Array 1 235623-236786 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029019.1 Candidatus Sulcia muelleri isolate SMPLAKAE chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================================= ================== 235623 28 71.4 2 ....C......GA..CT....AGA.... AA T [235639] Deletion [235653] 235654 28 67.9 215 ....C..TT....A.CT.G..A.A.... GATATTTTTCTGCACAAAGACAAGGCACAAATAAATCTAAAGAAAGAAGTGAAATAACAGGTAGTACAAAAAAAATTCAACGTCAAAAAGGAAGTGGAAATGCAAGAAAAGGAAATATAAAAAATCCTCTATTTAGATCTGGGGGAAGAATTTTTGGCCCTAAACCAAAAAAATTTAATTTTAAATTAAATAAACTTTTTAAAGTGTTAGCTAAA C [235660] 235898 28 75.0 39 ......TT.....A.TT....A.A.... AAAATAAAGTAAAAATATTAGAAGATTTTTTTTTAAAAA 235965 28 92.9 16 ...AA....................... AAACTCTTAATTTAGA C,AAAA [235974,235984] Deletion [236009] 236014 28 89.3 28 ...AA.......A............... AAGATAAAAATTTTTTTATTGCTTCTAG T,T,AA [236031,236034,236039] 236074 28 82.1 59 .....T...G..A.....C.......G. ATTAAATATTTTTTATTTAGCAAATTCTGATTATTTAATTTTTTTTGAAAGCGTTTTTA ATGTAATT [236091] 236171 27 85.7 153 ......T...-.G..........A.... AAAAATTTGATCCTTTTTTTACTTTTAAAGTACCTTTATTTTATAATAAAAAAGAAATTAAAAAATTAATATATAAAATATATAATATTAATTTTAATAATATAAAAACTATGATTTATTGTAAACGTACTTTAAGTAAAAAAGGAGTTTTAA TT,A [236177,236195] 236354 28 78.6 15 ....A..G..A...A.....T..T.... TTAAAACAAGATTAT AAAG [236371] Deletion [236397] 236401 28 100.0 17 ............................ TAAAGGCTAATTTAGAG Deletion [236446] 236446 28 96.4 17 .................G.......... TAAATTCTAATTTAGAG Deletion [236491] 236491 28 92.9 23 ..............A........T.... ACTTTTCTTATTTAGAATTAGAA 236542 28 100.0 26 ............................ AATATTTTAATTATTTTAATTTAGGT 236596 28 85.7 17 .TT.......A............T.... AATGTTCGAAGTTAGAG Deletion [236641] 236641 28 96.4 38 .G.......................... AAAGTTTTAATTTTAATTTATCTAATAAAAAAGAAATT 236707 27 71.4 24 ..........AAAA.-G.C....A.... AAAAAAACCGATTACTTCAAGTCA 236758 28 71.4 0 .....C.....AA.A...TC...T...G | G [236760] ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================================= ================== 16 28 84.8 46 AAATTAAAAATTTTTAATAAATTGAAAA # Left flank : AAAAACTAATAAATCTTTATTAGGTCATTTTAAAAAATTTAAATCTACACCTAAAAAAAAAATAGTGGAATTTTCATTAAAAAAAGAATTAAAATCAGGATATATAATTAAAGTAGATATTTTTAATGAAAACGAGTTAGTTGATATTACAGGTTTTTCTAAAGGAAAAGGGTTTCAAGGAGTAATTAAACGGCATGGGTTTTCAGGTGTAGGAGAAAAATCTCATGGTCAACATAATAGATCTCGTGCCCCGGGATCTATAGGTGCTGGGTCTGATCCTTCAAGAGTTTTTAAAGGAACTAGAATGGCTGGCAGAATGGGAAATAAAAAAGTAACTATAAAAAAGTTAAAAATATTAAAAATCGATTTATTTAAAAATTTATTAATTATAAAAGGATCAGTTCCTGGCACTAAAAACTCTTTTTTAAAAATAAAAAAAACTTAAAAAATGAAATTAAATATTCTTAAGAAGAATGGATTTGAAACAGGAAGATTTTTAA # Right flank : GAAATTACAAAACATTTTCCTGAAAAAACTCTTTCTAGAGGAAAAAATAAAACAGGAGGTAGAAATAATGGTGGAAAAATGACTATAAGATATAGAGGGGGAGGCCATAAAAAAAAATATAGAAGAATAGATTATAAAAGAAATAAATTTGGGATTACGGCTATAATAAAATCTATAGAATATGATCCTAATAGATCAAGTTTTATATCTCTTTTATTTTATAAAGATGGAGAAAAAAGATATATTTTATCAATTGATGGATTAGAAATAGGAAAAAAAATTATTTCAGATAAATATACTATTCCTGAATTAGGCAATGCAATGTATATTATGAATATTCCTTTAGGAACTATAATTTCTTGTGTAGAACTTTTTCCTGGAAAAGGAGCAATTTTTGCACGGAGTGCAGGGGCATATGTGCAATTAATTGCAAAATCAGAAAAATTCTCTACTATAAAATTACCTTCTGGAGAAACTCGGATGGTGTATTCAAACTGTAT # Questionable array : NO Score: 3.30 # Score Detail : 1:0, 2:0, 3:3, 4:0.35, 5:0, 6:0.25, 7:-1.54, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTAAAAATTTTTAATAAATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:96.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [39-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //