAATAGTGAAAAAGAAGTAGGCTGGTTCCCAGTTAACAGAATCTCCACTGAACTATCATTTTTTCCAGAGCGACTAGATGTTTTTCACTGGCATCAAGAGACTTTTTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 47714-48196 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYE01000019.1 Listeria seeligeri strain Ls13-001 Listeria_seeligeri_Ls13_001_Contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 47714 29 96.6 34 .......C..................... GAAGCCGAATAGGCTTATTTTTTTACGACAAATA 47777 29 100.0 37 ............................. CCCGGATAGCAATATTGTCCGTGACGCTTTGAATTAT 47843 29 100.0 35 ............................. TCGTTCTGTTCAGCGTGTCAATACTCGACTTGAGC 47907 29 100.0 35 ............................. TAGCATTTGCTTTAGTTAGTAAATTTTGCTGAAGA 47971 29 100.0 37 ............................. ACTACTGATTGCGCCTTCATGGTATGATCGTATAAAG 48037 29 100.0 36 ............................. CCTGTCCCACCGACGACGAGCGCATGCGGATTAGCA 48102 29 100.0 37 ............................. GTGATCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 48168 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 96.1 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCATAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAAAGTGGGGGATATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGTCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCACCCACCCTCAACCTCCCATTTTTTTCGTCCAGCGAAAACCATTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTCTAGTAGGGTGTGGAAGTGAAGAAGCTTCAAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAATCACTTGATAGCGAAAAAGCACCAGGATTATTCACTTGGTGGAGCGGGAAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //