Array 1 981426-982918 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023304.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4551 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 981426 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 981487 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 981548 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 981609 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 981670 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 981731 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 981792 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 981853 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 981914 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 981975 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 982036 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 982097 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 982158 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 982219 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 982280 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 982341 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 982403 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 982464 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 982525 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 982586 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 982647 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 982708 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 982769 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 982830 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 982891 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 999050-1001014 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023304.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4551 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 999050 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 999111 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 999172 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 999233 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 999294 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 999355 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 999416 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 999478 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 999539 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 999600 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 999661 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 999722 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 999783 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 999844 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 999905 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 999966 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1000027 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1000088 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1000149 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1000210 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1000271 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1000333 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1000436 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1000497 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1000558 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1000619 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1000680 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1000741 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1000802 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1000863 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1000924 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1000985 29 96.6 0 A............................ | A [1001011] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //