Array 1 107411-106851 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906866.1 Nocardiopsis sp. CNS-639 strain CNS639 G011DRAFT_scaffold00013.13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107410 29 100.0 32 ............................. CTCGTGGAGGACGCCGAAAACCGGCGGAACGC 107349 29 100.0 32 ............................. GCCTGGGCGTCGCGACGAAAACCCTCCGGGGT 107288 29 96.6 32 ........................G.... CTCCTCTAGACACGCTCGGTCACCTGTGAACG 107227 29 100.0 32 ............................. TGGGGGAGCGGGGCGGAGAGCGCGCGGCCCGG 107166 29 96.6 26 ............................A CACAGGGACACGGCCAGGGCCTGGGC 107104 29 93.1 7 .........................G..C CGCGGGG Deletion [107069] 107083 29 89.7 14 A........................G..C CCGCGCACGCGGGG Deletion [107041] 107062 29 96.6 32 A............................ GCGGGCGTACCCGAGGACTTGTGGGAAACCCG 107001 29 100.0 32 ............................. GGTTCGTGCCCTGACACGCGAAAACCCCCGCC 106940 29 96.6 32 ..........T.................. ACCACAAGCAGCCCAGCACTCCCGCGTTCGAC 106879 29 93.1 0 ..............T...........T.. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.6 27 GTGAGCCCCGCGCACGCGGGGATGAACCG # Left flank : GAACAGGGCTGCGGCCCTTCCGGGGTGAGCCCGGCCGGATCGTGTGGATGGGTGTTGGGCAGGCGTGGGCGTACGTGTGGCCGGACGGCACCGTCACCGGCGGCGGTGATCGTGCCTTGGGTGAGGAGTTGGGGCACGCCTATCGGTTGCTGCGGGGCACCGGGTTCCCGGGTCTGGAGAGCTTTGACCTGGAAGCCGTCACCGGTCAGAACTCCTGCCGGGTGGTGTGTGCGGCCCTGGGACAGCACTGGGATCACCCCGTATCGCCCTGACTTTCTCGTCTTGCTCATCCTGCTCGTGCTGCTCTTCAGGGCTGTTCCTCCGGGCCGGGGGCCTGCGACCGCAGCCCAGGCATGGAACGCCTGTGTGCCCGGCGCGGTAGTGGGGATGAGCGCCGCCGTGCGCTGTGTGAGGATGTACGTCGAAGCCGGGAGTGCTCAGCATGTCCAGGGCCAAGGTTGCGGCGAGATAACGGCCCGCGTTGTCGCAGGTCGTTAAGC # Right flank : GCCCTGTCCAACCAGCCCACGATCCCCAAACCTAGATGTCCGTGGCGGTATAGGAGATGGTGTTGGACGGTAGCCCGTTGGCACGCTAAGCCAGTCCGGATTTCGCAGCCGTTTCTCCAGGTCGGTTACAGCGGCGCCTCGGCCACGGTCAGGTCCAGGTCGCGGACCATGACCTCGCTGAGCTGACGCAACTGCATCTCGGTCACCTTGGCCCCGCGCAACGACGCCAGGCCCGACAGCCCGGACAGGTCGCTGCCTCGCAGGTCCGCACCGGCCATGGAAGTGTCCTGGAGGTCCACACCGAAGGCGCAGTCGTCGAAGACCGCCTTGCGTAGGTCGCACCCCTCGAAGGCGGCCTCCTTGAACGAGCAGTTCACGAACGCGACGTCACTCACGGCCCTGACCTGGGCCCAGGTGGTGTAGTCGAACTGGCAGCCCTCGAAGACCACGTCCCGCAGGGACACTCGTACCAGTGACACGCCCATCAGTCTTGACGTGCG # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.40, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGATCCCCGCGCCAGCGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8895-7237 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906870.1 Nocardiopsis sp. CNS-639 strain CNS639 G011DRAFT_scaffold00017.17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8894 30 100.0 36 .............................. TAGAGGCGCTGGAACATCTGCGGCGTCCCCGCCTGC 8828 30 100.0 34 .............................. GAACCCCGCACTGGCCCAGGTTGGCGGCCTGACC 8764 30 100.0 35 .............................. GCGGCGTTGCGCAGGGTCTGGGCGAAGCGCTGGGA 8699 30 100.0 35 .............................. CCGGCCACCCGGATCTCGTAGACCCGGCGGCCCTT 8634 30 100.0 35 .............................. CCCTCCGGGCCCCACGTGCGCGCGGTGATGTACTA 8569 30 100.0 35 .............................. CCCCGTCCAAGATCGGCGACTTCGCCGGGGAGGCC 8504 30 100.0 34 .............................. GCTGCTGACCTGCGCGGGTGGGGGTGCCCCCCTA 8440 30 100.0 35 .............................. GAGTAGGCGGGCCAGGTGGCGTTGTGGTGTCCGTA 8375 30 100.0 37 .............................. GCGCGCTGGATCACCAGGGCAAGCTGCCCCTCGACCC 8308 30 100.0 35 .............................. GCGGACTGCTGACGGCCACGGTCAACGACTCTGAA 8243 30 100.0 35 .............................. TTCACCCGGGGTGCACCGCCCTGGACGCCCGTGGC 8178 30 100.0 34 .............................. ATGTAGACCGCCGACCCGTCACGCTGGCCGGGTC 8114 30 100.0 37 .............................. GCCTTGACGCCACCAACACCGCTGCCGTCGCCGTCGC 8047 30 100.0 35 .............................. GCGGACATGGCGGCGCGCAGGGCGTTGTGCTGCTG 7982 30 100.0 35 .............................. AGCACCTGCCGCCCCACCTCCAGGAGGTGAACAAG 7917 30 100.0 37 .............................. GCGGCGGTCTGCCCGTGCGGGCACCCGTGCCTGACCG 7850 30 100.0 36 .............................. TGTAAAAAGTTTTACATGAGTGAGCCGAGAGCCGTC 7784 30 100.0 36 .............................. AGGGAGCGGAGCGCGCGGCCACGTGGACCACCGCGT 7718 30 96.7 35 .................A............ GCATCATCATCTCCCACTGGGACCAGATCAAGGCG 7653 30 96.7 37 T............................. GGGAGCACGTCGACCACCGGGCGGGAGCTGTCCAGGG 7586 30 93.3 28 ........T....................G GCGCGCTGGAGATCGCGTTCCGTCGTGA 7528 30 93.3 34 AC............................ AACTCCTCCGCGGCCTCCGCCCACTTGCCTTGGG GGGC [7521] 7460 30 96.7 35 ............T................. ACGGGGAGGAGTGCGGAGAGCCCACCGACGGCGGG 7395 30 90.0 35 ..T.....T................A.... CCGAGTCCGGGCGCCTGGTACCCGACCCGACCACA 7330 30 90.0 34 .......A..T.........A......... GTCGGGGTTCCTCCCCGGCCAGGCGCGGCGGGTC 7266 30 86.7 0 ...G....T..T...............G.. | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 97.8 35 GTCCTCATCGCCCCTGCGAGGGGTAGCAAC # Left flank : GACGACGCCCAGCGGATCGCGGCCGAGGCCAGCCGCGACGCGTTCCAGCCGGTGCTCACCCGTGCGGGCTACGGGCCGATCACCACCGAGATCGCTCCGCTGCGGGAGTTCTACTTCGCCGAGGACTACCACCAGCAGTACTTGCAGAAGAATCCTAACGGGTACTGCGGCATCGGCGGAACCGGTGCCAGCTGTCCGATCGGTGTCGTGACCTCGGATGATGCGTCCTCGGGTCACGCGGCCGAGTAGTACGACGGAGTACGTACGAGTACGCCCGCGCACGTTCGAATGATGGCTGAGTGATGGCTCAGCCATCATTCAATGATGGTTGGTGCGCTCGCGGTCTCGGTGCGGGTGGTGGGACCGCTGGAGGTGGGACGTGCGGGGAAGGACCTGTTTTCAGCGACTCGCCGGGGTCGGCTGCACTACCGGAGGTCTGCTGAAAAACGGCCCTACTTTGGCTGAGTCGCGGGCTGTTCGACCTGCGGCTTTACTGTCGG # Right flank : ATGTACCCGTCGGGATGACCGCGGTGATCGCGGTACCCGTCCTCTTTATTAACTAAAAGTCCTCATAGTTCCTTTTTGCCTACGAGAGCCACAATTTCGAACTTGTTTTCGATGAGTGGATTTCCCTTGCCTAGCAGAGTGGTTCTCTCGGTGTCCTGGAAACAGAATTTTTGGCCGTGGTCGGCCACTTTGGAGATCTCGTCGCTCTTCTGTCGTGACTGCTTCCTAATGTGATCCACCGTCACACCAAGAAGAGCGAGGAGGTGACTTATGCGTCTTCGAGTAGCGGTCCGTACGACTGCCACGTCCCTGGGCTGGGAAAACGTACTTCGCCCGGGCCGCGGTCTGATCTACGAACTGCTCGCCCAAGGAGCCCCTGAGGTCGGCGCTCGGCTGCACGAACACGGTTGGGGGGAGACAGGGATGAGCCCCTTCGGGCACAGTGCTCCCACGTTTCCCTCCGCACGGCGCAAACGCGGTCAGTACGCGACGGGCGGGGC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 97-919 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906895.1 Nocardiopsis sp. CNS-639 strain CNS639 G011DRAFT_scaffold00042.42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 97 30 96.7 31 .............................T CCCCGTCCAGGGCGTCCCCCGCCAACTCTGG 158 30 100.0 31 .............................. TCGGCCGCCTCGACCTGCCGTCGCACGAGTA 219 30 96.7 31 .............................T CGTCGAGCAGGCCGGGCGCGTCGGCCAGGGT 280 30 96.7 31 .............................G GAGTGGCTATCTCGTTCAGACCGTCGTCTAG 341 30 96.7 31 .............................T CGTCGAGCAGGCCGGGCGCGTCGGCCAGGGT 402 30 96.7 31 .............................G GAGTGGCTATCTCGTTCAGACCGTCGTCTAG 463 30 96.7 31 .............................T GAGGGATGAGCTGGTAGTCGCTGCTCACCGC 524 30 96.7 31 .........................C.... TCACCGGCCGCCATCACACCGGCCACTAGGG 585 30 100.0 31 .............................. CCGCCAGTGCGACCGGCAGTGCGGCCAGCCC 646 30 100.0 31 .............................. TCGGCGCGACCCTGATGCAGGCCGGTCGAGA 707 30 93.3 31 ..............G..............A CCGGCAGGTCCTCGGACGGGGGCAGGATCGT 768 30 96.7 31 .............................G ACTATGCACAACCCCAGTTCACAGCGCTACA 829 30 100.0 31 .............................. CGGCCCTGTAGTGGTCGACGACGTGGGTGGG 890 30 86.7 0 .......................ACG...G | ========== ====== ====== ====== ============================== =============================== ================== 14 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : AAGACGTTGGGGTGGAAGACTCCGGCTGAGGCTTTGGAAGAACAGCTAGCCTTGCTACAACAAGCCGGTGTTGCGACCACCGATTGAATCCGGTCTG # Right flank : GGCACACGAGCCACTCGGTTTACATGGACAGTTAAACCGGCTTGGCCGGATGAGGTCAGGGCGAGTTTCGGCGTTTGCCTGCGAAGGCGCCTCGAACCCTTGTTCAATGTCGGCCATGACGCACGAAGGGCGCCCTCAGCCCTGGAAAGACCGCCTCTCCGAGGCCGCCCGCACCGTGTGGGCCAAGCACGACTTCGATGCCAACGGTTGGCTGCCCCTCTACCGCCATATGGCCGACAGCGCCGCCGTCGCCACCCGGCTATGGGACTCCTGGCTCCCCGCGCAGGTCCGCGACCACATCAGCCGCATACTCCCCGACGGCGATCACGACGCCCGCGTCCTCACTGTCTGGCTCGCCGCCACCCACGACATCGGCAAGGCCACCCCCGCCTTCGCCTGCCAGGTCGAACACCTCGCGGCCGACATGCGCGCGCACGGCCTCGACATGCCCCTCCAGAAGCAGATGGCCGACCGCGGCCTCGCCCCCCACGGCCTGGCCG # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10660-10945 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906895.1 Nocardiopsis sp. CNS-639 strain CNS639 G011DRAFT_scaffold00042.42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 10660 30 93.3 44 ...........C.G................ GGCCCGGCATGTACGTCGACTCCCTGGAGGAGCGCCTGGACGTG 10734 30 86.7 31 ...........A.........G..A....A CCCTCCGCGCGTAGTCCTCGCATTGCAGTAG 10795 30 96.7 30 .............................C GGGGGAGACCGGCAAGCCACGGCACGGCCT 10855 30 100.0 31 .............................. TACCGTGGGCGGCGAACTGTGCTTGGTAGTC 10916 30 93.3 0 ............................GG | ========== ====== ====== ====== ============================== ============================================ ================== 5 30 94.0 34 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : ACCGGGGTGAGCTGCTGGAGTCGGGTTACAGCTACGCCGACGAGGTGGTCTGGTGACGGTCGTCGTGCTCACGAACTGTCCGGCCGGGCTGCGCGGGTTCCTGACCCGGTGGCTCATGGAGATCTCGGCGGGGGTGTTCATCGGCAACCCGTCGCGCCGGATCCGGGAGGCGCTGTGGGCGGAGGTGAAGGAGTACGCGGGGAACGGGAGGGCGTTGCTGGCGTACAGCGACGACTCCGAGCAGGGGTTCACTTTTCAGACCTTCGAGCACCACTGGGAGCCGGTGGACCACGAGGGGTTGACCCTGATGCACCGTCCGAAGAAGGCGGTGGAGGAGACCCGGAGGCCGCCGAAGAGCGGGTGGAGCAAGGCGTCGAAGAGGCGGCGCTTTGGTGGGAGGTGAGTTCTTTGGGGGTTTTGGGGTCGGTGGGGTGCGTGTCCGTCTCTGAAGAAGTTGGAAAAATGGCTGCTTGCCGTTGGTAAGTTCGCAGGTCGTTGAC # Right flank : GGGCGGCCCCCCAGGCCCACCGCATGCAGCGTCAGGCGCTCTCCTCGCTCAGGGTGCCGCCGAAGCTCCTGCGCCGTTCCGCGTAGGTGTTGACGGCGCGCACCAGGTGGGGGTGGTCGAAGTCGGGCCAGAGGGCGTCCTCGAAGACGAGTTCGGCGTAGGCGGTGTGCCAGGGCAGGAAGTTGCTGGTGCGCTGCTCGCCGGCGGTCCTGATCAGGAGGTCCACGTCGGGCAGGGTGGGATCGTAGAGGTACCCGGCGAGGTCGGACTCCGCCATGCGCGTCGGGTCCAGCCGCCCCGAGAGCGCCTCGGCCGCCGCGTGTTTGACCGCGTCCACCATCTCCTGGCGGCCTCCGTAGTCCAGGCAGAACGTGAACGTCACCCCGCTGTTGCCCGACGTCAGCTCCTCGGCCCACTCCAGCCGTTCGCGGAGCGCCGCCTCGACCCTGGTGCGGCGGCCGTACCAGCGCATCCGGACGCCCCGGGCGTGCAGGCGCCCG # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 314026-314177 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906858.1 Nocardiopsis sp. CNS-639 strain CNS639 G011DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 314026 30 100.0 31 .............................. ACACCTGAGAGGAAGAGCCCGATGGCGAAGA 314087 30 90.0 31 ..A........A.................G GCGGCCTGTACGAGGCGCACCGCCCGATCCT 314148 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== =============================== ================== 3 30 94.4 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GGAGGACACCGGGTGCTGCGGGTGCGCAGCCCCGCGGTCCCCAACGCGCTGGCCGCGGTGCTGCTGTGCCTGCGCGACGAGACCGGGGCGGTGCCCCACTGCTACTTCGCCTGGTCGGAGGGGAAGCCGATCCGCCAGGTGCTCCGTTTCCTCGTGTACGGGGAGGGGGAGACCGCTGCGTTCACCCGGGAGGTCCTGCGCGTGGTGGAGCCGGATACGCGGCGTCGCCCCGTGGTCCACGTCAGCTGAACGGCGGGGCCCTCCCGCGCGGCGTTGTGTGAGGATGGAACCAGGAAGGCAGGGGCCACGCGGGTGGGTGTTCCGAATTCCGCGCGTACGAAGGCGAACCGCTTCCCGGGGTGGCTGGAGTGAGTTCTCGAAGAGGCGGTTTTTGTTTTTGGTGGTTTTCGGGCGATTTCGGGGTTGGTGGTGCCTGTGTCTTTTTCTGAAGAAGTTGGAAAAATGGCTGCTTGCCGCTGGGAAGTTCGCAGGTCGTTGAC # Right flank : ACCAGGTTGCCGTCCTCAGCGACGACGGCACCCCCCAACGCCGCGCCGCGAGCTGTGCGCCGCGACGTTGAGGGGCGTGTCCTGCCTGCCGCCGTCAGCCGTCCTGGCCGCCGACGGGGACGAAGTTGGCGTACTCCTCGATGCGCCTGATCCGACCGGCGTCGTCGAAGCCGAAGTAGACCGCGGCGTGGACCTCGCCGCGCGTGCCGCTGGTGGTGGCAACGTGGATCACGTGCTGCTGGAGGACCTCGCCCGGCTGGGAGAGCTGGCGCAGGACGTCGTAGCGCATCGACTCGATGGAGGCCATCAGCCCTTCCATCCCGGCGATGTTCTCCTCGATGGACTGCTCGCCCTTGCCGTCGTTGTGCCAGACGGTGGCCGTCTCGGCGCACAGGCCCCGGGCGCTCTTCCAGTCGCGGTTCTCCAGCGCGCGGAGGTATGTGACAGCCCTGTCCTTTAGGTCCTGGCTCATACGGGTCTTCCTTCGGTGTGAATGGGTT # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 213816-214149 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906860.1 Nocardiopsis sp. CNS-639 strain CNS639 G011DRAFT_scaffold00007.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 213816 29 100.0 32 ............................. TACGCGCCCACGGCCACGGCTGCGGCCAGGAC 213877 29 100.0 32 ............................. CCCTACGACCTGACGATCATCACCGAGCTGCT 213938 29 96.6 32 .............G............... GTGCGCGGCCCGCGACGGGAGAGTCCGGGCCG 213999 29 93.1 32 .............G.....A......... ATCTGGCTACGGTGTCCGAGGGCGCCGCGGCT 214060 29 86.2 32 .C.....T.....G........A...... TGGACATGCAGGACAGGGGGACGGGAAACCCC 214121 29 93.1 0 ....G........G............... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.8 32 GTGAAGCCCACGCACGCACGGGGTGACCG # Left flank : GACAAGCCGGGAACGAACGTACGAGCCAAGGCCGGGCTGAACCGGTCCGTCTTGGACACAGCTCCCGGAGAGCTACGCCGTCAGTTGGAATACAAGACTTCCTGGTACGGGTCCCAACTCGCGCTCTGCGATCGTTGGTTCCCCTCCAGTAAGACCTGCTCGGCATGTGGGTGGCAAAACCCAAGCCTCTCTCTGTCCGAGCGGGTGTTCGTCTGTGCCGAGTGCGGGTTGCGGGTCGACCGTGATCTGAACGCGGCGCGCAATATCGCCGCCCATGCGGAAGTGCCGTCTGGCACCGGTGCCCCTGGTAGAGGGGAGTCCGTGAACGCCCGTGGAGGTCGTGTCAGTCCCCAGCTCTCTTGGGAGCGTGGGCAGCGTCCATCGAAGCGGGAAGACGCTGGTCTCAAAGGGCTAGCGCCACCTCGGCGGAGTAATCCGCCGACATCCCTAACGCGTGTCTCAAGAACATAACGCCCTCGCTGCGGCGCAGGTCAGCGGCT # Right flank : GGCCGGACCCGTGTCCCCATTGCCCCGGTCGGTGAGGTGAAGGAGATTGCCGCAGCAGGAGCATCGCTGGGAAGCACCTGAGGAGCAGGGCCTAGAAAAACCGGGTGTTCATCTGCTGACCACGATCCATCGGGGAGAATACGAGCATCCAGGAAGACTAAAAAAATACCACAGCGGGGAAGGCGCACATGCACCTTCCCCACCCAAGCCGTGATGCTAAAAATTTGTCGTTATTTTCTCCTCAGCTCCTTACTATCTGGAGCTTCGGCCTCCTTTCATCCTCTCCAAGAAGCAACCGCAAACGCGATATATTCCACCGAAGCTCATTCGCGAGACCACGATGCGTGACTCCTTGCTCTTGAGCCAAGCCGAAGGCCATACGCAAAAGGCAAGGAACCTCACCCGGGTAATTACTGATCGGCTCCGGAGCCAGAAGGTTCAACTTTTCCATCTTGGCGACAGCCTGATATGCCCTTCGCGCGGTAGCACCAGAGAAGAGA # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAGCCCACGCACGCACGGGGTGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.70,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 257464-255362 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906860.1 Nocardiopsis sp. CNS-639 strain CNS639 G011DRAFT_scaffold00007.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 257463 29 100.0 33 ............................. CGGTTGCGGGCTTCCTGGCGGAACTGGTCAAGG 257401 29 100.0 32 ............................. AGGGTGTCGCCGATCTCGTCGTCGTAGCGGTA 257340 29 100.0 32 ............................. CTGGCCAGCCAGGTCCGGGGGCGCGGACGGCG 257279 29 100.0 32 ............................. TGGTTCGTGGACAGGTGGGTGAGAGCCCCGTT 257218 29 100.0 32 ............................. CACAGAAATACGCGGCCCCGTGACGGCTTTTC 257157 29 100.0 32 ............................. TGCGATGTTCCGCAGTTCCTCGGGCCGCTCCT 257096 29 100.0 32 ............................. TCCTTCCCGCACCAGTCGCAGGTGCGCCGGAG 257035 29 100.0 32 ............................. CCGACCAGATGCTCGCTGGCGACGCCGAGCTG 256974 29 100.0 32 ............................. ACGGTGGACCCCGAGGGCCTGTGGTTCCTGGG 256913 29 100.0 32 ............................. CCGCCGGCCGAAGTTGTGGCCGCCCTCACCAC 256852 29 100.0 32 ............................. GTCGCCTCGGCCGTCGTCCCGCCCCCCTCGGC 256791 29 100.0 32 ............................. CGGCCGGGCGACTGGTGAGTGCCCACCGTGAC 256730 29 100.0 32 ............................. AACTCGCTCTACTGGGCGTCGTGCAAGGCCGG 256669 29 100.0 32 ............................. CCCCTCAACCTCGACACCATCGACGCCACCGG 256608 29 100.0 32 ............................. CCTGCATAGAGTTGCAACATGGTTGACAGGAC 256547 29 100.0 32 ............................. TGGCTGCCGACACCCGCGCGCCGATCTCGGTC 256486 29 100.0 32 ............................. CGGTACCCGGATGAGGACCTGGACCACGCCGC 256425 29 100.0 32 ............................. AGGACCGCGCCCATGCCCACCACCGAGTAGGA 256364 29 100.0 32 ............................. GAGGCCGCGGACACCCTGCCCGACTTGAACTC 256303 29 100.0 32 ............................. GGGGGCCGCCCCGCTTTTGTGGACCGTCACGT 256242 29 100.0 32 ............................. AGCGCCCGCATCTCGGTGTGGGTGGAAGCGAC 256181 29 100.0 32 ............................. TCCGTGGACCTGGTCATGGGGTACCGGCACGG 256120 29 100.0 32 ............................. ACACCAGCGACGACCACCCCCAGCCCGGCTAC 256059 29 100.0 32 ............................. TGATATGGCAGGCGAAACCCAGATCACGCTTG 255998 29 100.0 32 ............................. GCGGGATCAGGGCCAGAGCGGGGTCTGCGGGC 255937 29 100.0 32 ............................. ACCGGCGACCCCCGATACAAGGCGTGCGAGCA 255876 29 100.0 32 ............................. CGCCGAGCACCGGCCAGCCCCGCACACGTCCC 255815 29 96.6 32 G............................ GGCAGTGGGGCGGACATTCAGCTCGGCGGGGA 255754 29 93.1 30 G...........................G GAAGTCTTTTATAAGACTGGGGTAGAAGAC 255695 29 96.6 32 G............................ GCCGACGCGTTGAACATGACGGTGATCAGGCG 255634 29 100.0 32 ............................. CGATGAGCGAGAAGACCGAGAAGACCGAGGAA 255573 29 100.0 32 ............................. CCCGAGACCAACCGGTCTCAGGTCATCCGTGA 255512 29 100.0 32 ............................. GACATCCCGTACGGCAAGCTCGACAAGGTGAT 255451 29 96.6 32 ............................T TCGGTCCGCCGTCCGCACTGCCGGACGCCCCC 255390 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGGCCAGGACTCGCCACGGTTGGGAGGCGATGAGCCACCACAGGTAGCGCCAGGGGCCCCGGGCGTCCGGTGTGCCGGGGGCGGGCACACGCGGACGCGGGCCAGTCGCGGCGGCGGACGTGCGGGGGGCGGGCGCCGCCTCGGTACCGGTCACGGGGCCTCCGTTCGGATCGTCGGATCAGCGGCTCTCGTTCTTTTCCCCTTCATGAAAACAGGACCGCCGCCGCGCCGGAAGGCGCCTCCTACTTCGGTGGAAAACTCCGGGGAGTGCCGTTTTCCGTGTCCGTGAAACCTCTCCAATAACACCAGAAACACCAGTAACAAAACTCGCAAGAGGAGCAAGAGCGCCTATCCGCGATCCCGTCCAGCTGGGCGAGTGTGCCGGTCCCGTGTGTGGAACCATGGGATGGTTCGGACTCGGCTTTGTGGGTGAAATGTCTGTTTCTCGGGAAGTTGGAAATTTGGCTGCTTGCCGCTGGTAAATTCCCAGTTCAGCGAGT # Right flank : GTGAGCAGGTTTTGTAGGAACTGAGAAGGGGCCGCCAGCGGAGAACGCTAGCGGCCCCTTTACGCGTGTTACCGGGAACGGATGCTGGTGAGGAACGCTGCCCACTCGGCTGAGGGCGCCTCCAGGTGACCGAGGTGACGGTTCTGCGTGTCACGGACGGCGGCACCGGTGCCGGTGTCCGCGACCTCGACGCAGTTGCCGCCGCTGGGCTGGCTGTAGCTCGACTTACGGAAGTTCAACAGGGTGGGAACTGAGGTCATGGTCTTCTACTCGATCATCTGTCGAAGGTGGTCGATCGTCTCGCCGGGACGGAGAGCGGCCAGACGCAGGTGGTTCATCAGGTTTCTGTAGCGGGCGACCTCGTCGGGCTCCTCCAAGTAGATTCCATCGGTGTCCGTTTCCAAATAGACCACCGTGGGGTCGACCGATTCGGGAAACTCCAGGATGACGAAGGGGCCTCCGCTCCCCGCGTTGAGCTGGGACGCGCGTGTCATCTGGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 262162-262010 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906860.1 Nocardiopsis sp. CNS-639 strain CNS639 G011DRAFT_scaffold00007.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 262161 30 96.7 31 .............................G TGGGCATCCGGTTCTGCCTCCGCGTCATGGG 262100 30 100.0 31 .............................. CGACCAGGTGCTCGGAGGCGACGCCGAGCTG 262039 30 73.3 0 ..G..................CG..CTTGA | ========== ====== ====== ====== ============================== =============================== ================== 3 30 90.0 32 GTTCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : ACGAGCATCTCGAACAGGTGCGCGTCGTCGCGGGAGGGCCTGCCCCACTCCTGGTCGTGGTAGGCCACCATCAGCTCGGAGGACCCCCGTGCCCAGGCACAGCGCTGGTCGGACATGGCAGCTCCTCGGGGCCGGCGGCGGTGGTCGCCTCCATGGTGCCGCAGGTCGGTGACAGTCCGGACGTGACCTCCGGTCGGGGTGCGTTGTGCAGGTGTCTCGCTGGTCGCGGTCCTGACCAGTAGGGCGAGTGCGCCGGTCCTGTGTGTGAAACCATGGGATGGTTCGGACTTGGTTCTATGGGTGAAATGTCTGTTTCTCGGGAAGTTGGAAATTCGGCTGCTTGCCGCTGGTAAGTTTCCAGGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTCGGAAGGAGCGTTCTTGACCGACACGGACGCTCCGCGTCCGGGAACCCTCGCAAGATCCCCGGCGAGAACTCTCTCTCGTCAGGCTCACGAAAAATTAACCGCCACCTTTCAGAGCGAGAGGTACGGTTCGCGCTATGGCAACTAGGAAGTACTTGGTAACCCTTCCGGAGGAACTAGCCGAAGCCATCCGCGCCGAGGTGGGTCCCGATGGGTTCAGCCGCTACGTCACTCAGGCCGTCGAGCGTCAGCACGAGCGCGACAGGCTCCACGAGTACGTTGAATGGTGGGAGTCCGAATACGGTGCGATCACCGATGAGGAACTCGCCGAGGCCGAGGCGGAGCACCGTGAGATCGAGCGCCGACATGCCGAACTGGTCCGGAAACACGATCCTCTTCGGAAGGCTGCTGAAGGAGCCCGTCACCGTCTTCACCTCCGACAAGGACGACATGGACCAACTGTGCGGTGACCGCGTGGTGGTCTTCAAGCTGTGAGTCGG # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1419-1997 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906861.1 Nocardiopsis sp. CNS-639 strain CNS639 G011DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1419 30 96.7 31 .............................C TGCTCTCCCGCATGGCCGACCGCATCGGCTG 1480 30 96.7 31 .............................A ACCTCAGCTTCGGCGGGGACATCCCGTCCCG 1541 30 96.7 31 .............................T CGTCCCCGTCCGGCGACACCCACACGACCCT 1602 30 96.7 31 .............................T CGTGCTCGGCGCCGACCGCGGACTCGGCGGC 1663 30 100.0 31 .............................. ACCAGACCCCGTCGACGCGCACGCCCAGGCG 1724 30 100.0 31 .............................. CGAGGTTGCGTGCGCTGGCCTCGGCGTGCTC 1785 30 100.0 31 .............................. ATGGGTGGGTTCGGCTGGGAACTCAGGTTCC 1846 30 100.0 31 .............................. TGCTGCTGCTGCCCGCGTGCCCGGTGCGCGC 1907 30 96.7 31 .............................A GGGAACCGCCCCGCAGGAGCCCCGCTCCTCC 1968 30 93.3 0 .........A................T... | ========== ====== ====== ====== ============================== =============================== ================== 10 30 97.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : AGGAGTTTGGCCGGTTTGGGTCGTTGGGCTCTGCCCTCCGCTTTTTTCTGGGCGATGAACGCCCGGTAGTAGAGACGGCCGCGGTGAGCGGTACCGTTGCGGCGCAGCTCCCGGGAGACGGTGGCCGGGTCGCGATTGATCTGGCGGGCGATCTGTCTGACCCCGACGTCTTGGGCATGGAGCACCGCGATCTCTTCGCGCTCTTGAAACGATAGGTAGCGGCCCTGGAGTGGGGTGAGCAGGAAAGTTGCCATGCCGCCACGTTCGCGGAACCATCGGTTGCCGCCCACGCGCGACGCGCCGACCATGACAGCGGCGTTCTCGCTGGTCATGCCCTGGGTGATGTGGTGCCAGAACTGGCGTTCCGCCTCGCGGCGCAACGAGGGTGTCCTGAGTGATCGTGGGGGTGGTGGGCCTGGCGGTTCCCAGGTCCAGCCTTGTGGTTCACGCATCGACACCTCCAGAATCAAGGTGTTGCGACCACCAATTGAATCCACCCT # Right flank : GACGCTTCAGCCCGGACCCAGGACCTGTTGGGGTGCTCCCCGCGCACGCACCGACATACCACGGACTACTGCTGGCGGGGATTCTGGTCCCAGGGGCCACTCTGTGGTGGCTGCTGCTCGTAAGACTGCTGCGGGTACTGCTGCTGCGGGTATTGCTGGGGCGGGTAGTAGCCCTGGTTCATCTGGTGGTGCGGATGGTGGGTGTACTGCTGGGTGTGCCCCTGACCGGCGGCCTGGGCGTGGAACGCGAAGAACCACTGGGACACGGGCCGGTGCAGCAGGACCACTCCGGCGATGGCCAGGGGGAGCAGGAACAGCGCCCAGATGACGCTGTTTCCGCCGAGCAGCAGCATCGACTGCAGCACGATCTGGATGATGAGGACGACCTTGGCCATGGTCCGGGCCCAGGAACGGCCGCGGGTGACGGGGAACGCTGCCACTGCCATGAGCACGCCGATGACGGTGTGGGGCAGCGAGGCGCCGAACGCGTATCCGGGCTC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //