Array 1 732-1889 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQCT01000017.1 Neisseria meningitidis strain M40282 M40282_HC048C03_S19_cleaned_ctg_6813, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
       732	    36	  94.4	    30	........G...A.......................	GCGGAACGGGTTGACAGACTGAATTTGAGT	
       798	    36	  97.2	    30	............A.......................	AATCAGACCGACTTTACAACGAAGGTTTGA	
       864	    36	 100.0	    30	....................................	TTGGGAGGTGGAAAACCGAATCCTGCACGA	
       930	    36	 100.0	    30	....................................	AAGCAAATCATTTTCATAGTCAGCAGCTTC	
       996	    36	  97.2	    30	......................T.............	ACGTGAGTTTGTCTATGAGTTCGACGGCGT	
      1062	    36	 100.0	    30	....................................	CCGACCGTGGGAACGACGGTATAGTGGATT	
      1128	    36	 100.0	    30	....................................	AACGGCAACCCACTAAATTTTGCAAATGCG	
      1194	    36	 100.0	    30	....................................	TAACGATTGAAAATGAGTACGCATTAAGTA	
      1260	    36	 100.0	    30	....................................	GAACACTTGAGCAATTTAATACGCGAACAA	
      1326	    36	 100.0	    30	....................................	TGATTCTCGCCTATATGAAACGGAACAGTT	
      1392	    36	 100.0	    30	....................................	ACCACCGCCGCTTATATAGAAAAGCTGTAA	
      1458	    36	 100.0	    30	....................................	AAAAAAGTTGCGGGATAAGTTACAGTTTGA	
      1524	    36	 100.0	    30	....................................	TAATTGATTTTTAAGGTTAATCAGTTTTTG	
      1590	    36	 100.0	    30	....................................	TAATTGATTTTTAAGGTTAATCAGTTTTTG	
      1656	    36	 100.0	    30	....................................	CTATTTTCCTGCACCTACAACCCCCGAACG	
      1722	    36	 100.0	    30	....................................	CTTTCTGTGCGATGTATTGAAAAAGCTGAG	
      1788	    36	 100.0	    30	....................................	CGCCTGACCTAATATAACCATATGGAAAAA	
      1854	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        18	    36	  99.4	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAGCGGTTGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCTGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : NA
//