Array 1 588525-588033 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020773.1 Staphylococcus lutrae strain ATCC 700373 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 588524 36 100.0 29 .................................... AAAGATACGGGACGTCTCATTGTCGATGT 588459 36 100.0 29 .................................... GCTTCTGATTCGATAATTTGCGTGTTAAA 588394 36 100.0 29 .................................... TCAAAAACTTGATGCAGGTGAATATGGAT 588329 36 100.0 30 .................................... TGGTTCGTAAATATCCCACAGATAATGTTC 588263 36 100.0 30 .................................... AATGAATGAGTATCCTCACAAAATCGAAGT 588197 36 100.0 30 .................................... ATGTATAATTTAATTGCTTCCTTATCTTTA 588131 36 100.0 29 .................................... GAAAACAATTTAATCAATGTGGAAGCATT 588066 34 83.3 0 .........................-.TC-..G..T | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.9 30 GTTTTAGTACTATGATTTTTTAGAAAGAAGTAAAAC # Left flank : CGTAAAAGAAAAGCTTTCATCGATTTAATGCGTAAAAAAGAGAAAGAAGAAATACTTGTTGTACTCTATCCAGAATCATATTTAGGCATCAAAGAGATTGAAGATTTTTTGACGATGATAAAAATGTATCAGTTGACAACATTAGTATTTACTAATCATCCGTCTGTTATCATGAGCGGCGATCATGCATTTTTATGTAAATCAAATAAAACGTGTCATGATTTAAATTTAATTAAAGAAGAATTGAAGCTCTTTATGCCTGAAGAAATGATTACTTCCAAAATGGTTCATTTGATAGCATATCATGAATTTATAGGGGATAATTTATTAGAACTTGGACAGTATTTTAAGTTTATCAATCAATATGAATGAGTTATAATTACGGTGTAAAACGTATTATCTCGCGAAGTCAATGGTATGTTCAACTAGGAAGAAACTGATTTTCGAATGGTTTTACTTTAATTATAGTAGTAGAATCGCATTGATTTTTTATATTTGAG # Right flank : TTTATGCTATAGGTTTCATGATTTGAAAGGCATTTATTCATATTTTTCAAGAAATAATGTTTCATAGATATACCCAGAGTAGGGGTGTGAGGTTTACTGCTTATACTACTGGTCTTATAATCAAATTCCCGGTGACATGCGAAATATGTCGCCTTTTAATATTGTTTGAATTTTTATCCTTTGTTTGCTTTTTATTCGATGAATGTATTTCATTTCACACCTTTTACATCGAATCCATCGGAATTTTGTTTACATTATGGTGATTTTCGTGTGCAACAGATATCTTTAAGGAAACAGTCGTAATCAATTTTAATACGTTAAAATAACAAATTTTATAATACATATGGATTGAACAAAGTCCAATGTTTTTTCCTGTAAATTGGTATGACACACCAAACGAGTGATTATGGAAAATGGAAGGGATAGGAAGGTCCATGATATAATAGGCTCAAATATATGCAGAATGAACGAATATAGAGAAAGTAGGGAGCGTATGAAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTATGATTTTTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1522665-1523229 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020773.1 Staphylococcus lutrae strain ATCC 700373 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1522665 36 100.0 30 .................................... TCAGCTTGTGCATCTTCTTTTAATTGTTTA 1522731 36 100.0 30 .................................... ATTCGTTATCATTCGGAAAGATAAAACCGA 1522797 36 100.0 30 .................................... AAAAAAGTTTTATCAATCCGCAGCTTAGTT 1522863 36 100.0 30 .................................... ACAAAGTGTATGCACTGTGCTATACTTAAT 1522929 36 100.0 30 .................................... AGGAGTTAGAGAATACTTTCGACAACTGGC 1522995 36 100.0 30 .................................... ACTCCACGCACCTGAGGGGCTTTCGTCTCT 1523061 36 100.0 30 .................................... ATAGTGATGTTGGCGAGCCTAAATTAATTT 1523127 36 100.0 31 .................................... AATAATCAAAACTCGATAAAAAAACTTTAAA 1523194 36 94.4 0 .............T...............A...... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.4 30 GTTTTAGTACTCTGTTATTTTAGGTATAAGTGATAC # Left flank : TTGGAACATGTGCAGGTCTCATTGTCCTTGCGAAAGATATTGTTGGAGAAGAAGGTTATCTTCAAAAACTAGATATCACCGTAGAGCGAAATTCATTCGGTCGTCAAGTGGATAGTTTTGAAGCTGAACTCGATATCAAAGGTATAGACCAACCTATTGAAGGTGTATTTATTCGTGCCCCTCATATCCAATCGGTTGAATCTGCAGTTGAAATACTTGGAGAAATTGATGGAAAAATCATCGCTGTACAACAAGGCCGTTATTTAGGTGTCTCTTTCCACCCTGAATTAACAGATGATTATCGTATCACACAATATTTTATTGAGCACGTCATGACACACGCATAAAGATAAAACATGCCGATGATGTAAGGAATCACGCCACTTCAACATTAGTGATTCAGTACGGAGGCATGTTTTTTTGATTACAACCTATAATTTATTGTGCACTTTTAAAAATGAGTGGCAATGTGAATGGAATATAGTATAATGTATCTAGAG # Right flank : CATGAATGGTTTTAATATAATGACGATTTGAACCGTGAGTGATACGTTGAGGGGCTTCCTTAATTATCAAAATCGGTTTTTGAACTATGTTGTTTCTGATGTGTGAAACAATGTTCAAAAAAGGCTTGCCATACACTTAATATGTGGTACAATATAATTGTGAGTACTGAAGTGTACTTATACCTAAAATGACAGAACCTACTAAAACAAGACAATATGTCGTGTTTATCCCGCTAATCTATTAGTGGGATTTTTCTATATCAAATGTGAGCGGAGTAGGTTTGGATGAAATGGGAGGGACATGTATGCGTAATAGTTATATATTGGGTCTGGATATCGGTATTACTTCTGTTGGTTATGGCATCATTGATCGTGTCACAAGAGAGGTTATCGATGCAGGTGTCCGTTTATTTCCAGAGGCCAATGTTGAAAATAATGAAGGACGAAGAAGCAAAAGAGGGGCGCGTCGTTTAAAAAGAAGACGAATTCATCGCTTAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTTATTTTAGGTATAAGTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //