Array 1 159299-159737 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP046028.1 Staphylococcus chromogenes strain 1401 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    159299	    36	 100.0	    30	....................................	TCTAACTGCATTCTCCAGCGTCCTTGATGA 	
    159365	    36	 100.0	    30	....................................	TGGCCAGAACGAGCAAAACAACAAGGCTAC 	
    159431	    36	 100.0	    30	....................................	TTAGTGAAAGAAGAGGACAAAGAAGAGGCG 	
    159497	    36	 100.0	    30	....................................	CGTTCCCACTCAGCAATTGCCCCGACAAGC 	
    159563	    36	 100.0	    30	....................................	TCTCTCCTCGAAAAATTGGAGGAGAAAGGT 	
    159629	    36	 100.0	    31	....................................	CTTCATTTGGCTTGAATGATTGGATAACTAC	
    159696	    36	  94.4	     0	...........................T.......A	|                              	TTT,CA,C [159722,159729,159733]
==========	======	======	======	====================================	===============================	==================
         7	    36	  99.2	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	                               	       

# Left flank :   GATGACACCTTCATCATTTTCCTCTTTATTATCTTCACTATGACTAGCCGCAATCGTTAAAATATTGTTGTTAAAATCAACACTAATATCAGATTTGTCCATACCTGGTAATTCAGCAGACACGATATAAGCATCGTCACGTTCAGTAATATCTGTTTTAAAGTCGTTTGTATTTAATAAACCTTGTCCAAAGTCTCTAAATAAGTCACTTGGATTCATGTCAAAAATTGAATTGTTAAATGGTTTCATTTGGAATGCCATAAAGCATCGCTCCTTCATATTATCATTATTTCGTCAATATCAAGAAACTGGTTGTGATGAAGGGAGGTAACTGATGTTCTATCCCTTACAAGTCTTATTATAAGACAAAGGTCAAAATTAGTCAAGGTCAAAGTTTGATGTTCATTTTGATCTTAATCAGGATATGTAAATTTTTAGAGAAACCTTTACATATCAAGGGGTTATGCAATTGAGAGAGTTATAGTATACTGTAGCTAGAG
# Right flank :  ATGTACTATAAAATAGAATTGAAAATTATCTTGACTTTATATTCTTACATGTTAGAATATTCTTACAAGTACTTATTGTGCTTATACCTAAAATTACAGAATCTACTGAAACAAGACAATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTATGCTTAATTTATAATTGTAACTAAAAAGGGGGATACATAACATGACGAATTATATACTTGGACTCGATATAGGTATTACTTCTGTTGGATACGGGATTGTTAACAGTGAGACGAGAGAGATTATAGGTGCAGGGGTACGACTTTTTCCAGAAGCAGATGTAAATAACAATGAAGGTCGACGTAGTAAAAGAGGAGCACGCCGTCTTAAAAGAAGACGTATACATCGTTTAGAGAGAGTCAAACAGCTTTTAGCCGAATACGAATTGTTAAATTCTTCATCTATTCCACAAAGCACCAATCCTTACGAAATACGTGTAAGAGGATTAAGAAATGAACT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC
# Alternate repeat :   GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.97%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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