Array 1 42125-45208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUTD01000037.1 Neisseria meningitidis strain 782_NMEN 789_45226_614243_20_,...,108+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 42125 33 97.0 33 T................................ CTGCTGGTTGATGGGTACAGACAATGCCCAATA 42191 33 97.0 34 T................................ AAAAACCCAACCATCTTCATGAGCCGCCGTCTGC 42258 33 97.0 33 G................................ TGGCGTAGTCCTTGCACATTGCCTTAGTGATTT 42324 33 97.0 34 C................................ TAAGTGATTTCATGTGTAATTTTTCCTAAAACTT 42391 33 97.0 34 C................................ CTGATTAACGGTGCGACAGGGGTAAAAGCCAGAA 42458 33 100.0 33 ................................. AAAGACGGCGTACCGGTACTTGATGAAAACGGC 42524 33 100.0 33 ................................. TACGGCCAACGCCGATACGAAAATTTAGAGGGG 42590 33 97.0 33 C................................ GGGAACACTTTACAGAGTAAACCTCCATCTTCT 42656 33 97.0 33 T................................ AATGATGAGTAAACGAAAAAGGAGCAGGATACG 42722 33 100.0 32 ................................. ATGATTGCACCTCCGCCATCAGTGCGGATACG 42787 33 97.0 33 C................................ AGCAAATGCCAATACCGGCAATGCTGAAACGGT 42853 33 97.0 34 T................................ TGCTTACAAAAATCTTGTTTCTGATTCTCTTGGT 42920 33 97.0 33 T................................ GTCTTCAGGAAGTCTGCTGTTAATGTGTTTTGA 42986 33 100.0 33 ................................. CGGTTAAAACCAATAGCAAAGGCCTTTCCCGAT 43052 33 100.0 34 ................................. AGGGCGTTCTTTGGGGTTAGTAAATAATCCATCA 43119 33 97.0 33 C................................ CCGTCCTCTGCGCCAACTTCAAGATATACCGAT 43185 33 97.0 34 T................................ GTGGTATGACGGGTAGTGCGGTGCAGTTTGGGCT 43252 33 97.0 34 G................................ GTAACGCCCCGTTGCTGTTTCTTGCGGTGTCTGC 43319 33 97.0 33 G................................ TATCAATCCTGTTATCAGCTCGGCCCGCAAAAC 43385 33 97.0 33 G................................ TTTCAGTTGGTTTTGCAGGCTCAACAGGCGTTT 43451 33 97.0 33 G................................ AGTCTAAATAGGAAGAAAATATGTTATATCTGT 43517 33 97.0 33 T................................ TATCAGACGGCCTTTTCCGTCAGTTACGTATTG 43583 33 97.0 34 G................................ TGCTTGGCGTTGGGCTTGTTCTGCTTTCTGAATC 43650 33 97.0 35 G................................ ATGAAATCAGCTACGCACAAATCGCCATATAAAGA 43718 33 100.0 32 ................................. AACCATGATTTGAGTTGCTCAAATCCTGCTTT 43783 33 97.0 33 G................................ AAGATATGTATCGGCATTTTCAGAATAATGATA 43849 33 100.0 33 ................................. TTCACCAGAACCATTCTCTTCACCATTAGATTC 43915 33 97.0 34 T................................ AATGTCTCGAATGTGTTGTTTTTCCCTGTCTTGT 43982 33 97.0 32 G................................ GATCACAAACTGTTTCATGCGCGTAATCAGGT 44047 33 97.0 34 T................................ ACGAAGACAGTTTGCCGAAAGTAACAGGTAAAGG 44114 33 100.0 33 ................................. ACAAAACTCAACCCCTCGCGCTCCAACTTGTCA 44180 33 100.0 32 ................................. CCCCTATGGCAGCAGCGTTTCCTGCCGCATGA 44245 33 97.0 34 G................................ GTCCACGCCCATTTTGTTGGCGGCGTATGCTGCG 44312 33 97.0 32 C................................ AGGCTCGAACACACCGCAGCAGACCCAAGTCA 44377 33 97.0 32 C................................ GGTCATTTTTTTGCTCCGTTTGGTTTGGTAGG 44442 33 97.0 33 C................................ ATTTTTTGTCCTTTTTTTAAAGTTTAGCGAACT 44508 33 100.0 33 ................................. AGCGGTTTTGACGGCTGGCTGCCTAATCCCGAC 44574 33 97.0 34 C................................ AAGCACATACAGACTTGAACGACTCCGAACAGAA 44641 33 100.0 33 ................................. TTTAATTGAAAACGCTGGAATATCTGACCTGCT 44707 33 97.0 33 T................................ CACCAAGACCACCCCGATTACAAAGCAAACAGA 44773 33 100.0 34 ................................. TCATAAACTCGGACGTATTTGGACGATTCACGGG 44840 33 100.0 34 ................................. TCTACGAACTCAAGACATTTGGTTTTGCTGAAGC 44907 33 97.0 37 C................................ CGTTTCTCAATCTGTGGCTTTTTTCTTGGCAATACAT 44977 33 97.0 35 G................................ CGTTGCCACCGTTTCGGGCTGTTTTGCCTTATAGG 45045 33 97.0 32 G................................ AGTCGAAATAGGAAGATAACATGTTATATCTG 45110 33 97.0 33 T................................ TCGACATCATCGCAATGGCTTTGGCGATTTGGG 45176 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= ===================================== ================== 47 33 97.8 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCAGAAGGACAGGCAAGGCTGCGGCGCGTGGCAAAATTGTGTTTGGACTACGGCGTGCGTGTGCAGTATTCGGTGTTCGAATGCGACATCGCACCCGACCAGTGGGTTGTTTTAAAAGACAAACTCTTGAAAACCTACAACCCCGAAACCGACAGCTTGCGTTTTTACCATTTAGGCAGCAAATGGCGGCGCAAAGTGGAGCATCATGGCGCGAAACCGGCGGTGGATGTGTTTAAGGACACGTTGATTGTGTGAATCGCCAATCTGCAGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGTGAATGCGGGTGTAACGGAAAAGGCTATGTTATACTCGCATTCACGCTTTTCTTGTGAGCTTAGCGAAATCGGGGCTGCGAAACTTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : ACAGCTTGAGAACCAACT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 14105-16979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUTD01000067.1 Neisseria meningitidis strain 782_NMEN 822_27077_594161_603_,...,662_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14105 35 91.7 30 T......-A........................... GAATTTATCTTGACTAAGGACTTCAGTGTC GA [14108] 14172 36 100.0 30 .................................... TTACGGGGTATTCATGCCCCTGCTGTTTGT 14238 36 100.0 30 .................................... TGCAGTAAAAGCAGGTTTCACGCACGGTAA 14304 36 100.0 30 .................................... TTCGGCCAAGAACAACACCTTTTTGTTTAG 14370 36 100.0 30 .................................... AATCCCTTATGCGTAACCAAATAGTCCGCC 14436 36 100.0 30 .................................... GTCTTGACTGGTTAATAAAAACCAAGCACG 14502 36 100.0 30 .................................... AACGGCTACACCATTTCCCCGACCGCCGTG 14568 36 100.0 30 .................................... TCCCAACTGTCGTTGATGCCGTTGTTGTTC 14634 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 14700 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 14766 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 14832 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 14898 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 14964 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 15030 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 15096 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 15162 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 15228 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 15294 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 15360 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 15426 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 15492 36 100.0 30 .................................... ACCACCGCCGGAGCTACCACCACCGCCGGA 15558 36 100.0 30 .................................... TTGATACCAGTTCTTAGTGAAGTATTTTAT 15624 36 100.0 30 .................................... TTGCCGACTGCTGGCGCAACTCCGTTTCCA 15690 36 100.0 30 .................................... TGAAGAGGTTGGAGCGCCTAAATATAGAGT 15756 36 100.0 30 .................................... TACTTGACCGTGGAACAGTTGTTGAGGGCG 15822 36 100.0 30 .................................... TTCAGATATTATGAAACTAGCTTTCATGCT 15888 36 100.0 30 .................................... TGATTATTCGCGGAACTTGATGAGCCGGTA 15954 36 100.0 30 .................................... GATAGGCTCAGTCGGAATAGTCAAATCAGG 16020 36 100.0 30 .................................... CTTGTGCTTATAAGTACAAACGACGGAATA 16086 36 100.0 30 .................................... CCCCAACATAACGGACGCTATCGCTAACGT 16152 36 100.0 30 .................................... CACAGGGGCCGCAGTAGGAGGAGCTACGAA 16218 36 100.0 30 .................................... ATACCTTCAGCAGAAGCAGCAGCCGAACCA 16284 36 100.0 30 .................................... GCCACTACCAGTTGGTGCAATTCTGACCGG 16350 36 100.0 30 .................................... GATATAAATTATCTGTAATGCGTCTTGCGG 16416 36 100.0 30 .................................... GGTAAGCAATAACAAACCGCTTCCTCCAGT 16482 36 100.0 30 .................................... ATCTTCATCTTTGATTGCCTTGTACGCAAA 16548 36 100.0 30 .................................... AGCAACGTTGCTATTCAAGAGGCATTAATC 16614 36 100.0 30 .................................... CATTTCTGGGGTTGTCTTCGCGCATTGATA 16680 36 100.0 30 .................................... GCCATCTTGCGCCTTGCGCGCCTACAATTA 16746 36 100.0 30 .................................... ACTCAAAACAACACCCATTATGTCGCCATG 16812 36 100.0 30 .................................... CCGTCAGGCTTCTTATTGGGCGCTTCCGGG 16878 36 100.0 30 .................................... ATGTGAACGGTCGCACCGTTCGGTAATTTC 16944 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 44 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : TACCTCAACGGGAAACCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGTCTAAAAAAATGTGTTTAAAATAATAATAGTTGGTCTGAATTTACTCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGTAGTTTCATGGTGGCATATTGCTTTTCCGTTACTTCCAAACAGCGGATTGACCCTTCTTGCGGTAGGTTTGCACATAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCAGCTTTGCGCTTTGCCGCTGTGGTAACCGGTAGGTCGAAGAAGACAATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCATTTTTGTCAGTTACGCTGGCTTGAAATGAGGAAATCATTTTGTCTATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 4585-3421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUTD01000079.1 Neisseria meningitidis strain 782_NMEN 834_4601_63704_691_,760+,341+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 4584 33 97.0 33 T................................ CAAACGCCTGTTTTTGGATCGTAGCCACGACGT 4518 33 97.0 34 T................................ AATCTGATGATTTGAAAAAAAGCGTGAAAGATAA 4451 33 100.0 37 ................................. AATCCATACAAGGAAAATAGTAGGGATGTTGTTCAAA 4381 33 100.0 32 ................................. TATTAAGTATGGATTTTCCCAGTCGCAGCAAT 4316 33 97.0 33 C................................ AAAAAGGCAGCCGATTTTATGCCGAAAAGAGCA 4250 33 100.0 33 ................................. TACATCAAGTAGTTCCGATAACGTCTCTTCTGA 4184 33 97.0 34 C................................ GAGCAAACCGAGGCAATCTGCGAAGAGACTGGCG 4117 33 100.0 33 ................................. ATCGAATTTACGGTTCTGAAAACCATCAATGCC 4051 33 97.0 33 G................................ GACATAACCGTCGTACATCAGATTTTGAGGACT 3985 33 97.0 34 T................................ AGGTAAAGAAAGAACAGCAAAGACGGAAAGAGGA 3918 33 100.0 33 ................................. ATTGTGTCGAAGTTTTTTTTCTGTTTTCAGGAA 3852 33 97.0 32 C................................ AGCAGTTTCCAAACAGGATGCTCCGTAGCAGT 3787 33 97.0 34 C................................ TTCGGATAGTGGCTTGTTACTTGTTGCATGTGCG 3720 33 100.0 33 ................................. TTCATAGTTAAGCTGAACAAAATTATTACGGAG 3654 33 100.0 33 ................................. ACAGCTTGAGAACCAACTTTCTCAAACGCCACT 3588 33 97.0 35 T................................ TTGCCGAAAAGCCCGAAAGCAAACCCATTTACAAC 3520 33 90.9 34 G.........................C.....T TCTAGTAACTACGAACTCTATGACGACCTATTCC 3453 33 78.8 0 GT..........G...T......A....C...T | ========== ====== ====== ====== ================================= ===================================== ================== 18 33 96.8 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTTTCTCAAACGCCAC # Right flank : ATCGTCCAAGCAGGCTACTCTTCTTCGGTGCGCAGGAAATTGCCTGCCAAACGGGACAGCTTCATGACTTAGGGAAACATTCGGAAGCCTTTAACCGCCGATTGTATGGTGGCCCATCAGTCGATCATGCTACCGCCGGAGCGAAAATTGCAAAAATGCTTGCTTTATAGTTAATTCCAAAGTATAAGCTGTTGTTCTCTTTCTTAGGCTAGATAACTTTAATTAATGAATTAAAAGGAAAAAATAATGGAAAATAAACAAACCAATTCGACCATCAAATCTCGTGCGGCGGTAGCATTTGTCCCAAATCAACCCTTACAAATTGTGGAAATCGACGTAGAAATGCCTCGAAAAGGCGAGGTGTTAATTCGTAACACTCACACGGGCGTGTGCCATACAGATGCATTTACGTTATCAGGAAGCGATCCTGAAGGTGTATTTCCTGTGGTGCTTGGACATGAAGGTGCGGGTGTAGTCGTTGCTGTGGGTGAAGGTGTGTC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //