Array 1 224635-224128 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAL01000004.1 Pectobacterium odoriferum strain Q115 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 224634 28 100.0 32 ............................ TGACGGAACGGGCAGGGTTTTACTCTCTGATC 224574 28 100.0 32 ............................ GTTAACTCTCCCAGCGTCGGGTGAATTAATGT 224514 28 100.0 32 ............................ AAATACCGGATCGCCTGTGCGGCTCCTCCGAT 224454 28 100.0 32 ............................ TTCCGCGCAACAAAGTGGCTCAACTAAAGGCC 224394 28 100.0 32 ............................ TGTTCACGTGATAAGTTTTCAGTAGATGAAGT 224334 28 100.0 32 ............................ AACATCGATGATCTGCCGGACATGCCGGAGAT 224274 28 100.0 32 ............................ GAAGTGTCGAAATGGTTACGAGCGAATCTGGA 224214 28 96.4 32 ...........T................ TGGCACTGGTCCATAGGCGCTGGAGAAGATGA 224154 27 75.0 0 ...........T.C..A...-..C..GG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTAATCCCGTACCTGACGGCGTGAAATTTCGCACCGTGCGTCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGACCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAAGTGATATTTCCTTTAATAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : CTTATCGGGATGCGTCGCTGGCGCGACGCATTTCGGGGAGCTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAACGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTGCGACAACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 233212-234680 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAL01000004.1 Pectobacterium odoriferum strain Q115 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 233212 28 100.0 32 ............................ GATACGCTCGCCAATCTGGCGACGAATGGGTT 233272 28 100.0 32 ............................ TGTATCAGGATGCAACGCGTAGCGATGAGTTA 233332 28 100.0 32 ............................ GTACGCAATGGCTGCGTGATCGCTTGCTAAAT 233392 28 100.0 33 ............................ CTGTGCCTTCCAGGTCGAGGGAGCCACCGACAG 233453 28 100.0 32 ............................ ATCACTCACGCTGGCAAATCGCCTGTATCAGG 233513 28 100.0 32 ............................ ATCTGGAATCATTGGTTTCTCGATGTTGTCGA 233573 28 100.0 32 ............................ TGCAAATAGCTATCATCAGCGTCACCAAAACT 233633 28 100.0 32 ............................ CGTCGCACTTGCTGGCATGCTGGACGTCATCA 233693 28 100.0 32 ............................ ATCGTGGATGGACAGGGGCGAACCAGCCAAAT 233753 28 100.0 32 ............................ TCAAGCCCTGTCACATCAGACGATACGGAAAT 233813 28 100.0 32 ............................ AGTATCAAACGTTTGGTTTTCCCGAATACATC 233873 28 100.0 32 ............................ GTTGGCACCTTGTTAGCCCATGACTTCGTTGC 233933 28 100.0 32 ............................ TGAGTCGCGCAGGTCTGCGTTAACAGGTCGCT 233993 28 96.4 32 .................T.......... TGTGTGAGATAGAAATGCATGTCGCCTGTGTC 234053 28 100.0 32 ............................ AGTAGAGGCATTAAAGGTCATGGACGCATGGG 234113 28 100.0 32 ............................ TCGCGTGCTGACTCATGGCTGCGATCAAAATC 234173 28 100.0 32 ............................ GCACTGGTGCTGCCAGTTTTTCAAAGATGGAT 234233 28 100.0 32 ............................ TCGCGATGTTACATCCGCAGCGTAAAGTATTC 234293 28 100.0 32 ............................ GCACTGGTGCTGCCAGTTTTTCAAAGATGGAT 234353 28 100.0 32 ............................ TCGCGATGTTACATCCGCAGCGTAAAGTATTC 234413 28 100.0 32 ............................ AGCAGTTTGATACGTCGCTGGCGGATTTTGAC 234473 28 100.0 32 ............................ TCGCGATGTTACATCCGCAGCGTAAAGTATTC 234533 28 100.0 32 ............................ AGCAGTTTGATACGTCGCTGGCGGATTTTGAC 234593 28 100.0 32 ............................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 234653 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAATACAGCGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCATGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCCTTAAATAACGAATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGATGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCACAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 243003-242015 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAL01000004.1 Pectobacterium odoriferum strain Q115 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 243002 28 100.0 32 ............................ GGACGTACTCATCGCTAGCACACACATTAAGA 242942 28 100.0 32 ............................ TGTGTCAGCAGGGCCTTTCCCTTTGTTTACGC 242882 28 100.0 32 ............................ GCTTAGCGATACGATCAAGGCTTGCGCCGATG 242822 28 100.0 32 ............................ CTGCCATTCGTTCCCCTTTAGCAATTGGACGG 242762 28 100.0 32 ............................ CATTCCTGCGCCACCATTTTCTTTTGTTTCTT 242702 28 100.0 32 ............................ AAATGAACAGATTTTCTCGCGCGCGACCTTCC 242642 28 100.0 32 ............................ AATGAATTATCTAATTGATGATATTGGCGTTG 242582 28 100.0 32 ............................ ACCATAGCCTTTCGGCTGGCCTGCCATCCCAT 242522 28 100.0 32 ............................ GTGTCAGCGTCACGCAAAATTGCGAAATTATA 242462 28 100.0 32 ............................ ACCAGCATCGCGGGTTGTTGTGAAGTTCTGGA 242402 28 100.0 32 ............................ TGGCGCAATAGTCGGCTGTGTACCGGACCGTA 242342 28 100.0 32 ............................ AGCATCAATGGAGCGCATGAAATTAACTGACT 242282 28 100.0 32 ............................ GCTGGTCCGCGTCGAACTGATTCTGCAGCAGA 242222 28 100.0 32 ............................ TATCCCGTAATCACAGCAGCAGGCTTTTACGT 242162 28 100.0 32 ............................ TGCGGCGGTTATATCTTTCATGGTGCAGCAGG 242102 28 100.0 32 ............................ GGTAGGTGAGGTTGCGCGGCAAGTTGGCGTCA 242042 28 82.1 0 ...........AGC......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGTATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATCAGCTAAGTATAGATATTAATCACTCGACTATATATCCATAGCATATGCAGATACTTGGCATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTTACGCATCGCCGTAACTCATTGATTTTTAATTTCGATTATCTATGCTGATAAAAAAGGGTTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGTTAACTACCGTAAAATATGAACG # Right flank : ATAAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACACTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCGCAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //