Array 1 20888-20127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIA010000028.1 Actinomadura namibiensis strain DSM 44197 Ga0415225_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20887 29 100.0 32 ............................. CGATCGTTGAAGCTCTCGCAGCCGAGCGAGCC 20826 29 100.0 32 ............................. CGCGCCGCCGTGTCCTACGACACTCCGTATGC 20765 29 100.0 32 ............................. TACGAGCGCGACCACCCGCGCCCGTCGACGGC 20704 29 100.0 32 ............................. ACCTGCGCGGTCCATTCGGGGTCGTCGGCGTG 20643 29 100.0 32 ............................. ATCGAGGTCGGGTACGACGTGCCCGACGTCTG 20582 29 100.0 32 ............................. TTACATATCCGGCTTTTCTGGGGCATCTTTCC 20521 29 100.0 32 ............................. TCGTCTACGTCGAGACCCCCGCCGGCGACATC 20460 29 100.0 32 ............................. CGGCTCCGCGCCCGACGAGAGGGGAGCGACCA 20399 29 96.6 32 ............................T CAGGTGCGTTGGGTGCGGACGCGGAACCGGGC 20338 29 96.6 32 ............................A TCGACGCGCACGGCGATCAGTACCACCCCGTC 20277 29 100.0 32 ............................. GGCGACAGCGAGGCCTTGGTCGTCCAGGCCAA 20216 29 100.0 32 ............................. TCCCACCACCTGGCGGTCGTCAACGCCAGCGG 20155 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTTCTCTCCGCGCGAGCGGAGGTGGTCCG # Left flank : CCCTGAACCGGATCGTCCAGCCCATACTCAGGCGCTGCAGCAACGAGGTCCTCGTAGAGCTCTTCGACAAGAGCCTGAAACGACGGAGAGACCTTCCCCAGGTCATGCAGGCCAGCCCAGAAACAGATAAGAGAGCGCGCCTCTTCTCTGGAGATCTTGCTGAAGGGACCAGACTGAAGTGCGGGAAGTCCATCAACCCACGCATCCCAGAGGGCTCCGGCCACTGCAGCGGTGTCGACGAGGTGACAGACCGCAGGGTAAGGGGCTGGGAGCCCAGCGTGCTTGCCCCACAGGCGCGCATCAACACTCAACATCTGTGGAGGGCCTTGAGGCGGCATGAGCAGCTCCAAAACGGCAGCACTGTCATCGCCCACCGCATCACATGCCACCGACAGAATGCGAGGAGCCCCTCTAAGCTGCTTCCATGACCGCTGTTCACCCGCACCGCAGTGTGAGGTTGCAGAATGGTAACGGTGGTCTTTAAGTGCAGGTCAGTAAGT # Right flank : GCGTGGACGACCATGTGGATGTGCGGTTGAAGCGCTCCCCGCGGGGGCGAGGGCGGGCTGGCTTCAGGGGCGCTTTCGTTGCTGTGGTGACCTATTTGGGCCCCAAGAGCATTTGTGTTCGCCGCAACTTTGGAGATCGTCCAGGTCGCGCTAGGTGCGCGAGTAGGCGGGCAAGCGGACTGTAAATCCGTCGGCTTAGCCTACGCAGGTTCGAACCCTGCACCCGCCACCTCAGTGGGAACGGCCCCTGACCAGCACGTATGGTCCGGGGCCGTTGGCCTTTCCGGAACCCGCCAGTGCAGCCGGATGCCACGATGTGCCGCCGTCTGTCGCTGGTCGCGGGATATGCGCGGGATGAAACCAAGAGAGTTTTCCCAGGTGGCCCCAGTAATAGCGAAGGGCTCCGGGATGACCCGGAGCCCCTCCGCCCGTCGGCGCGTATTCGGCACGATCACTCGCCCAGCGCGCCGTCGATCCGCTTGTTCGCCTGCTCCTGCTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCGAGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30200-31754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIA010000028.1 Actinomadura namibiensis strain DSM 44197 Ga0415225_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30200 29 100.0 32 ............................. GTCGTCATCCCGCAGTTCCGCCGCCAGACCGC 30261 29 100.0 32 ............................. GAGCGGATGATCGTGATCGCGGGCTATGTGTT 30322 29 100.0 32 ............................. GGACAGGCGCGGTGACCACCGTCGACACCCTC 30383 29 100.0 32 ............................. GGAGGAACGCAGTGCAGATCACGCGCCAGGTC 30444 29 100.0 32 ............................. TAGTACTTCGACGGGACCGCGTGCGTCGGCTC 30505 29 100.0 32 ............................. CGCACGCAGGAGCTTGGCGATGCCGTAGTTGT 30566 29 100.0 32 ............................. TCGGGGTCGGCGCCGTCGTGGTCGATTTCGAG 30627 29 96.6 32 ...........................T. AGGCGATCGCCGCCGCCGCGCAGATCCTCGCC 30688 29 100.0 32 ............................. TCGTAGTTTCCGGCGCCGCCCGCCGACACCCG 30749 29 100.0 32 ............................. TGTTCGAGGACGGCGAACAGGTGGCGGGGATC 30810 29 96.6 32 ............................T CACGGTGCGCCGACCCAAACACGTCAGCGGGT 30871 29 100.0 32 ............................. ATCCTCGCCGGGCTCGGGCCTGCGCTCGCCCA 30932 29 100.0 32 ............................. TTCCGGCTCATCACCCAGGTCCCGCTGATCGG 30993 29 100.0 32 ............................. TACAGCGTCACCAGCCAGCAGGCGCGTGCGCT 31054 29 100.0 32 ............................. TCGTCCCAGTCATCCTGATTGATGCGGATGTG 31115 29 100.0 32 ............................. GGCTGCGGTGCGGACGCGCCGATCGAGTGGCC 31176 29 100.0 32 ............................. GCGCCGCCGGGCCTCGGGTCGTGGTGTGGTCG 31237 29 100.0 32 ............................. GCGGCACAGGCTCCCGGCCGATCCCCGAGTTC 31298 29 100.0 32 ............................. CCCGTGATCCCGCGCGCGGCCAGCTCCTCCCA 31359 29 100.0 32 ............................. AGTTCTGGGAGCCAGTGATCGAGAAGGCTCTC 31420 29 100.0 32 ............................. CTTCCTCCGGCTGTACGGCCAGCGCGAAGACG 31481 29 100.0 32 ............................. GACACCGCGGCCGCGCAGGAGTGGCGGCGGAT 31542 29 100.0 32 ............................. GACACCGCGGCCGCGCAGGAGTGGCGGCGGAT 31603 29 100.0 32 ............................. TGTGCGCACTGTGGGCGTGTCATAGCGGTGCG 31664 29 100.0 32 ............................. CCGCCGCGCCGATTCACGTGCGTTCCCGGCGT 31725 29 89.7 0 ........................C..GT | A [31749] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.3 32 GTTCTCTCCGCGCAGGCGGAGGTGGTCCG # Left flank : GTTCCGTCTCCTCCCCCGCATCGTCGCCGACATCCAATCCCTGTTCGTCCCCGACGACGGCACCCGCCAAGAAGACGCCCTGGACGCCACCGAGGAGCTGGTGGACCTATGGGACCCCGACTTCGGCCGCATCGCTGGCGGCACCAACTACGGCCAGGAGTGACATGGCGACCATGACCGTCATCGCCACCACCGCCATTCCCGACCACCTCCGCGGCGCCCTCACCCGCTGGATGCTCGAACCCATGCCCGGCCTGTACGTCGGCACCCTGTCCGCCCGTGTCCGCACCGAACTGTGGTCCGCCATCACCGCTTCCATCGGCGACGGAGTAGCTGTCCTCCTTCACCCCACCGACAACGAACAGGGCTTCGTTCTTCACACCGCAGGCCAACGCCGCCGTTCCCCCATCGACTTCGACGGCCTCACCCTCATCGCCCTGAACCCGGTGGAGCAAGATAACGAAATGGCAAACCCATAGAAGAGCTGCAGGTCAGTAAGT # Right flank : ACAGGGCTGTTTTGTCAGTGGGGTCCGGTAGGCATTGGGGGTCCGTCCGTTGACCGTGCCCTCCGCAGTTGCGGCTTCACGGCTCAGCGGCACCACCAGAACTCCTTCTGGGAGTCGAGCTGTGAGGAGGACTAATGGTTACCGCACTGGTGTATGTGCCAGCCAAATCGCAGGAAAACCTGCGGATCGGTATCGAGCGGTCGATCTGGGGATGGCGAGAGGAAACCGTCGCCAAGGGCGGCACCCTGCAGGTGCTGAATGATCTCAGCGAGGGTGACTATCTGCTCCTAGGTCGTGTCCGGTGGATCACGATGTGATCCAGAGCAGGGTGCTGACCAGGGTGACGGCTGCTTGGTAGTGCGCGGCGAGTTTGTCATAGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCAGGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 103523-102234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIA010000016.1 Actinomadura namibiensis strain DSM 44197 Ga0415225_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 103522 37 100.0 35 ..................................... TGCCAAATCGTTCGGGCGCCCTCCTCCCCCCAGCG 103450 37 100.0 37 ..................................... TTCGCGGGTGGCGTCCACCGGGACGGGGGCGTGGATT 103376 37 100.0 34 ..................................... ATCCTGGCCGGCGGCACGACCGCCTCGGACATCC 103305 37 100.0 35 ..................................... TGGTTGGGCAGCGCGCCCAACCCGTCCCGCGCCGA 103233 37 100.0 35 ..................................... CCCGAGCTGTCCGTGGCGCTACACGCGCCTCACCT 103161 37 100.0 35 ..................................... TCGCCGGTCGGGCCCTCGCCGAGGAACGGCTCGAC 103089 37 97.3 38 ...............T..................... AACCTCTCGGACGGGACCCGTGCCGTCTACGTGCTGGC 103014 37 100.0 35 ..................................... ATGCGTGCGCGCGCGGAGGCGGAGGTGCGCGTGGT 102942 37 100.0 39 ..................................... AACGTCGCGCCGGCCACGTCGGACGTGGTGGCCACGACG 102866 37 100.0 38 ..................................... GCTGCTGGCTCATCGGCGGGGGCTCCCGTCCGGCCAGT 102791 37 100.0 36 ..................................... GGATTCATGCCTGCGCCACCGCTTCCACCCGCCCGG 102718 37 100.0 39 ..................................... CTCACCGACTGGGCACGACTGATCAAGGCGCTGTCGCGG 102642 37 94.6 37 .....................AA.............. GAGGACACCGGCATCGACTACTTGTTCCTGGACGAGG 102568 37 97.3 38 .........A........................... GTCCGGCTCGGCCGTCACGGGTGGGCCGTAGGCGCCGA 102493 37 94.6 37 .....A................A.............. GTGTGGGTCAGCGGGATCGAGCGGGTCGGCGGCGACC 102419 37 100.0 37 ..................................... GGGTCCACGTAGACCGGCAGCCCCTGGAGGGTGCCCA 102345 37 97.3 38 ...............T..................... GACTGGTGGTGCGACGGCCTGCGCCGCCTGGGCTATGT 102270 37 86.5 0 ...........T...A.......A..G.........T | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 98.2 37 GTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAAC # Left flank : CAACCTCGACTGGTGGTGGAGCCGCGTCACGCTCCGCGACGTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAACGTTGTGTTCACTCTCAGGCGGTGTCGCGCGCCCTGGTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAACACTCCGGTCCGGGCGGGAGGCATGTGCGGGGGCGGGTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAACGTCGCGACGGGCTCCACTACGAGCACCAACGCGAAGTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAACCGCCCGCACCGCGCCGGTCACCCCATGCCCCGGGTGTGGCGCCCGCCCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCGGGGCGGGCGAGGATCGCAACTGCCAAATCGTTCGGGCGCCCTCCTCCCCCCAGCG # Right flank : ATGCGTGGCGGCGGTGGCTTGGCCGAGGCTTCGGAGATGGAGGCCACACCGGCGCGGGCAAGGATCACAGCAATGCCGCTGCTTGCATTACGACGCCGTACGCGGCGGGTGGCGGCCGCCGTCCGCGGGAATGAGCGAGAAGGCATCGTCAAATTTCCGTCGATCAACCCACCGCACCTAAGAGTCACTTGGCTTCCGCTGCCCGTCGCCCTGGAGCGGGATGTCTCAGGACGACGGGTACTCGACGGATGATCAGCAGACTTGTTGGATGAGAGCTTCGACAACATCTTGCAGGTCGGTTAGCGGAAGACGGAGCACTTTATTGGTAGGCGACCCCCAGAGATAGTGGGTACAGGTCACCTGGATACGGAGCTCGTTCAGTGCGATGACCGTGGGCCCGTCCAAGTCGGTGATGTGGATGGGGTGTAGTCCGCGCACCGTTAGCGCCAGAAGAAGTTGCTGTGCGGCGCGTAGTGGGGTGAGGACTGGCGATGGGAACG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCTCCGCGCCGGGCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-18.90,-21.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 104204-103730 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIA010000016.1 Actinomadura namibiensis strain DSM 44197 Ga0415225_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 104203 37 100.0 38 ..................................... CGGGATAAGGGGCGGGCGCCGGTCGAATTCCCGAATGG 104128 37 100.0 36 ..................................... GGCCTGGCCTGGTTCCATGACGGCGCGCACCCCAGC 104055 37 100.0 36 ..................................... CTCGACTGGTGGTGGAGCCGCGTCACGCTCCGCGAC 103982 37 100.0 35 ..................................... GTTGTGTTCACTCTCAGGCGGTGTCGCGCGCCCTG 103910 37 100.0 35 ..................................... ACTCCGGTCCGGGCGGGAGGCATGTGCGGGGGCGG 103838 37 100.0 35 ..................................... GTCGCGACGGGCTCCACTACGAGCACCAACGCGAA 103766 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 100.0 36 GTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAAC # Left flank : CGTGAGCTGGGCGATGACACCACCACCGCACACGCCGAAGTAGGCCGCTTGGCTGCCGCTCTCGGCATCGACCTCCTGATCGCCGTTGGTACTACCGCCGCCGCGATCCTCGCCGAGTCCGCTCGCGAAACCCGCCCCGATCTGCCGATCGAAGTGGTTCCCGACCGCCACACGGCCTACGACATACTTCACGGCCTCCTCAAGTCCGGCGACACCGTTCTCATCAAAGCGAGCCATGCTTTGCACCTGGACGAACTAGCCATCCAGCTTGCGAAGGAGGCGTGAGCGGGTTCCTGTCAGCGTGTGACGCAGGTATGTTCCGTGGTCGCGGCGAAAACATTCGAGCCTGGAAACTGAAGTTCTGCCGCCCTTCGGAACCTCAAGCTCCCATGGAAACCCCAGTAGGTTCTCAACTGCTTATGGCATGATTTGGGGGATATCTCCCGAATTTGTTTTGTACTCAGATGGATGCTCACCGTGATTTATGCTGGTGAGCTACT # Right flank : CGCCCGCACCGCGCCGGTCACCCCATGCCCCGGGTGTGGCGCCCGCCCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCGGGGCGGGCGAGGATCGCAACTGCCAAATCGTTCGGGCGCCCTCCTCCCCCCAGCGGTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAACTGCCAAATCGTTCGGGCGCCCTCCTCCCCCCAGCGGTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAACTTCGCGGGTGGCGTCCACCGGGACGGGGGCGTGGATTGTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAACATCCTGGCCGGCGGCACGACCGCCTCGGACATCCGTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAACTGGTTGGGCAGCGCGCCCAACCCGTCCCGCGCCGAGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCTCCGCGCCGGGCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-18.90,-21.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 119971-118766 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIA010000016.1 Actinomadura namibiensis strain DSM 44197 Ga0415225_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 119970 37 100.0 35 ..................................... GATCACCAGCACGCCCGGGTGCGGCGGGTCGGCCA 119898 37 100.0 36 ..................................... CGCCGTCGGGGCTGGCGAACCTCTCCTGACGCCAGA 119825 37 100.0 35 ..................................... AATGTCACTCTTGACATAGAAGTTTCTTTCAGGAT 119753 37 100.0 35 ..................................... GCCGTCACCGGTCACCTCCCACACCGCCGGTGCCG 119681 37 100.0 36 ..................................... AAGCTAGGCGGCCGCAAGTCCGTCTACGTCCACACC 119608 37 100.0 38 ..................................... GGCCTCGCGGTAGTGCTCGGGTCCGGTCATCACAGGAC 119533 37 100.0 35 ..................................... TACGAGCCGATGACGAGCTTCTCCCGGGTCATCAT 119461 37 100.0 36 ..................................... GCCGAGCCCGCGTTCCGGCCCGCTGGCCTGCACCAG 119388 37 100.0 38 ..................................... GTCTCAACGGGCGAGGGTCTCGGGGATGACGCCGGGGG 119313 37 100.0 35 ..................................... TCTTTGGCCAGGGGAGGGTTTGGCGGTATCGGGAG 119241 37 100.0 35 ..................................... GGGCCGCTGGAATCCAAGATCGGCGGCGACGGACG 119169 37 97.3 36 .............................G....... GTCACCAACCCCGGCGGCGGCGCGACCGCCGCGATC 119096 36 91.9 36 ...........G......-.G................ GAACAACTGGAGCTGCTGTGACCACCGACCAGCGCA 119024 37 100.0 35 ..................................... GTGTACGTCGCGCTGGCGATCACGGTGGTGCCCTG 118952 37 97.3 39 ............T........................ GGCGAGGGCGTTATGGCGGCGATCCGATGGGTGACCGGA 118876 37 89.2 37 ........T...T.G....G................. GCCAACGCCGGGCTCACCGTGGTCAACGCGGTCGCGC 118802 37 78.4 0 ......T...T........G.....A....C..T.GT | ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 97.3 36 GTGGCGCCCGCCCTCCGGGACGGGCGAGGATCGCAAC # Left flank : TGCTGCCCTCGGTCCAGTCCCGCATCCTCGCCCGTCACCTACGCGGCGAACTGCCCGCGTATATGCCCTGGATGACCTAGTGGAGCTACTCCTCACCTACGACGTCAGCACCACCACTCCTGCAGGTAGGAACCGCCTTCGCCGCGTTGCCAAGCTGTGCGAAGGCTATGGGATGCGTGTCCAAAAGTCAGTCTTCGAGATTGTCTGCACCGAACCAGAACTCCTAACCCTCATCGATAAGGTCCAACGGATCATCGACCACGACGAAGACAGCATCCGCATCTACCGTGTACCCAAAGGTTCATTCCGCACCGTCCGCATGTTCGGCACAGCCAAACCCTTGCCACATGACGACGCCCTCATCCTGTAGCGCGGAACCCCTAGCTCACATGAAAAACCGGGGAGGTTCCGAAGAAGTTATGTGGCATAAAGGGCTCGTTTGACGGAATTGACAGCGTGGCTGAATGTGTTCGCTGGGTAGTAACTGCACTTCAAGTGCC # Right flank : CTTGACCAAGCCGCCAGAGTTGATCGATCTGACGCTGGCCGCCCCCTCGGGGCGTTCGGCGAGGTGATCTAGTCGCTTTGCTGGAGGAGCGCGATCGATTCGCTCACCGGCTGAGTGGTGAAGAGTTGAGCGTGGAGCGTCGGTCGGTGGGCAGGCTGGGGGTGGCGGTTGGGGCCGTGGGACCAGTTGCCGTGGAAGAGTGCGATCAGGTCGAGGCCGGCCCAGTACTCGATCGTTTGATGAATCACATCGGCGTCGTCGCCTGGGGTGGCGAACCATACAGTTGTCGGTGCGGCCTGGCCTGAACGTATGTCGTCTGCCTTGGCTTCGAGGTGCTCGACCACTTCTTCCAGGGCTTCGAACACATGTAGACGTTCGTTGAAGCCATGGGCGATGACCTGGCTGGACTGGCCGCAGAACATCAGGTCCAGGTCGTGGCGTGTGGTGATGACGTCGGGCAGGCGTTCGTCGCTGACGAGCGCTTCGACGAAGGCCGCGCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCCGCCCTCCGGGACGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCTCCGCGCCGGGCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.20,-14.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 129151-128177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIA010000016.1 Actinomadura namibiensis strain DSM 44197 Ga0415225_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 129150 37 100.0 36 ..................................... ACCGGGAGCTGCTGCGTGACGGCGACACCCGATGCG 129077 37 100.0 37 ..................................... GCGCACGGGCGCGGCATGCTGCATTGCCACCTGGACG 129003 37 100.0 37 ..................................... TTGGGGATCGTCGTGAACAGGTGCCGCACGATGACCT 128929 37 94.6 34 .........A..........C................ GACCGGGCGAAAGCACTCGCAGCGAGGATGCCGG 128858 37 91.9 36 .....A..............C...T............ AAGGCCATGGGCGAGGCTGGCGCCGCCGCGCTCGGC 128785 35 94.6 36 ........--........................... AACGCCAGCCAGCAGCTCAAGGAAGGCTGGACGCAG 128714 37 89.2 36 ........A...........C...T...........T ATCGACACCTCATGCCCCGGGGGATCCTGCGCGGCA 128641 37 94.6 36 .................A.............T..... TGTCTGGCTGGCTGCCGCAAGGAGGCCGTCCGCCTG 128568 37 89.2 38 ............T.......C...T..A......... GACATGTACGCCCTGCCCACACCCCCCCGGCGACTGGG 128493 37 89.2 34 .C......A...........C........G....... ATGCCGCCACAGGAAGGCAAAAGCGTCCGCGCCA 128422 37 91.9 37 ........T..........A...A............. GCCAACGCCGCAGGTGGGGGACAATTCGCGCAGGGCG 128348 37 83.8 36 .C......G....C.G....C...T............ CGCCAGCACACCAATCGTGAGGGCGAACCGCAACTC 128275 37 91.9 25 ....T.........T..A................... GGGCTGGGCGGGTTCCTCGGTGCGG Deletion [128214] 128213 37 70.3 0 A.................A.C......C.CCTA.CCT | ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 91.5 35 GTGGCGCCCGCCCTCCGGGGTGGGCGAGGATCGCAAC # Left flank : GGGAGGAACGTGGTGAAGTACACCAGCATCCAGCGGGATGCTCCGCATCGACGCCACTCCCGAGATGGTCTACGAGGTGATCAGCTCTCCCGGGCACCTGTGCAAGTGTTGGCCCGACGGTGCCGAACTCGACCCGGTCCCCGGTTCCACTGGCGTCATCACCTTCGGTGACCCGACCTCGCCGGATGCGAAGGTCGAGCGCCTCACCGTCGTGGAGGCTGACCCGCCCCGCCGGTTCGCGTTCCGCTAGGTGTATGGCGCGGGCGAGTCGGCGGCGCAGGACAATTCCCTGCTGGTCACCTTCGACCTGGTTCGGTCCGGTGACGGCACGCTGCTGCGCTTTGAGGAGACCGGCTTCCGCGAGCGTGAGTGGGAGGCCGCCGTGCTGGAGGAGGCCGACCTCGGCCACGTCCGCGGTCGGGACCACTTCCTCCCGCGCCTGGTCAGCTACGTGACCCGGCTGGCGTCGAAACCGTGAGCGTCCCCATCGACGACGTGCT # Right flank : CTGGGTAGACGAGAGACAGCCTCACGAAAAAAGCGTTGGGTAAGCCAGGGAGCTTGTGGCTAGCTCAAACTCCCTGGCTTACGCTGGTGTTGCAGATCTGGGTTGTTGCTCAGCGTACGTATTGAACAAGCGCGATCGCTGCAGCGAGAACGATGATCAATGTACACAGGCGGACGGTTCGGGGAGTGCTGTCGAGGGTGTCCCCAACCGTTCGCTGTATGGCGTGAGCCAGTTCGAGCAAGCTGATCTTTATCACCTCCTCAGGTTGTGGCCACCTTTTCTAAACGATCTCTGTCGTGAGTGTGGTGTGCCCAAGTTGGTCTAGATCGTTAGATGGAAAGTACTCAGAAGCTGGGGGTCTCGTCATGGCGGAGTACCCTGGGCGGGTGGCGAGATGTGGATCAATGTAAGTCGTTGATCCACTTTCTCGGGGATCGCAACTGAGTTCTTTTTCATCTGGCGCATGTCCGAGCAGTGGATCTTCAAGTCACTGCTCGGAC # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCCGCCCTCCGGGGTGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-12.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 157946-156519 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIA010000016.1 Actinomadura namibiensis strain DSM 44197 Ga0415225_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 157945 37 100.0 34 ..................................... CGCTCACCGGCCGCCGCGTCGGCACGGGCGGCAC 157874 37 100.0 37 ..................................... CGAACTGGCGTCAACGGGATTTGTCAGGCACCGGGAA 157800 37 100.0 37 ..................................... CCGAGGGGGAACGATGGATCGGCAGCAAGTAGAGATC 157726 37 100.0 35 ..................................... CGGCCTCGACACCGTTTCCGGTCCCGGCGGCACGG 157654 37 100.0 38 ..................................... GTGCTGGCGCTGCTGTGCAGGCGTACGGGTCTGGACCT 157579 37 100.0 38 ..................................... GGTCGGGTGAGTGGCCTGGTGGGTGGTGATCACAGCGG 157504 37 100.0 37 ..................................... GTCCAGATCGATGACGTCCCGCAACTCCGGGTGGTGC 157430 37 100.0 38 ..................................... AGCACGCAGGACACGAACGACGAGCAGTCGGTACAGCT 157355 37 100.0 35 ..................................... GTTCCCGAGCCGGAGCAGGGTCCAGCCCGGGCCGT 157283 37 100.0 36 ..................................... AGGAAAGTCACGCAGGCCATGGCCCACGCCGTAAGC 157210 37 100.0 36 ..................................... ATCGCGAAGGCCCGCTGCTTGACGGCGGCCGCAAAG 157137 37 100.0 35 ..................................... CACTGGAGGCCGCGCTCCTCCTTCTCCAAGACGTG 157065 37 100.0 37 ..................................... TACTTCACGGTGAACGTGTTCGTGCCGGCAGTGAGTC 156991 37 100.0 37 ..................................... AGTGCGTCGAGGAGGTCGGGGACGTCGCCGCGGATCA 156917 37 100.0 36 ..................................... AGTTTCGGCCTGGGGAACCTGCGGCACCTGCGCGCC 156844 37 100.0 36 ..................................... ACCATGCGGACGGTGACGGTGTTGGCCGCCGACACC 156771 37 100.0 34 ..................................... AACGTCCGCCGCTACGACTTGACGCTGCTGGACC 156700 37 100.0 35 ..................................... TCGGGATCACCGGCCGCCGTCTGCGGTGCGGCCAA 156628 37 97.3 36 .....................G............... CGTCGGCCGCAGCAGCCCGAGCTGCTGCGCAACGCA 156555 37 94.6 0 ...............T.....G............... | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 99.6 36 GTGGCGCCCGCCCTCCGGGGCAGGCGAGGATCGCAAC # Left flank : ACCGACCAACTGATCGCGCAAACGACGAAGTCCGCCCTCCGTCCCGCCTGACACGAACATGTGGCCCGCCGGACTCCACCTCCGGCGGGCTACGCATGTCCGATGCCTCGGAGGCTGCTACCGCATTAGCAGTGCCACACCCTGCGTGCTATCAGGTGTTCTGTCATCCCCCATGTTCCTGCTTCCGCAGGTCAGACGTCTAATGGGTGCATCATCATCCACCATGATCCATTGCAGTTCGTGTCCACTGTGTGCCCACCGTCATGCTGGCCAGACGTGCAGGGCCACGCTTTGAACTCTCACACAGAGTGATAATCGGCGAAGCTCTCATGGTTGGCGGTTCGTTGCTGGAGTGGGCAGCGCGCAAGTCTTCGGAACCTCAAGCTCCCATGGCTTCCCCAGGAGGTTCCCAACTACCTATGGCATCATTTGCGAAGTATCTCCGCAATCCATTTCGTATTCGAGTGATCGCTTACGGTGATTGGTGCAGGTGGGATGCT # Right flank : GGGATGTGGGTGGCGGTCAGCAGTGGCGCGATCCCGATCAAAGCGAGCCACGCTTTGCAAGCTGGACGGGCTAGCCATCCGGCTTGCAAAGGAGGTGTGAGTGACTTCTAGTGTCCCGCGCCAGGAATTCGATCAATATATGAGGTGAGGTGTTCGAGGATTTCGTCAGCGGTTTTGCTTCAGGTGAAGGGGCGGGGATTGTCGTTCCAGGCCTTGATCCAGTCGCGGATGTCGTTCTCCAGAGCGCGCAGGGTCTTGTGGACGCCGCAGTGAGCCTTTTTCAGTAGGTGTTGGCTTGCGGTGCTGGAGCACCAGGATGGCCTTGGCCAGGTGACCGGCCCGGTGCGGGCAGCAGCGCAGCTTGTGCAGGATGCGCCAGGACTTCAGTTGCGCGTTGGCGCGCTCACTCGGCCCGCGCATTTTGGCGTGCGCGCGGTTGGCCTCTTTCTGCGACTCGGGCTTGTTGCGTCCTTTGTAGGGCGCGAGGGTCTCGTCCATGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCCGCCCTCCGGGGCAGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.70,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 2813-4002 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIA010000008.1 Actinomadura namibiensis strain DSM 44197 Ga0415225_08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2813 29 72.4 33 A...C....A.A.GA..........C..A GAAATGATCCCTGTCGGTGTTGGTAGCGCCAGC 2875 29 100.0 32 ............................. GCCCTCGAACTCCTCCAGAGTCAGGGGCTTGT 2936 29 96.6 32 ........T.................... TTCATGACCGCGGTATCGGTGATCGCCGCCGC 2997 29 100.0 32 ............................. GGGAATGATGTTCCTCGTCACCGGACCGGTCT 3058 29 100.0 32 ............................. CAAACGTGACCGCCGGGACCATCCCGAACACC 3119 29 100.0 32 ............................. GAGGAGCGGGGGCGTTCGCGTGCCGGGCGTCT 3180 29 100.0 32 ............................. CTCTACGACCGGGAGCAGGTCAACATCGCCGT 3241 29 96.6 32 ........A.................... TTGACCGGCTTCTTGGCGTAGTCCTGCAGGCG 3302 29 100.0 32 ............................. CCGGGGTCGTCTTCGTCGGCCGGTCGGGCGGC 3363 29 100.0 32 ............................. CTCCCAGCGGCGCCCGGCGCGGTCGGTGAACC 3424 29 100.0 32 ............................. CTCCCAGCGGCGCCCGGCGCGGTCGGTGAACC 3485 29 100.0 32 ............................. TACGTCGCGGCGTGGGCCGACATGATCGACAA 3546 29 96.6 32 .........................C... GGCATAGCCTTCCTTCCCGGACTTGGCGTGTG 3607 29 100.0 32 ............................. GCCCCGGACCCCGAGGGCATCATGCGCCCGGT 3668 29 100.0 32 ............................. GGCGGCACCGTGGTCTTCTTCAGTGCCGAGCC 3729 29 100.0 32 ............................. TTGCGGCTGTCTTGCTTGCCCTCGGGGGAGCG 3790 29 100.0 32 ............................. TCCAGGAACTCCACGGCGGGGCCGCCGCGCTC 3851 29 100.0 32 ............................. TCCAGGAACTCCACGGCGGGGCCGCCGCGCTC 3912 29 100.0 32 ............................. GCGTCGCTGTTAGACATCGGGGGCCTCTCTCA 3973 28 86.2 0 ..............CA...-.A....... | TT [3998] ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.4 32 GTTCTCTCCGCGCAGGCGGAGGTGGTCCG # Left flank : CTGCTGGCCATGGAAACGTGACCAACGGAAACTCCTGCCCGAGGTGAATATCCCCTGGCTCGATCAGCACGGCGCCGAGCAGACCTGGACCGCCCCCTGGAACGCCGTCAAAGCCATCACCGGCGATACCACCGCCCCCGCCAGCAAATACTGGGCAACCGACCCTGGAGGCCACCAACAAGTTGGCTGCATCTATACCGCCCAAGGTCTGGAGTACGACTACGGTGGTGTCTTCTTCGGTCCTGACCTAGTACGCCGTGGCGGCACCTGGCAAGCGCACCCTCAACACAGCCACGACCCCTCGATGAGGAACCTCACCTCGCAGCAGTACCTGCCGCTGGCTCTCAACATCTACCGCGTCCTGCTCACCCGCAGCACCCGAGCCATGCGCGTCTACTCCACCGACCCCGAAACCCAACGCTTCCTCAAAGCACACCTTGCACTCGCCAAAAAGCAAGGTTCGTCGATCTAGAGCCATGAAAGACCTGCAGGTCAGCAGC # Right flank : GTAGGTGGGCAGGTGATGCGGTCGGCCAGTCCGCTTGCCCCCTTCCCTGCGCACTAGCGATGACCAGCACAAACAGCGCGAGGGCGAGTTCCCCAAACTCATCTGGGTCCCATATGGGTCAGGAAAAGGACTGCAGCCCGCAGGTCAAGTGGTTCTCGGCCGGCCGGTCAGGCCCCCGGTGCCGTCTCGGCCACCACCCGCCCCTCGCTGCCTTCTCCCGGCTCGATCTGCCACCCCGACGGCAGTTCGTGCGGTTGAGACCGGTCCGCCACCCCTAGAGACACCAAATCGAGGACACCACCGACTTCCACGGCACGAAAGATCACAACGTCGCCGACCTTCGCCTCGACAAATACGGCACCGCCGCCGAACGCCACTCCGACGAACACGGCGCGCCCGTCGAACTTCGCCTTGCTGAACCGGGCGTCGCCGTTGAACCTCACCTCGTCGAACCGGGCATCACCGCCGAACTCCGCCTCGACGAACGTGGCGTCGCCGTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCAGGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //