Array 1 3253039-3251988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIOH010000001.1 Streptomyces syringium strain DSM 41480 Ga0451142_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 3253038 29 100.0 32 ............................. GCGTCGGTCAGCCCCTTGAGGACGTCCTGTGC 3252977 29 93.1 32 .............A.......G....... AGCACCGCGCCGAACACGACCACCCGCGTGAG 3252916 28 89.7 32 .............AG..-........... GAGGGCGAATCGTCCAGTGGTGCCCAGCAGGT 3252856 29 89.7 32 .............AT.........A.... GTCTCCCGGTAATCGCGCCCCTGGGCGATGAC 3252795 29 93.1 32 ...........A..T.............. TGGGTGCGTATTGAGGTGCACGACCCCAGCCG 3252734 29 89.7 32 ............TAT.............. CACGTCGGGTTGCTCGGTGCGCCAGCAGAAGC 3252673 29 93.1 32 .............AT.............. CTCGGGATGCCCCGGGCTGCGGAGCTGCGGTT 3252612 29 100.0 32 ............................. GGCACCGTGAAGGACGGCAAGGGGGCGAATCG 3252551 29 100.0 11 ............................. TGCTTGGGCGT C [3252536] Deletion [3252512] 3252510 29 89.7 33 ............TAT.............. TGACCGCGATCCGCGACCACTCTGCTGTGGGCC 3252448 29 93.1 32 ....A......A................. TGGCACAGTCCGCTGGGCTGCGCCCGAAAGCA 3252387 29 86.2 32 T.A..........AT.............. GCTTCGGGCAGCAGGGTGACCTCGTCGACGTA 3252326 29 96.6 32 .........................C... CACTCCGACCACCCAAGAGGTTCCCCATGACC T [3252311] 3252264 29 82.8 32 ........T....AT......T..T.... ACCTTCACTACCCCGGCCAATGCGACGCAAGC 3252203 28 93.1 35 .....................-...C... GAGGTGCCGGCGGCCCGGGTGGAGACCCTGAGCTG 3252140 29 89.7 32 ............TAT.............. CAATCCATCCAGACCGGTGACGCATGCTCTGA 3252079 29 86.2 32 .........C..T.T.........C.... GAGGGAGCGCGTCGCGGTTGATGGCAGTCGTA GC [3252067] 3252016 29 89.7 0 ...........A............T...G | ========== ====== ====== ====== ============================= =================================== ================== 18 29 92.0 31 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : AATCGCTGACCGCCCACGTCGGCCGGGCCACCGTCGACAACTCCGTCGCGAAGGCGATCGCGAAGATCACCCGGGCCAACCTCATCATCCTGGACGACATCGGGATGCTGCCGTCCGGCCAGGCCGCCGCCGAGGCGTTCTACCGGGTGATCGATGCCGCCTACGAACGCAGGTCCGTGATCGTGACCTCGAACCTGCATCCGTCGGGATTCGACTCGATCATGCCCAAGACGCTCGCCACGGCAGCAGTCGACCGGCTGTTGCATCACGCGCACATCGTCCTGACCGAGGGCAGCAGCCTCCGGCTCACCCAGGCAACCACGGGCAAGGGCGTCAAGCCACTGCACTGAGCCAGTCGAGGGACGAAAAGTCACACCGCACAAGGAGATGAACTGTCCGCCCACAAAGAGGTGCAATGTCCGCTCACCCGGATGACCGCGTGTCCGTGGACAACGCGGGGATGGACCCAGGTTCCGCAGCTGCTGCTCGGTGACTTCCTC # Right flank : GTGGTCCACCGAGAGCGAAGGCTGCCCGTCCACTTCAGGTGGGCAGTTGCACCCTCCGACGTTCAAACCGGACGGGCCTCGTGAGCTGCCGCGATCGCGTCGATGCGCCTGGCCAAGTCAAAGTCCGCGACAGTGAGCCGGTGGCCCGCGTCATGGGTGGTGATGCCGAAGCGGACCCGGTCCCAGCGGAGGTCGATGTCCGCATGGTGCCCGATCAGCCGCTCGACGTCCGCGACGTGCACGATCAGCGCCACGCCTCCGTGATACCGGATACCGAAGGTGCGGGTGATCTCATCCCCCGACCGCTGCCAGCCGGGAAGCTCCCTCAGGTGCTCCGTGATCTCCGTGTCCGTCAGTGGGACGATTGCCTCCGCCACGTCATCCCCTCGCTGCCACAGGCGCCAGGACCTTGTCGAGGTCGTGCCCTACGGGAGCATCGTGCCACGGGCTCATCGCGTGCCGCAGCGACGTCAACTCTCTTCGCATTCGCTCCGATCCAG # Questionable array : NO Score: 5.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3256096-3255758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIOH010000001.1 Streptomyces syringium strain DSM 41480 Ga0451142_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3256095 30 100.0 31 .............................. GTCTTGGACCAGCGGAAGGAGGCGGTGCGCT 3256034 30 96.7 31 ............................C. CCCTGTGGCCGTCCGAGGGCGAGATCGCCCT 3255973 30 93.3 31 ............................CA TCACCGGCTGCCAGTACAAGAGGGTCCTCGC 3255912 30 100.0 31 .............................. CCGATCAAGTCCCATACCTGCCTGGCCATCA 3255851 30 93.3 32 ............................CT CTCATCATGCCCCAGCACACCCCTGCCCAGAC 3255789 30 83.3 0 ..................T...G....AGC | C,A [3255764,3255768] ========== ====== ====== ====== ============================== ================================ ================== 6 30 94.4 31 CTGCTCCCCGCGCACGCGGGGATGGACCTG # Left flank : TGCAGTCCGACCGCGGCGTGGATGTGGAGGCCGGGCGGAATTACGCGGACGGGGTGATCTGGTGACGGTCATCGTCCTCACCCAGTGCCCGGTCGGGCTGCGCGGATTTCTGACCCGGTGGCTACTGGAGATCTCCCCGGGCGTCTTCATCGGAGGCCCGTCGGCGAGGGTTCGCGAGGCCCTGTGGGACGAGGTGAGGCAATACGCGGGCAATGGGCGTGCGTTGTTGGCGTACAGCACCAATTCCGAGCAGGGCTTCACATTCGAGACCCACGACCACAAGTGGCATCCGGTGGACCACGAGGGCCTGACCCTGATCCGGCGGCCCAGCGATCAGATTGCTGCCCCACCGGCTCCGAAGCAGGGGTGGAGCAAGGCGTCCAAGCGGCGGCGGTTTGGTGGGAGGTGAGGGGTGGGTGGGGTTGATGTCTGGAATGGGTGAATCGGTGGAAGTGCTTGGAATCGCTGCCTGGTGGGGATGAAGGTGCAGGTCGTGGAGT # Right flank : GCAAGATCCTTGTAGGCGGACGGGACGGCCCCCGCTGGGCGGACAGCTGATCTCCCTCTCCGTGGACCCATTCGTGTCGGTTCCGAACAGACGATCCCTCCGGGGGTTGGCTCAGTGCTGCCTGGCATTGAGACCGACCACCCGGAGGGACGTTGAAGAAGTCTGACAGGGAGATCATGGAAATCTTCGAGGCCCTGGACGCCACTGAATGTGCGCATTCCGCGGCTGCGCTGGCGGGGGTCGATCCCAAGACCGTGCGACGTTACGCACGGATGAGGGACACCGGTCGGCCAACCGGTCTCGTCCGCCGGCCGAAGATGATCGACCCGTTCATGCCGAAGATCGAGGAGTGGGTCGACCGATCGCAGGGCAGGGTGCGGGCCGACAAGCTCCACGACCGCCTGGTCCTGCTGGGGTTCACCGGTGATGAGCGCACGACCCGGCGGGCGGTGGCGAAGGCGAAGGAAGCCTGGCGGGCCGGGAACCAGCGGACCTATCGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3266934-3265562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIOH010000001.1 Streptomyces syringium strain DSM 41480 Ga0451142_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3266933 30 100.0 31 .............................. ACCGTGAGCGGGCCTACTACAACGAAGCGGC 3266872 30 93.3 32 ............................GC GCGGGGCCGTGCCCATCGTGCTGGCCACCATC 3266810 30 100.0 32 .............................. ACCGCCCCGTCTCGTACAGAGCCTCCTGCCGC 3266748 30 100.0 31 .............................. CGTGGGACTTGACGACGCCGTTCACGGAACG 3266687 30 96.7 31 .............................A AATGGACATCCTTTCCAAGGAGGTGGACATG 3266626 30 100.0 31 .............................. GTGACCGGGTGTTCGAGCGCGGTCGGGGGCA 3266565 30 96.7 31 .............................C GCGTGGACAGGCTCTTGCTGGCCCCGGGGGC 3266504 30 96.7 31 .............................C GTTTTGGCGGGAGGCGGCGGCCCGAGAAGCC 3266443 30 96.7 30 ............................A. GCAGGAGCCGGAGAGGGAGACCATGACCAT 3266383 30 100.0 30 .............................. CCCTGACCTGGGGCGCCGCCGGATGGTGGG 3266323 30 96.7 31 ............................T. CATAGACCGGAGGGGTCGGGCTCGCCGTGAA 3266262 30 96.7 31 .............................A AGGCCAAGTGCAGCGCGGCCGGGTGGCGGGC 3266201 30 96.7 31 .............................T CATCCGGCACCACGACCTGGACCCTGCCGAG 3266140 30 96.7 31 .............................T ACTTACCGGTAGCCCACGTGCATAGGGTGGA 3266079 30 100.0 31 .............................. CCTTCATCGACCTGGCCGAAGAGGTCCGCGA 3266018 30 96.7 31 ..........T................... GCGAGGCGCTCCTCGCGTGCCCAGTCCCTGT 3265957 30 96.7 31 .............................T GCGCCATCAACCGGCGCGCGGTCAGGGTGAT 3265896 30 93.3 31 .........................C...A CCGGCTCAGTTGAGGGCCACGGCCGAAGCGG 3265835 30 86.7 31 ...........A.CC..............C CGGCCGTGCCCTCGCTGCACGGGGGATTTCA 3265774 30 86.7 31 ...........A.CC..............T TCAAGGACAAGGGTGTGAAGGCCAAGTCCGC 3265713 30 90.0 31 ...........A.CC............... AACTTTCCACCCGCCGACGGGAAGCGGGCGA 3265652 30 83.3 31 ...........A.CC.............TC GAGGAGTAAGACCGCGAATCGGACCGGAGAT 3265591 30 76.7 0 ...........A.CC........A..T.AT | ========== ====== ====== ====== ============================== ================================ ================== 23 30 94.7 31 CTGCTCCCCGCGCATGCGGGGATGGACCCG # Left flank : CCCGGTCGAGCCGAGCCGACTCCCGCTCATAAGCCCGCCGCTCCCGCTCCAGCCGCCGCTGCTCCTGCACCTCCGCCCGATGCCGAGCCTCCACCTGCCGCTGCTGCTGCCGCTGCGCCTCGGCCCAGACGCCGATCAGTCCATTGGAGCGACGACTCATACGGAAACATGCCCTCCCCTCGGGGCGCGAGACGCCCCGGAACCGCGTACTGGCCCCACAACCAGCGGTAATGAGATCCGACTTTAGTCGGTTTGGGGCGGTGCGATCATCAGGTTGGGCGGGGTGGGGGTCGGGTCCGCTTCGGGGCGGCGGAAAGTTGGGGACTCCGGGTGTGGAGGTGGTCGGCGATTTCCCTGATGCGGTTGCGTGGTCGGGCGCTAGCTTTGGGTGGGGCTCAGGAGGAGAGGCCCCTGAAGGGGTGACCTTGTCTCTTATGTCTGGTTCGGTGAAACTGCTCGGAAGCGCCTGCGGCCGGCGATGAACTCGCAGGTCGCAGAGT # Right flank : CACGGTGGAACACCACGCCCAGGCGAGACCTGCTCCACAGCCCTCCGCGCGTCGTCCCATTACCACGCAAGTACCCTCACCGCGCGATCTTCCGATAATCGCCATGCGCTGCCACCTGCACGTGTTCAATGACTCCCATGACTCGCCAGGACGCCGAGAAAGCTCACCTGGGCGCCCACTTGACCCCTGTCGCCCGTACCGTCTGGGCCAAGCACGATCGTCCGACGGACGGCTGGTTGCCGTTGTGGCGGCACATGGCTGACAGTGCGGCGGTCGCCGGTCTCCTCTGGGACCACTGGGTTCCCCGGAACGTGCGGCAGCTCGTCGCCGGCGCGCTGCCCGCCGGGAACGGTGATGCGCGTGCCCTGGCAGTCTGGCTGGCGGCCGTTCACGACATCGGGAAGGCCACACCTGCCTTCGCCTGCCAAGTGGACGCCCTCGCCGACGACATGCGCGCGGCCGGGCTCGAAATGCCCCAGCGGAAGCAACTGGGCGACGAC # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //