Array 1 6528-7817 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGO01000073.1 Yersinia pseudotuberculosis strain 19-YE00069 NODE_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6528 28 100.0 32 ............................ TTTCTATAACTTGTGCATGCATCCATCTATCA 6588 28 100.0 32 ............................ ATAATAGATGCAGAGCTACCGACAGCGGGCCA 6648 28 100.0 33 ............................ GTGAATATCGAGCGTCAGGGTAACGCTACTCGC 6709 28 100.0 32 ............................ GAGAAGATTAGTCTCCACTCTATCAACTTGAT 6769 28 100.0 32 ............................ AACACCAAGGGATTATTACCAGACACAGGCGA 6829 28 100.0 32 ............................ ATATTAAACCACACGATTCAACTACAAAAATG 6889 28 100.0 32 ............................ ACCTCGTTCACCTGAGCGTTTGACTTCAATAT 6949 28 100.0 32 ............................ ATATCAATTTCAAAGTGTTGAATATAGAGAAA 7009 28 100.0 32 ............................ TAAAACGTTTCTAGAAGCCCAAGAAGCGCCAG 7069 28 100.0 34 ............................ GTTGGCCTGCTGTAGGTTCGTCTGCGTCTGTTAT 7131 28 100.0 32 ............................ TATTACATATAATTTCTCTATACTCTTTATAC 7191 28 100.0 32 ............................ TGAGACAATCATCCTATTTTCCCTATCCAGAA 7251 28 100.0 32 ............................ ATACTACATTTATTTCCATATTAAACCACACG 7311 28 100.0 31 ............................ CCCATTAATAGAGGTATAAAAGGAATCATAT 7370 28 100.0 32 ............................ AACAACTCTAACACGTAGATAGTCTAAAGTTT 7430 28 100.0 32 ............................ ATATCAGACGGCGCTAAAACTTGAGTTTTAAA 7490 28 100.0 32 ............................ ACATACTGCTTAACTTGGTTCCATAGACCGTT 7550 28 100.0 32 ............................ CTTGATTAAAAGCTTCTTCTTCTTTAATAGCA 7610 28 100.0 32 ............................ CTACTCCGAAACTACGGAGTGTGATTACATTT 7670 28 100.0 32 ............................ TGAGACAATCATCCTATTTTCCCTATCCAGAA 7730 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 7790 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 22 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACCCCACCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : GATTTAGAAGCTACCGTGTTAGCTAATCACGCGTTCACTGCCGCACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-1590 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGO01000078.1 Yersinia pseudotuberculosis strain 19-YE00069 NODE_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ GATTTAGAAGCTACCGTGTTAGCTAATCACGC 61 28 100.0 32 ............................ ATGCCAGTTATTATAGTCTACCCTGTTACATT 121 28 100.0 32 ............................ CAGCAAATTCAATCGAACGATGGAGTGCGGCA 181 28 100.0 32 ............................ ACTGTGAAAGATGTTCTAATATAGATTGCGAT 241 28 100.0 33 ............................ AAGTACCACCAATAGACTCCCAATACTCACCTA 302 28 100.0 32 ............................ TCTTTAAATGTGAAACCACGAACAAATAAAGT 362 28 100.0 32 ............................ TTAAGTACCTAGGCATTAAAGTAATTAATTCA 422 28 100.0 32 ............................ TCGGAATACAGATTATTGCTGGTACTGTCAAC 482 28 100.0 32 ............................ GTGTAGACGCTTATGCTCAGGTTCTATTAACA 542 28 100.0 32 ............................ ATATCTCATGCCAACACGTTGGATGAATCACA 602 28 100.0 32 ............................ ATATAGCGAGTTTAAAAAGAGTTTACCTAACG 662 28 100.0 32 ............................ ATAAGATAAATTATTGCTATATCTATCTGAGC 722 28 100.0 32 ............................ CCAAGCAATATTAATAATATACATAACTCCGG 782 28 100.0 32 ............................ GATTTAGAAGCTACCGTGTTAGCTAATCACGC 842 28 100.0 32 ............................ AACAACAAATAAATGTTTATCTATATGATAAT 902 28 100.0 32 ............................ CTTATTCCCCCATTTACCCAAATCTGAATCGT 962 28 100.0 32 ............................ GCATTCAAACGAGTATCGTGGCGGCAACACAA 1022 28 100.0 32 ............................ CATCTTTGAAAGATTCATTGAGTGATACAAAA 1082 28 100.0 32 ............................ TCAATGGTAAGTCCGAAGATAGCATGGGAAGA 1142 28 100.0 33 ............................ CCTGCCCACCCATCACTCCGGCGCTACAGGCCA 1203 28 100.0 32 ............................ TGCAATTCCGGATCATATTGCTGCGTTGATAT 1263 28 100.0 32 ............................ TAATGCCTTAAACGGATTGCCGGATAAAAAGG 1323 28 100.0 32 ............................ AACATTATCGATGGCAAGTTTTCTCGCTCATC 1383 28 100.0 32 ............................ ACTATTCACAGCCGCCAAGCCAGCGGAGGATT 1443 28 100.0 32 ............................ AAAGAATACACCCGGAACGCCATCTGGTGATT 1503 28 100.0 32 ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC 1563 27 89.3 0 .....................CC.-... | T [1589] ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : | # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19363-21972 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGO01000004.1 Yersinia pseudotuberculosis strain 19-YE00069 NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19363 28 100.0 32 ............................ ATTTCCAGACATTGGGATAAAATAACATTTCT 19423 28 100.0 32 ............................ ATCATATGACTTAAACTTAGCCATAGCTGCAT 19483 28 100.0 32 ............................ AATGGGATCACCTTGCTATATTGCCGCCAAGC 19543 28 100.0 32 ............................ AATTGAACGCGCTAATGCTTATCTTAGACTGA 19603 28 100.0 32 ............................ ATATCAGACGGCGCTAAAACTTGAGTTTTAAA 19663 28 100.0 32 ............................ CATATCGCGCATGTGTTTACGCAATTTATCAG 19723 28 100.0 32 ............................ ACTCGTCATCAAAACTGCAAACAGTACGATTA 19783 28 100.0 32 ............................ AAATAGACAACTACGCAGCAGTGCTAGACCGC 19843 28 100.0 32 ............................ AAGTCCGCCATTGCTAAAGGCTGAACCAATAA 19903 28 100.0 32 ............................ TTATCAGGGTGAGGATAGACACGACCCCAAAA 19963 28 100.0 32 ............................ ACTTTAAAGTCGAGAATGTTTTCCCTGCTCCT 20023 28 100.0 32 ............................ ACTGAATTACGTCAATTCTAACAACAAGAAAT 20083 28 100.0 32 ............................ TATTTAACCTTAACCTACGCGAAGTTTAGTTT 20143 28 100.0 32 ............................ ATTGTGTTGAATAGAAAAATGGTTTCCATCTC 20203 28 100.0 32 ............................ AAGTACCACCAATAGACTCCCAATACTCACCT 20263 28 100.0 32 ............................ AAAGCAGCGCAAGTTAATAGCGATGAAGTTAA 20323 28 100.0 32 ............................ AACAACAAATAAATGTTTATCTATATGATAAT 20383 28 100.0 32 ............................ ATAAGTATAACACTATAATTAATAATTGATGT 20443 28 100.0 32 ............................ GTCATGATAAACTTGGATATTTCTATAAATAT 20503 28 100.0 32 ............................ TTTACCATATGAAAAACGTTTTACAAGTGAAA 20563 28 100.0 32 ............................ CAAGTTTTAATAGAGTGGAGGAATACATTCAT 20623 28 100.0 32 ............................ GTGTAGACGCTTATGCTCAGGTTTTACTAACA 20683 28 100.0 33 ............................ CCATGTCAGTAATACCTTTTAAGTTATCAATAC 20744 28 100.0 33 ............................ CTTATTTTAACACGTCACATAATGCACAGGATT 20805 28 100.0 32 ............................ TTATAGTTAATTTAAATTGAGTTTTATTATAT 20865 28 100.0 32 ............................ TGTCCAAATTTAGGAATATAGAGAATGTTTTT 20925 28 100.0 32 ............................ ATTTAAAACGTGAGCAATAGATATGCATAACC 20985 28 100.0 32 ............................ AATGCGTCTATTCTTGAATATCTAAATACATC 21045 28 100.0 32 ............................ TAACGCTTTAATAACACTATCATCGTTAGATT 21105 28 100.0 32 ............................ TAATATATCAATTTCAGAGTGTCGAGTACAGA 21165 28 100.0 32 ............................ AGTTGCAGCGAATACTTGACCAGATGTTGCTA 21225 28 100.0 32 ............................ CCGCCGCACACCCCGCACATCGGCGATCCGTT 21285 28 100.0 32 ............................ AATAGCCTGAAAGCGCTTTGCTATAGCACCCA 21345 28 100.0 32 ............................ AGCTGCTCAACTTGGTTGATTTCGCAGCGCAG 21405 28 100.0 32 ............................ AAGCAATATATGCGTCCGGACATCAAAGCATG 21465 28 100.0 32 ............................ CAGATGGCATGAAATTAAAGGCTCATGATACA 21525 28 100.0 32 ............................ TTTAGATGCCCGATCTAATTCCTCTTGGGCTT 21585 28 100.0 32 ............................ AGTACCACCAATAGACTCCCAATATTCACCTA 21645 28 100.0 32 ............................ ACCCAACCTCAAAGCTGGATGACAAGCGCAAA 21705 28 100.0 32 ............................ TCGCGAACGCGCTCAGGTTCACGGAATGGCGA 21765 28 100.0 32 ............................ ATCTGCGCCAAAGAAAATGCCATTCAGATAAT 21825 28 96.4 32 .........T.................. AACTACTAGAAGCTTGCCCATCTTACCTTTTC 21885 28 100.0 32 ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 21945 27 85.7 0 ...................-A.A.C... | T [21969] ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATGGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCGAGGGGGGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATCCTGGGCCATGTGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTGTGAGTATTAGAGTAGGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAATTGCATGTATGTTGGCTGCGCTCAATTATCCCAGTCACTTACTGGTGTAAGCGCTTGGGGATTGACTCAACTACTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTCTGGAATAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGTGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //