Array 1 2742747-2744393 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP089062.1 Pseudomonas aeruginosa strain UNC_PaerCF38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2742747 28 100.0 32 ............................ AAGCGGTTCGAGGGCCAAGCCCTCATCGTGGA 2742807 28 100.0 32 ............................ TGATGGACAGCATGGGGGCCGAGTTCAGCCTC 2742867 28 100.0 32 ............................ AAGAATACCATCCATATATCACCTCATGCCGA 2742927 28 100.0 32 ............................ TTGTTGGTTCCTGTGATCTCGTTGCCCTCGTC 2742987 28 100.0 32 ............................ ATGGTCATTATGCGAAGCCATGGGTCAGAGCG 2743047 28 100.0 32 ............................ ACTCGCAACCGCTCTTCAAGCTCGGCAATCTG 2743107 28 100.0 32 ............................ GATCAAGGGCAAGCGCTTTCGCAAGCGGTTCA 2743167 28 100.0 32 ............................ TGGAGCCCGCGAAAGTGGCTCGGTTGCGTAGC 2743227 28 100.0 32 ............................ ATCGCCGCCACCGGTGTTACCGCCATCACCAC 2743287 28 100.0 32 ............................ CGGCGAAGGCCGGCAGCGAAGTCGCGGCAGTG 2743347 28 100.0 32 ............................ GCGAACTGATCGACAGCCTCGGCGTGCCGCAG 2743407 28 100.0 32 ............................ ATCACCGCCATCGCCCCCCGGCTCAGTCGGAT 2743467 28 100.0 32 ............................ TTGGTGACGTGTTCGGGTGGCCGTGATGGCTA 2743527 28 100.0 32 ............................ AGCACGTCGGCGCCGCCGCGATCGACTGGTTC 2743587 28 100.0 32 ............................ TGACCAAACACTCCAGCCAGCGCGCTCGCCAG 2743647 28 100.0 32 ............................ TCACCACCGCCGGAACGCTACATCCTGCTGGA 2743707 28 100.0 32 ............................ GCCGACTGATCCGGACGAACCTCCGTCCGATC 2743767 28 100.0 30 ............................ ATGGGAATGCTCTCCTGGCACGAAGAAACA 2743825 28 100.0 32 ............................ GCCCGCTGGGGAAGCCGCAGTTATCCGGAGTA 2743885 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 2743945 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 2744006 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 2744066 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 2744126 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 2744186 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 2744246 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 2744306 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 2744366 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4112903-4113410 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP089062.1 Pseudomonas aeruginosa strain UNC_PaerCF38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4112903 28 100.0 32 ............................ TACATCGCCGCCGCGCTGCGCCTGGTCTGCTA 4112963 28 100.0 32 ............................ ATGGTGTCGGTCCAACCCCACAGATAGCCCGT 4113023 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 4113083 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 4113143 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 4113203 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 4113263 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 4113323 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 4113383 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4123044-4121936 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP089062.1 Pseudomonas aeruginosa strain UNC_PaerCF38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4123043 28 96.4 32 .G.......................... TATCAGCTCAAGCAGGCCATGGACGAACTGGC 4122983 28 100.0 32 ............................ ATCCAGTGCGTCGTTCTGATAGGCGTGGATGA 4122923 28 100.0 32 ............................ TGAGTGGCTAGCGGAAGTCGACAGCAAAGAGT 4122863 28 100.0 32 ............................ GACAATCGAAACCGGCGCCACGGTCTGCCCGC 4122803 28 100.0 32 ............................ TGGGCGTCAAGGCCGTACTCGACTTCATTAAA 4122743 28 100.0 32 ............................ ACTGACGACCGTCACGCTGACCCGACCGGAGA 4122683 28 100.0 32 ............................ ATGTCCCGACCGTCGCAGGCCGTCAGCGCGTT 4122623 28 100.0 32 ............................ GCCCTGGGCCGCCTGGTCGAGCCGACCGATGT 4122563 28 100.0 32 ............................ TCAGCGAGGTGACTGTCCGCCTCGGCTCGAAC 4122503 28 100.0 32 ............................ AGTTCTTGCCGAAGCAAGAGGCCATGAACTCG 4122443 28 100.0 32 ............................ AAGGTGTTGCAGCCCGGACAAGGCCAAGACTC 4122383 28 100.0 32 ............................ TCGTCGACCGTCGCCTCGTAGTCGGCCTTCAC 4122323 28 100.0 32 ............................ ATGCGACAACTGGCCGGCGCTATGCTGAACCA 4122263 28 100.0 32 ............................ TCACGCTGCTGCGTGATCTCGTCGTCTTCGAA 4122203 28 100.0 32 ............................ GAGAAGATCAGAAATCGAAGCGTGCTTGTACA 4122143 28 100.0 32 ............................ ATCGCCGGCATGAACGAGGCGCATGCGAAGTT 4122083 28 100.0 32 ............................ TGGCCGTAACCCGTGGTCAGGCTGAGCGGCAC 4122023 28 100.0 32 ............................ AAGAGGAGCCTGAACATGGCCCAAATTTCTAA 4121963 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCGCTCTTGGGCCAGTTCCACCAGTTGGGCTTGCAGCTCGGTGTTTTGCACACTGGCTCGCGGCTGGTAGCGCAACACCGAGCGGGACAGCCCGATCAACTGACAGGCACGACGCTCGGAGATGCCGGTTCGCGCCTGCATCTCCTGCACCGCCTCCCGCCGTGCTGTCGGGCTTACCCTTTTCCCCGGGCGACCACTTTCAGCGACTCGATGTCGAGGTGGGCCTCGGCGAGCAACTTCTTCAATCGGCTGTTTTCCAGTTCAAGATCCTTCAACCGTTTGGCGTCCGCCACGGTCATACCGCCAAACTTGGCCCGCCAGGTGTAGAACGAGGCATCACTGAAGCCGTGTCGGCGACACAGTTCCTTCACCGGCACACCGGCCTCCGCCTGCTTGAGGAAGTCGAGAATCTGTTCTTCGGTAAAACGCTTTTTCACTGCCGTCTCCTGCTCGGAAAACGGACTCTACTAAGTTTGACGTGGTACTGAAATCGGGGGGCA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //