Array 1 388-1917 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRDX010000014.1 Pseudomonas aeruginosa strain NCTR 501 PseudoAeru501RETrim1K-060121_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 388 28 100.0 32 ............................ AGTTTCAGTAGGTTGCGAGTGGTTGGCTTGAA 448 28 100.0 32 ............................ CGAATCGCGTTCAGGGTCTTGCCAGCGCCTGG 508 28 100.0 32 ............................ AACATGCTGGCCAGCGCCCAGGGCGCCGACCT 568 28 100.0 32 ............................ AGACCATCCGCGTGCAGATCATCCTATCCGGC 628 28 100.0 32 ............................ TGGGGAGGATGGTTCCGGGCATGGGACTCCGG 688 28 100.0 32 ............................ AGATGGAAATACCTCGCTCGTCATTCCAGGTG 748 28 100.0 32 ............................ TCGTCGTTCCACCGCTCGCCGTTAAGCCAAGT 808 28 100.0 32 ............................ AATTCGGCGCTGAGCTGATTCGTCACCTGGCT 868 28 100.0 32 ............................ TGAAGAACGTGGATCGTCAGTACGACGACCAG 928 28 100.0 32 ............................ AAGGTCGTCCGTTCGGCAATTCGCGTGCTCCG 988 28 100.0 32 ............................ TATAGGAGAGATCAGCGCTCGGAGGCATCTCT 1048 28 100.0 32 ............................ ATCCAGCACGAACACCATCTGTGTAGGTTTCC 1108 28 100.0 32 ............................ AGGAAGCGCTCCAGGCTGCGCACGCTCGGCAG 1168 28 100.0 32 ............................ CGGTCAAGTCGTGGCTCTTCGAGGCGACTGAG 1228 28 100.0 32 ............................ TCTTCGTTCCGTTCCGCCTCGAGCACATCGAA 1288 28 100.0 32 ............................ CGAACCACTGGAGGTACGTGCACAGATCGGAC 1348 28 100.0 32 ............................ GTTCCGCCATCGCCGCCACCACCCGTACCGCC 1408 28 100.0 32 ............................ TCCGAGTGCCGGGTGGATGTTGTGCTACGGCC 1468 28 100.0 32 ............................ GCATCGAGCATCGTGCGGCAGTCGAAAATATC 1528 28 100.0 32 ............................ TCGCTGACCGCATCTTCCCGCTCTTCCCACGC 1588 28 100.0 32 ............................ AGCTCGCGCGACAACTGAACGAGATCGCAAAC 1648 28 100.0 33 ............................ TGTTTGCACAGGCTCGCTGTGTTCTGGTTTTTT 1709 28 100.0 32 ............................ TTTGGGTCGTTCATGTCCACGCCGCGTTTGCG 1769 28 100.0 33 ............................ GCGCATGTCCATCAAGGAACTCGCCGCCAACAT 1830 28 96.4 32 ........................A... TATCACCCAAGCCCGCGACGTCGACGCGGAAC 1890 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1171-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRDX010000089.1 Pseudomonas aeruginosa strain NCTR 501 PseudoAeru501RETrim1K-060121_contig_177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1170 28 100.0 32 ............................ CCTATCTGGCGCAGCCGCGGCGCTATTTCGAG 1110 28 100.0 32 ............................ TCGCGGGTCCGCTCCAGGCGGCCCAGTTCGGC 1050 28 100.0 32 ............................ TTGCGCGTGTCCGAGGCTTTCCGACAGGTAGA 990 28 100.0 32 ............................ TGCGAAGACTGCAAGGTTGTTGTCACTGCCAA 930 28 100.0 32 ............................ GAGTACAACGGCACGCGCTTGTCACAGTTCAT 870 28 100.0 32 ............................ AACATCAGCGAGGCAATTTCCGCTCGTAGTTC 810 28 100.0 32 ............................ ATGAAGCAGCAGATTGGCACCATCGACCTGAC 750 28 100.0 32 ............................ AACTCGCTGAAGTCGGAACCCCTGAGTTTCGA 690 28 100.0 32 ............................ TCGCGGGTCCGCTCCAGGCGGCCCAGTTCGGC 630 28 100.0 32 ............................ TTCCGAATGAAGACGGCATAAACGAAGACGGG 570 28 100.0 32 ............................ TTGCAGCGAGGTCAGTGTGCTCTGCAGGTTGA 510 28 100.0 32 ............................ GTCTCGGTGCGCGTGACCGTCTGGCTTTGCGC 450 28 100.0 32 ............................ GACCAGGTTGACCAGCATGGCCGGCATCGACA 390 28 100.0 32 ............................ ATGGTGATCTGCCGGTTCGTCATCGAGGCCAG 330 28 100.0 32 ............................ ACAAGGATCACCTCGAAACCCCGCGCGACCAG 270 28 100.0 32 ............................ TGACACGCAGCCTCAGCGCTCTTGTGCCTATC 210 28 100.0 32 ............................ ATGCATAGCGCGTCGATCCGCGGCAGCTTCAC 150 28 96.4 32 ......................G..... TGCGCGCCGAGGGCGAAGACCTCGAGCAGAGC 90 28 100.0 32 ............................ TACAACAGCCAGGCGCGGGGCGTGATTGAGCG 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : ATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 110108-110625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRDX010000010.1 Pseudomonas aeruginosa strain NCTR 501 PseudoAeru501RETrim1K-060121_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110108 29 100.0 32 ............................. TGTCTTGGTGACACGAGATTGCAGTGTCGCTA 110169 29 100.0 32 ............................. CGAACAGAATATATTCATCTTGCGGTAATGCC 110230 29 100.0 33 ............................. GCCGTCGGCGGCCGACGGAGCAAGCGCAACAGC 110292 29 100.0 32 ............................. CATTCTTCATGATGCTGCCGGCGAACGTCATT 110353 29 100.0 32 ............................. CTCTCTAAACGCCTCTCCATTGTTTCTCAGGA 110414 29 100.0 32 ............................. GCGGCAGCCTCCCTGATCGCGTAGAAAACGCC 110475 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 110536 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 110597 28 79.3 0 A..........A..C..-.....A....T | C [110601] ========== ====== ====== ====== ============================= ================================= ================== 9 29 96.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTTCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119799-120620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRDX010000010.1 Pseudomonas aeruginosa strain NCTR 501 PseudoAeru501RETrim1K-060121_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 119799 29 100.0 32 ............................. TGTCCGGGGACTCGAACAAGATCGATGCGGCG 119860 29 100.0 32 ............................. ATGCCGATGCGGCCGAGGCCAAGGCCCGGGCG 119921 29 100.0 32 ............................. TCGTGGAGTGGACGGCGCCGCGTCGGCACCAA 119982 29 100.0 32 ............................. AAATCCTTGCCACCGAAGAAACCCAGAAGGCC 120043 29 100.0 32 ............................. GGCGAGAGGGTGACGACGGCAGAGACGAGCGC 120104 29 100.0 32 ............................. GCGGTAGCGAACACCGCCGACGCTTACCAGGC 120165 29 100.0 32 ............................. GAGACCCTGCAATGAACCGTATCATCGCGACC 120226 29 100.0 32 ............................. ACCTATAAGCCGATGGACGACCATATTGTGCA 120287 29 100.0 32 ............................. TGGATCGGCCCGGGCCGTGGCTGGATCGACCC 120348 29 100.0 32 ............................. GCGCGGTACTGCACCGGCACCAGGGTAGACGC 120409 29 100.0 32 ............................. CATGTTGGGTTGGAGGGGGGAAACAACCAGGT 120470 29 100.0 32 ............................. GATGCGGAGCTGGAGCAGTACCCCGAAGGCAA 120531 29 100.0 32 ............................. AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 120592 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGTCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGACCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34031-35139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRDX010000034.1 Pseudomonas aeruginosa strain NCTR 501 PseudoAeru501RETrim1K-060121_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34031 28 100.0 32 ............................ CAGATGAAACGGTAGCGTTGCCGGTAACTCCG 34091 28 100.0 32 ............................ ATCGCGTCTCGAAGCTCCTGGCAGGCATGAGC 34151 28 100.0 32 ............................ TGAGCCTCTTTCGACGACGCAACGGGGGCGCA 34211 28 100.0 32 ............................ TTATCCCGGATGAAGGTCAGCGGACGCTCGAT 34271 28 100.0 32 ............................ GACGTACTTGACTCGGGAGTACAGGCGTTCAG 34331 28 100.0 32 ............................ GCGCACAGACAGTCGTCTGTCTTCTGGCTCAT 34391 28 100.0 32 ............................ TTGACCAGGCCCAGCGAGCTAAATCGAAGCCG 34451 28 100.0 32 ............................ AAGGCCGTGAAAGAGCCCGCTTGGGCCAAGTC 34511 28 100.0 32 ............................ TGCACAACGACGCCCTCGACCGACTCGCCGCC 34571 28 100.0 32 ............................ TGATCGACAAATCGGGCGAACAGGGTATGACC 34631 28 100.0 32 ............................ AGGCTGGGCTGGCGTGTCCAGGTTGCGAACGA 34691 28 100.0 32 ............................ ACACCCTAGGCTTCGCATAATGTGCAGACGTT 34751 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 34811 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 34871 28 100.0 33 ............................ GTCCTCGATCAGCTTCGCGGCGCGGGCGGTGTA 34932 28 100.0 32 ............................ ATCTACTGCCGCACAACAGGCCAGCGCATCGG 34992 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 35052 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 35112 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 43812-43664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRDX010000034.1 Pseudomonas aeruginosa strain NCTR 501 PseudoAeru501RETrim1K-060121_contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43811 28 100.0 32 ............................ TACAACAGCCAGGCGCGGGGCGTGATTGAGCG 43751 28 100.0 32 ............................ TGGTGAAGCTCAGGGAGGCCTATCCGGATTTC 43691 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AGAAATGCGCGCCGAGGGCGAAGACCTCGAGCAGAG # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCCGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //