Array 1 7301-8310 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEON010000031.1 Stappia taiwanensis strain DSM 23284 NODE_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 7301 31 100.0 33 ............................... AACAGGGTGACCGCAGGTGACAACACCCGGGGC 7365 31 100.0 34 ............................... AAAGAACATCGAGCCGGCAGAGACAGCGCCCCCT 7430 31 100.0 36 ............................... GGAGGACAAGAGCCGGATTGAAAAGGCGTACAAGGA 7497 31 100.0 35 ............................... GCCCGGCGATCACGTCCGGATCATCCGGCGCGCCA 7563 31 100.0 34 ............................... AGAACAAAATTCTCCGGACGATGAATACAATATG 7628 31 100.0 34 ............................... GTCGCGGGGCATGCTTGCATTGGCGCGTATCCTG 7693 31 100.0 33 ............................... AGCCAGTCGGCAAACGCCCCGGCAGCCGCCCTT 7757 31 100.0 34 ............................... TCATACAGCGCAGATTACGATCACGACCCTTTTG 7822 31 100.0 34 ............................... GCGGAGGTCTCGAGCCTCCTTGATGAGATCCGTA 7887 31 100.0 34 ............................... GGAGGTGATCGCCATGACGCCGCGCGAGCTGCCT 7952 31 100.0 34 ............................... GAGGGCGACCAGTGGCAATTGACCCATGACGCGC 8017 31 100.0 35 ............................... ATCAACTACAAGGGCGCCGATCAGTTCGACAAGTC 8083 31 100.0 35 ............................... CGGGTGCGGGAAGCCCGGCCGGACTCGAGCGGCAA 8149 31 100.0 34 ............................... GAGGACATCCCGACGGCCACGACCGGCGTCTCGA 8214 31 100.0 35 ............................... CCGCTGCTGCCGGCATTTGATGGCGCCGGCGGGAT 8280 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 16 31 100.0 34 GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Left flank : CGATGCTGGTGCTTGTGACCTATGACGTGCGCACGTCCGATGCCGGCGGGCCCGGGCGATTGCGGCGGGTCGCCAAGGCTTGCCGTGACTATGGGCAGCGCGTGCAGTTTTCGGTCTTCGAGATCGAGGTGGATCCGGCGCAGTGGACCCGGCTCAAGGCACGGCTGGAAGCGGCGATCGACCCGGAGGCGGACAGCTTGCGCTACTATTATCTTGGCGCCAATTGGCAGCGGCGGGTGGAGCATGTCGGCGCCAAGCCGGCCACCGATCTCGGCGGAACGCTGATCATCTGAGACCGGGAAACCGGCGGAGGTCCGGGCCAGCGCGAACCGCAAGCGTGTCCGGATTCCCCGGGAGGTTCGCGCTGGCCTTACAGGGATGAAAAAATTTGTCTTTTTCCAGACAGGTGCGGCATGGGCGATGATTTGTGGACACGTTTTGCAGAGGTTCGCGCTGGCGAACGATTTTTCTTTGATCCGGCAACGTGATAGGAGGGGGAC # Right flank : TCGCGGTGGCGCTGATCAGCGGGCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.10,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38924-38228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEON010000020.1 Stappia taiwanensis strain DSM 23284 NODE_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 38923 36 100.0 30 .................................... GCGCGGTTCTACGATCAGTTGGTGCATGGA 38857 36 100.0 30 .................................... TGGTCGGCCGTCTGGATGCTCAGGCGATCC 38791 36 100.0 29 .................................... TAGTCGAAGGTCACCAGATCGACCCCTTT 38726 36 100.0 30 .................................... GGCATGAGATGCGGAATCTTCACGCCGTCG 38660 36 100.0 30 .................................... GCGCCCGCCTGTGGCCGTTCGTGCCCAACT 38594 36 100.0 31 .................................... CGCGCACAGGCCGCGCCCTCCATTCTCGACG 38527 36 100.0 30 .................................... AGCTGGAGGCGGACAACAAGCGGCTGACCG 38461 36 100.0 30 .................................... TACCCTAACTACGTCCCCTTTGTGGCGGCG 38395 36 100.0 30 .................................... ACGGGTGGTCGCGATTGCCAATCGACCGGG 38329 36 100.0 29 .................................... AGGCTCTTGGCGTAGTCGTCTTCGGACAT 38264 36 88.9 0 ......................G......A..G..A | G [38238] ========== ====== ====== ====== ==================================== =============================== ================== 11 36 99.0 30 ACGGTAGCAGTTCAGAAAACGCAGGCCAACCGCAAC # Left flank : GCGCCCGAACCGCTCGTTCTCGCCGGTTTGGGCCGGGAAGGGGAGGCGCTGTCATGACCACCCTTTACACGCAGAAACGGGGAGAGCGGACAGCGCCGACATACCTGTCCGCTTACAGGCTGATGTGGATGCTCGTGACCTTTGACTTGCCGGTGGAGACGAAGAAACAGCGTGCCGCCGCGACCAAATTCCGGCAATATCTGCTGGATCAGGGTTTTGAAATGAGCCAGTTGTCGAACTATCTGCGGCTGGTCAATGGCCTGGAACAGTTCGAGGCGCATGTGCGCCGGATCGAAGCCAATCTGCCGGAGCGGGGCGATGTCTTCATCTTTCAATTCACCGATCGGCAATACGAAAACATCGTCCGCTTCAGCGATCAGTCGCGCCGCGCGCGGAAAAAGAATCCCGAACAGATCGCGCTTTTCTAGCAAAGGCTGGGCGAATTTGCCGCCGAGAAAGGCCCAATCCGCTTGGGTTTTCAAGGGATTGGGCCCTTATCT # Right flank : ACGCCGGAGCGTTGGGCCTTCCGACCCAAACACCCCGGCGCTCCAGAGCAAGGCTACCGATTACTTTTCGGCGCAGGCGCGGATCTTCTCCAGATCCGGACCGTTCGGCGTGCGGCCGAGATTGAACGGTGCGGAGGCATCGCGCCAGCCGCTGTAATCCTGCAGGTAGCTGAGCTGGCTGAGGTAGACCTTGGCCGAGGACGGGTTCTCGCAGGCGGTGTCCTCGATCACCTTGTTCGCCATCTGCTGGACCTTCTCCAGCGTCTCGTCGTCATAGCGGGTGATCTCGACGCCTGCTTCCTGGAACTGGCGATAGGCTTCCGAGGCGCGCTTTTCGGTGAAGGCGAGCGACCACAGCAAGGTGGCGTCGGCTGCGATCTTCAGCTTCTCCTGGGTCTCCGGAGACAAGGCATCCCAGGCCTGCTTGTTGATCATCACCCCGAACACCGAGGCGGACTGGTGCCAGCCCGGGGTCGCCCAGTGCGAGGTGACCTGATGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGGTAGCAGTTCAGAAAACGCAGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37117-35784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEON010000018.1 Stappia taiwanensis strain DSM 23284 NODE_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 37116 31 100.0 33 ............................... GATGACGCAGAACGGCCTGATGACCCGGAACGA 37052 31 100.0 33 ............................... GCCATGATCATCGGCAGATCCTGCGGCTTGGCG 36988 31 100.0 35 ............................... CGCTAGCGATAGGGACAGCGATCTATTGCGAGATA 36922 31 100.0 37 ............................... GCGCTTCGCAAGAGGTCTGGATTTCAAAATCGGGCGC 36854 31 100.0 34 ............................... GCGCTGGCATGGATCAGCACTGGGCCAAGGCGCG 36789 31 100.0 34 ............................... AGACAATCCAATACATGAAAGATACAGCGTTGAT 36724 31 100.0 34 ............................... CTCAGCGCCGTAGCGGCGATGGAGGACGCGGATC 36659 31 100.0 33 ............................... CACCGTTACGGGGGACGTGACGCGCGGCAACTT 36595 31 100.0 35 ............................... ACCGCGCTCACGCTCACATGGGTGCTCGATGAGAC 36529 31 100.0 35 ............................... TTCGGCGATTTGCCGTGCGCGCTCGGTAAGGACGT 36463 31 100.0 34 ............................... GTCGGAGCGGGAAAGGTCCTTGAAATCTCCGACG 36398 31 100.0 34 ............................... CAGTAGACGTAGTGCCCGGCGGTCAGCACCTCGC 36333 31 100.0 34 ............................... CGGCGTTGAGGCGGCCGAGCCGCAGCCGCCGGCG 36268 31 100.0 33 ............................... ATCTCGGCGATCCGCTCATTGAGCGCCTGGATC 36204 31 100.0 34 ............................... ACGGCGGCTTACGCAAGACCGCGAGAATACAAGG 36139 31 100.0 34 ............................... CGCGTCTGGGGTTTCCTCTGCAATGACACGAGCC 36074 31 100.0 34 ............................... TCGATTTCTGAAAAGGCCACCGGCCGCCACCCCA 36009 31 100.0 33 ............................... TGGACTCCTACGGCACGCCGCTTGCCCTAGCCG 35945 31 100.0 33 ............................... CACCAGCACCAGCGCGCCCGACTGAATCTCCAG 35881 31 100.0 36 ............................... TGTTCAAGCGCGAAGGAGGCCTGACGGCCGTTGACG 35814 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 21 31 100.0 34 GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Left flank : TGGCGGCCCGGCGGGTGATCGCTTTCAAGCACGCGTCCCCGCTCGGCAACGCGCCGGCTCATACCCTGTTCGACCGGGTCGAGGTGCGGCGCCGCTCCAATGGCGATTGCTATCCGCTCGGTGATCCGCGCCTCGACAACCAGCCGCCGGCCCGGCGCTTCGAGGACTACGAGGTGCTGCTTCACCGCGAGGCCCTGCCGGAGGGGGTGGAGCTGATCGAGGTGCTGTAGCTCTTGTCTTTGCTGCAAAGTTGCGTGGCGGCGCCCCCGATCCGGAGGGCGCCGCCGTGCCGTTGGGGGAGCGGGGAAGCGTCGCTCGCCCCGCGCGAACCGCAAGCGTGCCGGAAAACCCCGGGAGGTTCGCGCTCCTTCTAGGTTATTGAAATCGCTGATCTTTTTTCTACGGGCGGGGCCGCCCGACCCTGCGCTGCGCGTCAAGCGAGGCAGGTTCGCGCAACGCGCCCGATTTTGTTTGGTCCCTCAATATGATAGCAAGGGGAC # Right flank : ATGGACGGCCGCAAGGCTCTGTTCGCACGGATCCGTCGCCCCCTGATTGGGGGGGGCGGGGTCAGGCCGGGGCGGGCAGGGCGCGGGCCTCGCGGAAGGAGACCAGCCGCCGGGCCTGTTCGTCCCACAGGACGAGCTTGATGCAGCCAAGGCTCTGGCGGAAGGTGATGCGGCCGATGTCCCGCAGTTGCGGGTGGTCGCGCAAGACCTGCGGCAGGCGGTAAAACGGCACCTTGCTGGACAGGTGATGCACGTGGTGGATGCCGATGTTGCCGGTGATCCACTGCAGCACCGCCGGCAGGTCGTAATGGGAACTGCCATGCAAGGCGGCATGCTGGAAGGTCCAGTCGTCGCCCTCCGACCAGTGGGTCTCCTCGAACTGATGCTGGATGTAGAACAGCCAGACACCGCCGGTGGCGGCCATCAGCGTGATCGGCAATTGCACCATCAGGAACGGGCCGAGGCCCATCAGCCAGATCAGCCCGGCGACCGGCAGGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 143773-143161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEON010000015.1 Stappia taiwanensis strain DSM 23284 NODE_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 143772 31 100.0 34 ............................... CGCCAGGACCATCGCGACGCCTCGATGATTGGCC 143707 31 100.0 33 ............................... GCCGAGTCCACGCCGATCGTGTAGAGGTTGATC 143643 31 100.0 34 ............................... CGAACGGTGTCCAGTTGCTGTTCGTCGGCATCCG 143578 31 100.0 33 ............................... GTGCGCTCATTATGGGGCCGTACATTGGGTGTT 143514 31 100.0 35 ............................... TGGCGTCATGATGATCTCGGACGGATCGACAAAAA 143448 31 100.0 33 ............................... GTTGCGACAGCATACCAGCCATTCGGCTCAAGG 143384 31 96.8 34 A.............................. CGCCGATGAATTTATTTTTGGTGGCGGTGCGGTG 143319 31 100.0 33 ............................... CCTGAAACGGATGATATTTCGGGCGGCCGGTCG 143255 31 100.0 34 ............................... GGGTGCAGCAGCTCAAAACGGCGGGTGGTCAGGG 143190 30 71.0 0 ........-..G...........C.GCCTCA | ========== ====== ====== ====== =============================== =================================== ================== 10 31 96.8 34 GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Left flank : ATCAGCACCCAGACCAGAACGCAGGACAGCAGCGCCAACACGAAGGAAAGGTTCACCGGTGCTGAGCCGAAATCCACCCCCGGAAGGATCGATTGCAGCAGCGAGGACCCTCGATCCGATCCCGCGCGCGCAA # Right flank : GCCGCCGGAGGGCTGGCCCTGCTGTTGGCGCAGCAGCGACAGCAGCAGGGTGTCGGCCCGGTCCCGGTGCTGCTGGTGCAGCCGGGTTGCCTCCGCCTCATCGCCGGCGCGGATCGCCGCCAGGATCGCCCGGTGCTCCTTGTCGGAGATTACCGGCAGCGGGCGAAGCCCGGCGATGGCGATGCGGGCGCGGTATTGCTGGTCCCAGAGCTGGCGCAGCATGCCCTGCAGGCGCGGGTTGCCGCAAAGGGCGACCAGTTCGGCGTGGAACAGATCGTCCAGCTCGGACCATTGCGCGATGTCGCCGCGTTTGGTGGCCCGTTCCATCTGGCTGAGAATGCCGTCAAGCCGCTCGTAGTCGGCCGCGCTGATGCCGCGCCGGGCTGTCAGTTGCGCGGCCTTGACCTCCAGGGTCGAGAACACCTGGTAGATCTGCTCGATCTCCTCGATCGACAGCGCCCGGACGGTGATGCCATGGCGCGGCCGCACGTCGACAAGCC # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //