Array 1 127358-128973 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAOR01000015.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-193-10 193_10_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127358 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 127420 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 127481 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 127542 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 127603 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 127664 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 127725 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 127786 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 127847 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 127908 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 127969 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 128030 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 128091 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 128152 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 128213 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 128274 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 128335 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 128396 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 128458 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 128519 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 128580 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 128641 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 128702 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 128763 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 128824 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 128885 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 128946 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145256-146973 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAOR01000015.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-193-10 193_10_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 145256 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 145317 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 145378 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 145439 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 145501 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 145562 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 145623 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 145684 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 145745 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 145806 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 145867 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 145928 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 145989 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 146050 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 146111 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 146172 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 146233 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 146294 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 146355 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 146416 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 146477 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 146538 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 146599 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 146660 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 146721 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 146822 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 146883 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 146944 29 93.1 0 A...........T................ | A [146970] ========== ====== ====== ====== ============================= ======================================================================== ================== 28 29 98.9 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //