Array 1 60703-58173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFBX010000012.1 Escherichia coli strain KSA138R-A NODE_12_length_132491_cov_261.471310, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 60702 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACG 60641 29 100.0 32 ............................. CCTCATGCGTTTTAGCGGACGGCGTGGAAAAG 60580 29 100.0 32 ............................. TTGTTGATGATGATTATTGGGATGATGAATTT 60519 29 100.0 32 ............................. GCCGCCGCATGGCAAAACAAACATCGGGGTAC 60458 29 100.0 32 ............................. CAAACAAGCCCCGCGCCGCGTTGGCTGAATAA 60397 29 100.0 33 ............................. CGGTGAATTACAGCCTCCAGGGGGAAAATGGAC 60335 29 100.0 32 ............................. TGATCCGCTATTGATTCAATCGCTTCTGACGC 60274 29 100.0 32 ............................. CCGCCAATAATGCGCCCTTCCTCTATTTTCAC 60213 29 100.0 32 ............................. CGCGGAAAAATATTGGCATTGACGGCGATATT 60152 29 100.0 32 ............................. GACCAGTACATCACTTGAGGCAAATACTCAGT 60091 29 100.0 32 ............................. CCGCAGCACCAGCCGCGACGGCAGCCACCCAC 60030 29 96.6 32 ............................C AGATAGGTCAGAGCGCGCAAGATTGGGCGAAA 59969 29 100.0 32 ............................. CAGATATTATAATCTTGCTCCCGTATATAGCT 59908 29 100.0 32 ............................. GCGGCGATTTTCTCGGCTCAAGGACTGATGGT 59847 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 59786 29 100.0 32 ............................. ACAACAGCGACGGAACAGGGCAACGCCTTTAC 59725 29 100.0 32 ............................. TTAAATATATCGTTACCGCTCCTGAATTTATT 59664 29 100.0 32 ............................. CGAAGCTCCTTCCGTTGATTACCAAAACGTTG 59603 29 100.0 32 ............................. TGTCGAGCAACTACATGTTTGGTGTTGATTGT 59542 29 100.0 32 ............................. CCGGGCCGCTGAACGTTTTCCCCGTCGCACCG 59481 29 100.0 32 ............................. AAGGCGGCAGAAATAAAGTAATAAACGGATTG 59420 29 100.0 32 ............................. GTGGACCGGAGGGCGACAGGCAAACCTGTTTT 59359 29 100.0 32 ............................. CATCTGCACCAGCTCGGCACTGATTTGATCAT 59298 29 100.0 32 ............................. TATTCCCCGAATGCTGGTCTGGCTGCTGATAA 59237 29 100.0 32 ............................. CGCCGCGACAAATAATCTCAGCACACCTAAAA 59176 29 100.0 32 ............................. CGAAATCGCACGCGCTTCCCGCATGGGGGAAA 59115 29 100.0 32 ............................. GGCTGCATATGAGCACGAGACACCCAGTAATT 59054 29 100.0 32 ............................. GGCTGCGTATGAGCACTAGACACCCGGTAATT 58993 29 100.0 32 ............................. GCCATTGACCAGCGTTTAAAATCCTCCCGATC 58932 29 100.0 32 ............................. GCTATTACATGTGTGATTTATTACATCTGTAA 58871 29 100.0 32 ............................. TTGACGCCAGCGGCGACCCTCGTCACGGCTTA 58810 29 100.0 32 ............................. CAGTAAATAACGCATTTGATGTTTGTAGTATT 58749 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 58688 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 58627 29 100.0 32 ............................. TAAACTATTCAACTTCATCTCATCTAAAATCT 58566 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 58505 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 58444 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 58383 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 58322 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 58262 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 58201 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.6 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 86952-86251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFBX010000012.1 Escherichia coli strain KSA138R-A NODE_12_length_132491_cov_261.471310, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 86951 29 100.0 32 ............................. TAAAGATGCGCTGGCAACTATCCTGAAAAAAC 86890 29 100.0 32 ............................. TGCTGGACTGGTCAGAAATTGAGTTTGAAGCG 86829 29 100.0 32 ............................. AAAACCAACCAATTGCGGTTGGTTTTTTTATG 86768 29 100.0 32 ............................. AATTACATACTTTTTTAATCAAGGGCATGAAC 86707 29 100.0 33 ............................. TCGGGCGCATTGGGGTATATGAAGACAGCAAGC 86645 29 100.0 32 ............................. GTGTATATCCGAGAAGCAACCAGTTCTGGATT 86584 29 100.0 32 ............................. GTCGGATAACTCTTCATCGGCGCGAATCATGC 86523 29 100.0 32 ............................. AGCGAGGGGCGATTCCGGCAGGGCGTGCACAT 86462 29 100.0 32 ............................. GGCGCGGCGAACTCCAGCACAACCAGCCTGCG 86401 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 86340 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 86279 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //