Array 1 3802974-3810447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFV010000001.1 Pseudoclavibacter chungangensis strain DSM 23821 Ga0415214_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3802974 29 100.0 32 ............................. TCTCTGGAGGAGCTATGACCATCAACATTCGC 3803035 29 100.0 32 ............................. CTCACGCTCCGGGCGTGGACGTCGGGGTCGGC 3803096 29 100.0 32 ............................. CGGCCGAGACCGCTATCGATCCCGGACCCGAC 3803157 29 100.0 32 ............................. CCGTACTCGTCCGACGAGAACGTCGCGGCCGA 3803218 29 96.6 32 ............................G CTCTCCTACCGACACGCCCGAGATCGAGGGGT 3803279 29 100.0 32 ............................. CCCGCCGGCACGACGCAGTGCCGGCAGATCCA 3803340 29 96.6 32 ............................G CCGGCCACTCGTGATCTCAGACGCTTCGTGCG 3803401 29 96.6 32 ............................G TCCTGATCCGTGCTCCCGGCTGTGACACCAGC 3803462 29 96.6 32 ............................G AGGCGATGCAGGAGGTCGCCGAGGGCGCTCTC 3803523 29 100.0 32 ............................. GCTCACCTCACTAGCACCAGCCGCGAGAGCAA 3803584 29 96.6 32 ............................G AACGCTCCCGCGGCCATGAGCACGACGGCGGC 3803645 29 100.0 32 ............................. CGGACGCGCTCGCCCCGCTTATGCGCATCGTG 3803706 29 100.0 32 ............................. CGGACGCGCTCGCCCCGCTTATGCGCATCGTG 3803767 29 96.6 32 ............................T CAAGACCGAGTTCCCGGCCCACTGCAGGACCG 3803828 29 100.0 32 ............................. CTGAGCATTTCGTCTTCCTCCTGTGTGCTGTC 3803889 29 96.6 32 ............................G CGGCTGGAGACGGCTCGTGACTCGGCCGCTGA 3803950 29 96.6 32 ............................G TTCATGACGCTCGAGGCCCGGAGCCGCCCGTT 3804011 29 96.6 32 ............................G TAACGGCGTGACGTACGGGATCGCGGCCGCGG 3804072 29 96.6 32 ............................G CCCGACCAGATCGCCGAGTACCGCGCGTTGCG 3804133 29 100.0 32 ............................. CCGTCGGCCCGACATACACGGGCTCAGCACCG 3804194 29 96.6 32 ............................G CAGGCCGCGGTCGCGCCCGTTAACTTCGTGAT 3804255 29 96.6 32 ............................T CTGTGCCCGGATCGAGTCGAACGTCGTCGCAG 3804316 29 100.0 32 ............................. AGCTACGGCTACATGGCGCCGTCCGTCACGCT 3804377 29 100.0 32 ............................. TACGAGTTCAAGATGCTCGAGTCGATCCTGGG 3804438 29 96.6 32 ............................G TACTACCCAATGAAGTACTACCCATTGAAGAA 3804499 29 100.0 32 ............................. CGGATATCGCGCCCGACGATGACCTGCTCGGC 3804560 29 100.0 32 ............................. CGGATATCGCGCCCGACGATGACCTGCTCGGC 3804621 29 100.0 32 ............................. GGCGACGACGACGGGATCAGGTCGACCGTGAA 3804682 29 100.0 32 ............................. GCGTCGCGCACCTCCGCGGTCTCGGGTGTCTC 3804743 29 100.0 32 ............................. CCTACCCTAGCGAGCATCGCCAACGCCATGGG 3804804 29 100.0 32 ............................. CTCACGCTCCGGGCGTGGACGTCGGGGTCGGC 3804865 29 100.0 32 ............................. GAGCCGGTGGAGTCCGCGAAGCCCGCGTCCGC 3804926 29 96.6 32 ............................G CCGATGATCACCGACGTCGGGTCGGCGTTCTC 3804987 29 100.0 32 ............................. CACCGCGAGATGCAGAAGTGGCGTCGGCTCAT 3805048 29 100.0 32 ............................. CCTGCTCGCGCAGCACCCGGAACAGCCGGTTC 3805109 29 100.0 32 ............................. ACGGTCAACAGCGCGGGCGGGTCGTACGTGAC 3805170 29 100.0 32 ............................. ATCGAGCGGGGCACAGATTGCCACCGCAATTC 3805231 29 100.0 32 ............................. CAGCACAAGAACGTGCTCGGCCTGATCCGCGA 3805292 29 96.6 32 ............................G TGGACTGACCTCGCGGGCAGTGGCCTCGCGGA 3805353 29 100.0 32 ............................. CCGCCCACCGCCGACGTCACCGGCGACAGGAA 3805414 29 96.6 32 ............................G CGGGTGCTCTCGTCGATGCCCCGGCCGGTGAC 3805475 29 100.0 32 ............................. TCCGCCGCGACGACCTCGACCCTCGGCGACGC 3805536 29 96.6 32 ............................G TACATGGACACGCTTGGGCTGACCCCGTCTAT 3805597 29 96.6 32 ............................G GTGGCGGCGTGATGCACGAGACGCAGGAGGCC 3805658 29 100.0 32 ............................. GAGGGTGCGTGGTTGTACCCGTCCGGCGTGAA 3805719 29 100.0 32 ............................. CGCCGCGCGAGGATCGTGCGGAACGACTCCCC 3805780 29 100.0 32 ............................. AAGGCCCGGCCCGGCGTGTACCCGGGCAGGAC 3805841 29 100.0 32 ............................. CGGGGTTCCATCGGAAGGCGAGGTGGTCGCAC 3805902 29 100.0 33 ............................. GCGGTGCTGGTCGAGTGGGACAAGGCCGCGGAG 3805964 29 100.0 33 ............................. GGTCGAGATCTTGGGGATGTGGAAGTGTGCGCC 3806026 29 100.0 32 ............................. GTGTCGAGGTCGTCGGTGGTGAGCGTGTCGGT 3806087 29 96.6 32 ............................G CGACATGAGCGGCGCCGACGCATTGAACTGGT 3806148 29 100.0 32 ............................. ACCGCCTCACCACCGAGACGAGCCCAGATCCC 3806209 29 96.6 32 ............................G TCGGACGTGTCGGCGAACATGGTCGTCGGCCG 3806270 29 96.6 32 ............................T CGGTTCGGCTTGATGTGGCGGCGGCCCCATCC 3806331 29 96.6 32 ............................T CCACGGGAGGTGTCATGTCCGGAGCGGGATCG 3806392 29 100.0 32 ............................. CCGTCAGCCCGTCCCCCTCGATCCCGAACCCG 3806453 29 100.0 32 ............................. CTGTTCGTCCCGGGGTCGACCCGCGACGCGAT 3806514 29 100.0 32 ............................. TCGAAGGCACCACTCGACACGACGAGCGTGTT 3806575 29 100.0 32 ............................. CAGGACCCGCGGTTCCCCCGACTTCACGTCGC 3806636 29 100.0 32 ............................. TCGGCCGGATGCTCTCGGTAGACCTGGACGGC 3806697 29 100.0 32 ............................. ACCAGCAGCTCGAACGCGCTCAGATCACTGTC 3806758 29 100.0 32 ............................. CCGACCTCATCGAACACGGCGTCGCCGTAGTC 3806819 29 100.0 32 ............................. CTGCCCACCCTCTGAAAGGTAGTGGAGCATGA 3806880 29 96.6 32 ............................G TACTACCCAATGAAGTACTACCCATAGAAGAA 3806941 29 100.0 32 ............................. GACACGCTGTAGGTGCGCCCCTCAGACCAACG 3807002 29 100.0 31 ............................. GCGGAGATCGGCGCGTACGAGAGCACGGACG 3807062 29 96.6 32 ............................G CCGATCCGCGACGGCGAGACGAAGGCGGTCGC 3807123 29 100.0 32 ............................. CCGCGCAGCGAGTCCGCGCCGATCCCGGCCGA 3807184 29 100.0 32 ............................. GGACGGTGCTCACCCCACTTCGCGAGGCAGTA 3807245 29 100.0 32 ............................. GCGTAGAACCGGTCTCGGTCTTGCGCGTGTCC 3807306 29 100.0 32 ............................. TGGAGGGCGATGGCGACGGGTTCTTGGTCGCC 3807367 29 96.6 32 ............................G GCGCGCGCCGCGACGGGACCGTCGAGCGATTT 3807428 29 100.0 32 ............................. CTCACGCTCCGGGCGTGGACGTCGGGCAGCGC 3807489 29 100.0 32 ............................. TCCGCCCGCAACCCCGACAACTCGCTCGCCAT 3807550 29 96.6 33 ............................A CGCCAGCGAGATTCCCGCCATGAGCGCCGGGGT 3807612 29 100.0 32 ............................. GCCGCCGCGGCGCCGGGGGCGTCATACTCGCC 3807673 29 96.6 32 ............................T GCGGCCCTGCTCGAGCTCGGTAGCGAACCGAT 3807734 29 96.6 33 ............................G CGGGCGGACGCGATCGTGCGAGCGATGGGCTTG 3807796 29 100.0 32 ............................. GCATACACGGCGACGCCGACGAGGCAGAACAC 3807857 29 100.0 32 ............................. ACGAGCGCCGCCCGCTCCAGCGCCCACACGGG 3807918 29 100.0 32 ............................. AAGGGCATCTACAACGAGACGCGCGAGGAGAC 3807979 29 96.6 32 ............................T CTCGCGCAGCTCGACGGGGCGACGATCAACGC 3808040 29 100.0 32 ............................. GACGGCACGGGGTGGGTGCGGGAATCGTCGGG 3808101 29 93.1 32 A...........................G GACGCGATCACGCAGGCCTGGGAACTCATCAA 3808162 29 100.0 32 ............................. ATCAGCGGCCGCTACACGATCGCCAACGTCAT 3808223 29 96.6 32 ............................T GAGTGAGCAAGCCCCGAGAATGGTGGGCTGGA 3808284 29 96.6 32 ............................T GCGATCGGGGCGCTTCGGAACGTCACGCACGC 3808345 29 96.6 32 ............................G TGCATCACCGGAGCGTCCGGGGTACCCGACAG 3808406 29 100.0 32 ............................. AGATAGACGAACACAGATCGGGGAGGTAGGAC 3808467 29 100.0 32 ............................. GCGTCGTGGTGGCCGTCGACGATGCGCGCGCA 3808528 29 100.0 32 ............................. ACGGTCAACACGGCGGGCGGGTCGTACGTGGT 3808589 29 100.0 32 ............................. AAGGTCGTGGGGCGATGGAAGGGGCGCGGATG 3808650 29 96.6 32 ............................G GGACGAGCGTCGTGTCGGGGTCGAACGGCCAA 3808711 29 96.6 32 ............................G TTCTTCGTCGCCTCGCACACCGGCCTGCCGTC 3808772 29 100.0 32 ............................. CCGACTCGCACGGTCTTCGTCTGCATCGCGTT 3808833 29 96.6 32 ............................G ACAGGACTCAAGGGCAAGGTCGACGGCGTCTA 3808894 29 100.0 32 ............................. GGCAAGAACTGCACCGGGCGACGCCGATTCTG 3808955 29 96.6 32 ............................G ACAGGACTCAAGGGCAAGGTCGACGGCGTCTA 3809016 29 100.0 32 ............................. GGCAAGAACTGCACCGGGCGACGCCGATTCTG 3809077 29 96.6 32 ............................G CCCGAGGCTCGCGCGTTCAAGCGGTGGATTAC 3809138 29 100.0 32 ............................. CACGGCTCGCCGCCGATCGTGACGGTGCGGAC 3809199 29 100.0 33 ............................. TAGTCCCGGCATCATCCCGCGCCGTCCCACGAG 3809261 29 100.0 32 ............................. ACCGCCAGGCCGACGCGGGGCGAGAGCACGCC 3809322 29 96.6 32 ............................G CACAAATGCGGCCCCTCGGCGGCGCCAGTTGC 3809383 29 100.0 32 ............................. GACACCGAGCCTGATTCAGACAGAAACGCCCC 3809444 29 100.0 32 ............................. GCGCCGTCACCGAGCCATCGCTTAGTGACGAG 3809505 29 100.0 32 ............................. ATGCTCAGCATCCCTGACGGGTCGCTCTCCAA 3809566 29 96.6 32 ............................G TACAGCATCACGGCGAAGACGATCGGCGTGAT 3809627 29 100.0 32 ............................. ATCGCCGTGTTCAACCTCCGTGCAGTCACCCC 3809688 29 96.6 32 ............................G ACCCTCTTCCTCTTCTCAGCCCCGGCAGTCGG 3809749 29 100.0 32 ............................. CAGGTCGGCGCGATCGACGTCGGCCAGCTCAC 3809810 29 96.6 32 ............................G GAGGCGACCGATGCCTGACCGTCTGTCCGATG 3809871 29 100.0 32 ............................. GGCACCTCGTCCGTGCTCTCGTACGCGCCGAT 3809932 29 96.6 32 ............................G ACGACCATGCTCGCCGCTGCACGGGCACGACC 3809993 29 100.0 32 ............................. GAGCCGGCGGCGCTGGTTGCGGCGTGCTGGGC 3810054 28 96.6 32 .................-........... ACCAGGTCCTCCGCGACCCCCTCCGAGGCGCG 3810114 29 93.1 32 .C..........................T CCGAGGTCTTTGACGATTGCGCGCGTCTCGTC 3810175 29 96.6 33 ............................G CTCGGGACGTTCCTCGTCGGCCTCATTACGGGC 3810237 29 96.6 32 ...T......................... ATCATCTAGCGCATCGAGAACGGCGCCCTGTA 3810298 29 96.6 32 ....................C........ GCGAAGTCGCGCTCGGGTGGGAGTACGGCTGG 3810359 29 82.8 27 .G..................A.C..T.T. GCTGCGCGCTCAACCCATCGCGCTCGG CGC [3810381] 3810418 29 69.0 0 ACA.C........G...C....C..A..A | A [3810422] ========== ====== ====== ====== ============================= ================================= ================== 123 29 98.2 32 GTGCTCCCCGCCCACGCGGGGATGAGCCC # Left flank : GCCGCGTGCCCCGCCGGTCTCCGCGGACAGTTGACCAGGTGGTTGATGGAGATCGCGCCGGGTGTGTTCGTCGGCCGCGTCTCACGCCGAGTGCGCGAGCTGCTGTGGGCGCGGGTGGTGGAGCTGAGTCGTGACGGGAGGGCCATCATGGTGTTCTCCGCTCGCAATGAACAGCGTCTCGACTTTCTCGTCCATCGCAGCGAGTGGGTCCCCGTGGAACGCGACGGGTTGCAGCTCATTCTTCGTCCGTCGCTGGACGGGCCGAAGCGTGCCGTGGGCAGGGGCGTGGTCGCCGGTGGGGTGGAGGGGGATGCCGCTGCGTCGTCCGCGAACTCCGTCGACGAGAATCCTCGTCGTGGTTGGAGCAGGGCGTCTCAACGGCGCATCGCGGCGCGGCGCCGAGGCGGCCGACGAGCGGAGGATTCGTGAGCCGCCTGCGGGGCCCGCGGAAAGTGATGCTGGAACCAGGATTCGGTACGATAAACACCTGATCAAGAAGT # Right flank : ACGATCCGGTAGCGGGCCGGACCGCTCGCAACCGAGCGCTCGGTATCACGCGCCGGTCCGTCACCGGTGGAGTGCGACGGGACCACCTCGCGGAGGCTACTCGGCGATCACTACCGGCTCGGACTGCAGCCGACCGGGCATCCTTCGCGAGCTCCTGGGCGCGGGAGCGGGCGATGCCGAGGGCGGCGGCGAGCCTGGCGTCGCGCTCGAAGCGGTCGAGTGCTTCCCGCGACTCCGTCCACTGGCGTGTGGCCTCGTCCGGGATCCGCACGCGCATGTGGGGGACGAGCTCGCCGTCGTCGACGTCGAGGAACGCGGCCATGCACTCGCGCGCCATCGGCTCTACGACGTCCCAGCGGCGCGCCCGGGTGGTCTGTCGAATGCCGGGATCTCGATGGTCCGCCATCGCCCCTCCCGGGAGGTGATGACGCCAAACTCGACGGGCGCATGTCCTTCACGTCCGCCACTCCTTCTTGGCCTCGTCCCGGAGCCGCCCGGAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //