Array 1 123666-123088 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKOZ010000013.1 Streptomyces flavofungini strain JCM 4753 Scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123665 29 100.0 32 ............................. TCTGGAACGCCGTAGCCGGAACGTTCGGCGCC 123604 29 100.0 32 ............................. TTCGGCAAGAACTTCAGCCAGATCGCCGGAGA 123543 29 100.0 32 ............................. GGCACCTTCACCGTCTGGGGCACCGCCCGCGA 123482 29 100.0 32 ............................. GCGATCCGCTGCCGACTTTCGCACACCGGATA 123421 29 100.0 32 ............................. GAACTAGTAGACCATCGGGACGGAGTAAAGAC 123360 29 100.0 32 ............................. GGCAGCCTGGTCACCACCGGGGACAACACCAC 123299 29 100.0 32 ............................. TGGTGGCTGAAGGACATCACTGACCCGGGCGG 123238 29 100.0 32 ............................. TGGCTGGCGGTCGGGAGAACGACGGACGGTTC 123177 29 100.0 32 ............................. GCGACCATGCCCAGCACCAGGAACGGATTGGT 123116 28 93.1 0 .....................-...C... | G [123091] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GCCGAGAGTTGGCGCTCTACAGGTCGTGGCTCGCGGTCGCCCTGGCTGACGCCAACGAACCCGAGCAGGCAGCGGCCGAGGCGCAGCGTGTCATCGCCCTGTCCTGCGATCTGTCCTCGGACCGAACCACCAAACGTGCCCGGGTAGTTCTGGCACGGCTGCAGGAGCACGCGGCGGTGCCCGAGGTCCAGCACGTGCTGTCCAACTACGGGCACTTGCTGCGGTAGTGATGCGTGGCCTTCTCTTGGACGTGCGCGAGGGGGTCTATGAGGGCATGGCCGATGAGCCCCAGGGCGCCGTAAGCAACTCCGTGGGGCACCAGGGTTGTTGTGGGCCTACGGTGGGCGTGAGGGCGCAGCGCCACACGCTTGCATGCAGGCGCCGCTGGCTAAGCCCTTGCGGGAGTTCGCGCGCTTAGTGGTTACCTGTCCGGAATGCCGGTATCTAAAGAAGTGAGGGGAAACTGGCTAGCGGCCGGGTAACGTCCCAGGTCGCGGCCT # Right flank : TGCGAGGTTGCTCTGCGTTCGATGCGGCCTCGTGAACGATCAGACAGTGACGGCCGCCCCGTGAAGGGTTGGGTGAGCCGGGACTTGGCGGGTCCAGGGTGCGGATCTTCAGTCAGTGCCACGAACGCTCGTGCAGGATGCCGGTGGCGACGTTGTGGATCCCCCAGTTCGGGATGGCCTCGCCCGGGTAGGCCCTGGGAAGCCGTTGCGGTCCTTGTGGCTGAGCCGACCTGTCGTCGCCGTGCGGCCCCGCTGGTGGCCGCCGGGCGTCAGTTGGGCACGACCCGGCCCCGGTCGAGTGTCACGGTCTCGTCTGCGGCTGTGAGGCCCGAGTGGGCGTGGGTCACCAAGAGTGTGGTGCGGCCCCGGGTCGCGTCGAGGATGTCGGTGAGTACGGCGGCTGCGGTGTGCGGGTCGAGGCCCTCGGTGGGTTCGTCCAGGACCAGGACGGGTGGGTCGGCCAGCAGGGCGCGGGCCAGGAGGAGGCGGGTGCGCTGGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 227164-227314 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKOZ010000003.1 Streptomyces flavofungini strain JCM 4753 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 227164 29 96.6 32 .....A....................... CAGCTTCGGCACGGCGGCCTGGGTCAAGAGCG 227225 29 100.0 32 ............................. GCCGAGAGGCGGCCATCCGCGCCGCGCGTGAT 227286 29 89.7 0 .....................A...A.T. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ACTCCCCGCAGCGGAGGCGGAACGCCTCGGCCTGGTCAACCGCGTCGTCCCCGACGCCGACCTCCCGAAGACCGCCCAGGCCTGGGCGGACCGCCTGGCCACGTCCCCGACCCGAGCCCTGGCCCTCACCAAGCAACTGGTCAACGCCTCCTTGGACACGGACCGCACGGCCGCGCTGGCGGCGGAGGCTGCGGCGCAGGAGATCAATATGGCTTCGGCGGACGCGAAGGAGGGGGTGGCGGCGTTTGTGGAGCGGCGGGGGGCTGTTTATCGGGGGAGGTGAGGGGGGCGCGGTGCTGTTCCGCCTTCGGACTGGCGGTGCGAACGGTAGGAATGGGGGTGCGTCAGGTGTGGGGCTTAGGGCAGTTCGTGGTGGCTGGCTGGTGTATGGGTTATGCATGCGGGGAGTGCGGGTTTGTGGTTGAAGGAGCGAATTGTCGGTCTCGCAAGAAGTGAAGAGAAACTGGCTGGCCGCCGGATAAAACCGCAGGTCGCGGCCT # Right flank : CTCCCCTACCTTGACGCCGCACCAGAACTGTCGGATGTGGATGATCAATTGCGGGTACGGCGACGGCCCCAGCACCGACCACACCCGGGAGGCGGGGATGCGGCGACACCTGGCAGGCCGGGCCGATCCGGTCAGTTCAGTGCGGCAATCGCCTTGAGGATCAGAGCCCGCGCCTCGGCCCCGTGGACCGCCATGCCCCGCAGTTGCTCGAAAGCCTTCAGATACAGGGCGATCTCCGAAGGTTGGGTGATGTTGACCTCCGCCGAGAGGAACTCCACGGACACGAGAGTGTCGTCGTACACATGGAAAGTCTCGACAGGCCATTGCATTCGCTGCCGCGTTGCCATGGGGACGATGCCCAGCGATACCTGCGGGAGCGCACCCGCAGTGAGGAGGTGGCCGAGCTGGGCGGCCATCGCGTCCTCGTCGCCCAACTGGGCGTACAGGACGGCCTCCTCGATGAGCATCACGAATCGGTGGCCCGGTTCGTGAATGACGCG # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230356-230753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKOZ010000003.1 Streptomyces flavofungini strain JCM 4753 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 230356 29 100.0 32 ............................. CTGCCACAGATCGCCGCTGACCTCGCCGTCGG 230417 29 96.6 32 ...........A................. GTCACCTCGGTCTCGGAGAGGTCACCGACGTC 230478 29 100.0 32 ............................. ACTACGAACCGGGCGCGTGTGCCACTGAGACT 230539 29 100.0 32 ............................. AGGCCGCCGTCACCGCCGAAAACCAGCGTGTT 230600 29 100.0 32 ............................. GGCTGGCAGAGATCGTCCAGGAAGTCGATGCG 230661 29 100.0 32 ............................. CTGGACGCCCTGCGTCTCGACGCACAGCTTCC 230722 29 86.2 0 ................G...C.C...G.. | GT,A [230733,230743] ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.5 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CTCCGCACTCCTGGCCGTCGCCCCCGCCCCCGGGACGCAGGAACAGTGACCACCCCGGACCACACCACGACGCACGCCGTGGCAGACGAGCTGTACCGCATCCACCTCCGCCACCTCGACGACTGCCAGACCTGCCGGATCCAAGGCGACTGCGAACAGGGCACCCGGCTGCGGCGGGCCGTACGCGCCGCACGCCTCGCAGACGGGGCGAGGCCGCGCCGAGGCACCACATAGCCTGCCCCGCCCAGCCCGACGGCCACCTTCCACACCCCTCAGGTTGGCGAGGCCTCACCAACCCACGCCCCCTGCCCGCGAGTTGCCCCACACCGCCACAACAGCTCTAGAGTTACGCCGACGTGGCGTCATCCGGCCTCCGGGCCGACAGGAAGCAGTGCCTTGCCGGGCATGCAGCGATCTGAGGGTGAATAGCCGATATGCCGGTATCTCGCAAAGTAAGGAGAAACCGCGGATCGGCGACATGAAGCCGCAGGTCACGGCCT # Right flank : CGTTCCGCCTTCGGACGGGGCGGAGCGGACGACAACAGTGGCGTGGCCTCAGCGCTGATGTGCGATGGGGGCGATGACCGCCGGCGACAATCGCCGTACTCGTAGGGGTGATTGGCGCTGGGTCTGGCCTCTTCGCGCTGCCCGCCCGCTGAATCGCCTCGCCCCCCGCCTGCCTTCGGTCGGGAGGGGCCCTTCACTCTTGGTTCGTCAGCCTCGGCGTGCCGCGCCCTCTGGCCACACAACATCGACGACAAGCCCCTCGGCGCGCGCTTGCTCGACTGTGTCGGACGTGCCGCCCCCCTTGCCGGAGGGCGGAGTACCGTCCCACACCGCGACGAGTCGGTCGCCGCGGCGCAGCAGTTCGCCGTTCGCCGACTCGTACGCCTGCCGGTTCGCAGTCTCGTGCGGCATGACGACGACTTCGGTGGCCGCTTCGACGAGACGGTCGAAGGTCTCGGCGTGCTGGGGCTTCACCTTCGCCTGCCGGTAGTCCCGTGACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 234084-234234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKOZ010000003.1 Streptomyces flavofungini strain JCM 4753 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 234084 29 100.0 32 ............................. GGTCTCCCGGCTTGACACGGGCTACGGGGTGA 234145 29 100.0 32 ............................. GGAACTGGTCGTCTCGCCGCTCATGTACTCAT 234206 29 86.2 0 .......................CTCA.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CCGCCTGCGCGCACTGCTCACGCTCGCCGAAGCGCTGAAGGCGACCGAGTCATGACGGTCGCCGACGACGTGACGGCGCACGCGGACGAGCTGTACCGGATCCACCTCCGCCACCTCGACGACTGCCAGACCTGCCGGACCCAGGACGACTGCGAACGGGGCACCCGGCTGCGCCGGGCCGTACGCGCTGCACGCCTCACGACCGACGCAAGGCCGCGACGAAGTACCACATAGCCTGCCCCGCCCAGCCCGACGGCCACCTTCCACACCCCTCGGGTTGGCGAGGCCTCACCAACCCACATCGCCCGCTGACAGGTTGCCCCACACCCCTACAGCAGCCCTACAGTTACGCCGACGTGGCGTCATCCGGCCTCCGGGCCGACTGGGAACAGTGCCTTGCCGGGCATGCGGCGATCTGAGGATGAATGGCCGATATGCCGATATCTCGCAAAGTAGGGAGAAACCGCGAAACGGCGACATGAAGCCGCAGGTCACGGCCT # Right flank : CGTTGCCCACTGGTTCTCGTACGCGGCGCGCGCCGAAGTTCCGCCCTGGCACGCTGCTGCCTCTCGTCGGGTACGACCCCCAACCGGCCACAGGCCTGTGCCTGGTACGTCTCCGAACTCAGACGAACCCCTAGGTCTGCGCGACCCCGATCGTGGGCGGGGCCGACGCGTACCTCCAATGGGTCCAGTCGTCCACGACCGCCGACTAGACGCGGGCCTCATCCAGCAGCTCGGCGACCGCTGCCAGCGCCGGTATCTGGCGGCGGACAGATCGGCGATGACCGACGCCAGACACCTCCGCCCTGCTCCGGGAGAGCGGAGCCGTTTCGTCACTCCCGCCCATTGACGTGAGCCGTACGCTGGCGAGACCGGCACCGCCAGACGAGGGGGCAGCATGGACATCCAGGACGACCTCAGCATCGGCGAGCGGATTCGGGTCCTACGCGAGTCGCGAGGTATGTCGCGCCCCGGTCTGGCGCAGCTCTGCGGACGAGGCCCCG # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 257322-257775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKOZ010000003.1 Streptomyces flavofungini strain JCM 4753 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================ ================== 257322 27 92.6 32 ...................T..A.... GTCTTGAGGCGTGGCTCGTCGGCCAGGATGTT ACA [257334] 257384 27 96.3 32 ............T.............. GTGAAGGACTTCGTAACCGGGTTGATCCCGGG AT [257395] 257445 27 92.6 32 ......................A...G ATGACGCCCTTCGAAATGCCGGGCCGGATCGG C,CT [257455,257459] 257507 27 96.3 32 ............T.............. GGCACGTTGCCGATCGCCGCGTCGAACTCGCC AT [257518] 257568 27 100.0 32 ........................... GGATGCACAAGACCTAAGGTGGTTCGCCCGTT 257627 27 100.0 32 ........................... TCGCAGACCGGCACGCCCTCCCAGGCTCCTGA GT [257640] 257688 27 100.0 32 ........................... ACCGACCCGGACCAGGTGTACGAACAGTGCCT 257747 27 88.9 0 ...........A.......C...C... | CT [257760] ========== ====== ====== ====== =========================== ================================ ================== 8 27 95.8 32 GTGGTCCCCGCGCGCGGGGGTGGTCCC # Left flank : TCGGGCAGCACAACGGCCTGCCCGACGTGGTCCACGACCTGGCCTCCAGCCGGGCCTACCTCAAGGCGTACGCCGACAAGACCGCCACCGACACCGGCCGGATCTGCGGCATCCACCTGGACGGCGAGCTCGTCGGCGCGGTCATCCTGCGCACCATGGACGTGGCCCGGGGCACCGCCGAGGCGGGCTGCTGGCTGGAGCCCGCGGCGGCCGGCAAGGGCCTGGTGACCCGGGCCGCCCGCGCCCTCATCGACTGGGCCATCGAGGAGCGCGGCATCCACCGCGTGGACTGGTGGGTCTCCTCGGCCAACGCCCCCAGCATCGCCGTCGCCCGCCGCCTTGGCATGACCCGTGACGGCGTTCTCCGGGGCAGCTATCTGTACCGGGGGAAGCGGCATGACCAGGAGATCTGGTCGGTGCTCGCGCCGGAGTGGCGGGAGGCCAAGTCGGCGGCCGCGCCAACGGGTTGAGCCCGGGGCCGGGCAGGGTCGGGGCCGCCC # Right flank : CGGCCTCAGCTCGACGGGCGCTCCGGGACCCCACCAGGCGAGACCGCCGCACCTCCCCCAGAGACCACCCCGGACTCCCCACCCCCCACAGCCCCAGCCCCGGCCCCAGGCGCAGGCCGCACCTCCGCCAGCGTGCCCACCAACGTCAGCACCACCGTCAACCCCACCCCCGCCAAGATCGCAGTCGACGGCGTCGTGACACTGAGCAGGCCCCCGGCCAGCGAACCGCTGACCGCGTACCCCGCCCCGATCGCCGCGTACATCACGGAGTACCCCGCGGCCAGCGCGCTCGGCGGCAGGACCTCGCGCAACGTCAGGTTGCGGGTGAGCATCGAACCCGCCTGGAGGAAACCGGCGCAGGCGAGGCCGACCGCCAGCCATGCGGCCGTCGGCAGGACGGCGACCACGGCCAGGCAGCCGCTGACGGCGAGCATGCACACCAGGCTCTGGGTGCGGAGCCGTCCGGGCCACTTCCGCAGGCCGTACACGAACGAGCCGAC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGCGGGGGTGGTCCC # Alternate repeat : GTGGTCCCCGCGTGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //