Array 1 683877-682857 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045696.1 Sodaliphilus pleomorphus strain Oil-RF-744-WCA-WT-10 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 683876 37 94.6 27 ...............A.............T....... TTGACCAACTCACCGACGTGCCAGCCG 683812 37 94.6 30 ...............A.............T....... TATTCCTCGCGCTGTTTTTCCGCCACCATG 683745 37 97.3 27 ...............A..................... CCGCTGCGACACCGTGCACAGCAACAA 683681 37 97.3 30 ...............A..................... CACTTGTATGCGTAAATGCGTAAACGCTTG 683614 37 100.0 28 ..................................... CGACTTGTACAAGCCGCGTATCGTGTCG 683549 37 100.0 30 ..................................... GAAAGAGCGCGGCGGCTGTCTCTCTGATGA 683482 37 100.0 28 ..................................... ATGCAATATTCGACGCCCTGTGGACTCG 683417 37 100.0 28 ..................................... GCGAACTTCCACAGGGAGTAATCAGCGA 683352 37 100.0 29 ..................................... AGAACGACTTCTTTCTGTCGCAGATAAGC 683286 37 97.3 30 T.................................... TCTGCGTCCCTCTTTTTTGCACAATTTTAT 683219 37 100.0 29 ..................................... GAGGGCTTGAGCTATGACTATGACAAAGC 683153 37 100.0 29 ..................................... TTTTCGGCAGAGGCCTTTAGCCTGTGCCG 683087 37 94.6 29 ......T........A..................... TGAAGTGGTAGGGTCTGCCATAGTTTTTG 683021 37 91.9 27 ......T........A.............T....... TGGCTGCTGAACGATAAAGATGCATAC 682957 37 94.6 27 ......T........A..................... ATTTCTATGCGCCAAGCCCGTGAGGGT 682893 37 81.1 0 ...C..T.....T..A.G.................TG | ========== ====== ====== ====== ===================================== ============================== ================== 16 37 96.5 29 GGCTACATAAAGCCTGTAATTTCTACTATGTGTAGAT # Left flank : CGTTGTTTTATGGGAAGGAAGTCTGCAAGTCAATATCCAATATTTCAATATAAATGAAAATTATTAGTTACGATATCGGTGATGATCGCTGGAGGGCTCGATTTACACGCATGCTTGTAAAGCACGGAGCCATTAGATTGCAATATTCGGTATATGAAGTTGCCAACACTAAAAGGGTGATGGATAATCTTACAGCCAAAATTGAAGCCTGGGCCAAACATTTCACTCTCGATGATAGCGTGATTATTTTTGATGTAGATGAAAACAAGATGATAAAATATGGCAATGCCATACATCGCGACAAACCTGTAGTTTTTTTATAGGTTTACAAACCTAAGTGTGTCGCGTTTTACTTTTTTCTCCTCATTTTATTGTGAATCAACTATATGAATATATGGCTGTTCAACTTGCGTTTACGGGGTGGGGGTAAATTCTTTAAAAGAAAGGTTTTCTACTATTGTGTATATCAGTGATTTTGTTTAAATTCGCCCCTTGTAAGA # Right flank : TATAGACTATATACTTGAATGGTGTTGGGGTGTAGTTGATGCAGTGCCTTGCCGTGCAGGTTGTAGGGGGTGGCGTTTTTGGGCGGGGATGTGATGATATGCCAAAAAAATGGGCGGTTTGGTCGATTTTGTTTTGTGCTTGAGGCTTTTTCGTGTAACTTTGCCACACGAAATGAGTGTAGCAATCATCAAATACAATGCTGGCAACGTGTTCTCGGTGAAATGTGCGTTGCAGCGCATAGGCGTGGAGGCCGTGATCACCGACGATGCCGCTGTGCTACGCCGCGCCGAGCGGGTGATATTTCCCGGTGTGGGCCAGGCGGCCACGGCCATGGACTACTTGCGCGCCAAGGGGCTCGACACGGTGATAAAGAGCCTCACGCAGCCGGTGCTGGGCATATGCATAGGCCTGCAGCTGCTGTGCCGCTCGAGCCAGGAGGGCGACACGCAGGGGCTGGGAATATTCGACCTCGACGTGAAGCGCTTCGACAACAGCGCCT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTACATAAAGCCTGTAATTTCTACTATGTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 1557727-1556888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045696.1 Sodaliphilus pleomorphus strain Oil-RF-744-WCA-WT-10 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1557726 37 100.0 35 ..................................... AGTTGTAGTTATTGCATACCAATGATTTTTTATAG 1557654 37 100.0 37 ..................................... CCTTTCAGGTTTGGGTGATTCACTGCATAACAGTGAT 1557580 37 100.0 35 ..................................... TACCAGTCATTGCTCTTGCTTTCAACACTTGTGAT 1557508 37 100.0 36 ..................................... TGTATTAGCTCTTTTAAGGTAACTGTATAGTCATAG 1557435 37 97.3 36 ..................T.................. ACAAACATGATTTTTTAGAGCATATTTCGTCATTTT 1557362 37 97.3 37 ..................T.................. CAATTGCAAAATTGTAGATTGTTTCTCCCTTGGCAGT 1557288 37 97.3 37 ..................T.................. TCCATGTAGTTGGCTTCACGGGTTTCACCACTTGTAG 1557214 37 100.0 37 ..................................... TGGTGCGAGTACCGTCAGCCTCCACAATGGCGAAGTT 1557140 37 100.0 35 ..................................... TGAAGAACTTTTAATGTCTCATTGAATTTCTCTGT 1557068 37 100.0 35 ..................................... AGGATCCCAGTTACAATCTCACCAGTTTCTTTACT 1556996 37 100.0 35 ..................................... AGCCATTTTAATCTTATACCAGCATTGTGAAGCCA 1556924 37 89.2 0 ................................GG.GG | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 98.4 36 GTCAGAGACCATATTCCACTACAACAAGGATTAAGAC # Left flank : AAGTCGAAGATGATATTGCAGGTGCACGACGAGTTGAACTTCGACGTCGTGCCCGGCGAGCTCGAGACGGTGCAGCGCATCGTGGTCGATGAGATGGAAAATGCCTATCATGGCGATGTGCGCCTCACGGCCAGCCACGGTGTGGCCGGCAACTGGCTCGACGCGCATTGATGCACCAGCCACGCCCTGCCGTGGCACTGCAGTGAGCAAGCCTGAGTGTGCACAATAGTGCCGCAGTTGCAGCGTTGGCAACCTGTGGAGAGATGCGTGACGATTGCGGGATACTGTTGATTGCCAGCACTATAATGTGGAACGCAGTGAGCAGTGTTTAGCAATAGTTGAGTTTTATAGGAATTTAATATTATCGCTCTTTGAAATTTTGCCACGAATGTTTAATTTTGCACTCGCTTAAAAGAGCGCTAATTTTTGTTAATTTTGAAGGTGCAACAGCTTTTTGAGTAGCGTTAAGGCTTGGAAAACAGTGCATTTCATTTTTAACG # Right flank : GCTGCGTCGTAAGCATCAATTACGACGCAGCCCCCCTTGCCGTGCCCGCCACCATGTTTAGGCGAGCCCCGCCGTGGTTCAGTACATTATATAGCGTAGAGGAAATCGTTTCTCATGGCGCAGGGGCAAAAAAAACAACGGGAGGCAGCCTTGCTGTGAGGCTGTCCTCCCGTTGTGGTAGTGATGGGTGCGGGCTGTGGCGCCGCTATTTCACCACCCGGGCCGGGTCGATGTTCTGCGGGTTGAACACGCGCTGCGGTCGCTCGGCGTTGCCGCGAGCCTTGGCTTTGTCGCCCTTGGCGGCCGGGGCATAGTAGTAGTTCCAGCCGGTGCCCCAGGTATAGCTGTTCCAGTTGGGCGAGCTCGTGTGCACCAGGTCGAAGTTGCGGTCGTTGTCGCGGTTCCAGTATATCGTGCCCGTGAAGTGGTTGTCGTTGAGGTGGTAGCGCTCGATAGAGATGGTGTAGTTGTCTTCCTCGAAGTGGATGCTGATCACCCCG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGACCATATTCCACTACAACAAGGATTAAGAC # Alternate repeat : GTCAGAGACCATATTCCATTACAACAAGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //