Array 1 8009-8159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFOQ010000001.1 Streptomyces geysiriensis strain S19 NODE_1_length_188923_cov_133.769050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8009 29 100.0 32 ............................. GTGACGGCCGACTCGGTGATCGAGGAGCGCTC 8070 29 100.0 32 ............................. TGTGCGGGAACTTGGACCAGGCGATGCAGTTG 8131 29 75.9 0 ...............T...A.G.A.CT.G | ========== ====== ====== ====== ============================= ================================ ================== 3 29 92.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : AATGCGTGCCCACCTGCTGCGTGGTCTCGTTCAGGTCAGCTCAAGTGTGACGGCGGCTGTACTCGCCAAGGTCCTCTTGGCGTGGCTGGACCTGTAAAACGGGGAGGGGGCCAGGGACGTCGGGAGTACACCGGCGTCCCGCCTGTAGAACCTCGAAGGGCTTCGCTGTTGCGCTGCGCTTGCGCGATGACTGTGACTCAAGGCCATCACCCAGCACAGGGCGGCGGCCTTCGTCGTGAACGAGTTCATCCGAACTTGGCGACCATGGCGTCCGGGGAGGAGCTAGAGGAAGCCGTCGACATTACCGAGCAGCAGCGCCAGGGACCATCCCCGCGGGTGCGGGGAGCAGCGTTCGACCCGGGCCGCGGCGCCGGCCGCGACGGGACCATCCCCGCGGGTGCGGGGAGCAGACAAGGGCTGTGTCTCGGTCGTGGTCATGTCTGGGATCATCCCCGCAGGGATGGTCCCCAGGGGCACGAGATGGCTGCGGTGATCGAGCG # Right flank : GCGGTCTGGGTGGGTCGGCGGGAAGGTCCCCCGCGACGAGGCGACCAGGTCGTCCCGGCGCCAGCGAGAGTTGTCCGGTGGTGCAGGCCCACGCCGACTCGGTATCAAGTCGTCCCCACATCTGCGGGGGTAGCTCAAAGGCCGGGGCCGGCGAGCACACACCGGGCCAGTCGCCCCCACCCCCGTGGGAGTTGCTCCGCACTGATCGGCTCGCCCCGGACGGCGAGGCCGTTGCCCCCCCCCAACCGCGGGGTAGCTCTGTCAGCCCCGGCTCGTACGGTGATCGCGAGGTGTCGTCCCCGTGCCGGGGGGGGGATCCCTGGAGCACCTGATCAGACGGACGCTGGGCTGGTTGTCCCCGCACTGCGGTGGTAGCTCCTGTTCGACGGTCCGCTCGGGTGGGCACACCAGGTTGTCCCCTGGGAGCCATGCCGATGGCCATTACGACAGCTCCCAAGGGATGTAGCCGAGGTTCAGGTGCCCGAGTCCAGCCAAGCGCT # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 673-97 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFOQ010000226.1 Streptomyces geysiriensis strain S19 NODE_226_length_11421_cov_58.697607, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 672 28 100.0 33 ............................ CGGCTGTTCCTCTCCCCCCACACGGTGAACACG 611 28 100.0 33 ............................ GCCGTCGACCTGGGCTGCGGCGCTGCCCCAGAC 550 28 100.0 33 ............................ CACCGCGTTCCCGCTGCCGATGTGACTGCCGTT 489 28 100.0 33 ............................ CTTCGGCCGGAACCGGCTCGCGCAGCTGCTCAG 428 28 100.0 33 ............................ TGTGCTGCCACCCGGACGCCTCGTCGACTTCGC 367 28 100.0 32 ............................ CGGAGGAGTTCAGCCCATCCATGCGCAGCGAC 307 28 100.0 33 ............................ GGACGCGGGAGTCACCGGCACCGACGCCGAAGT 246 28 100.0 33 ............................ TCCTCGCCGCCTACGTCATCGCCGGGGTGGCCA 185 28 100.0 33 ............................ GGAGGTGGCCTGGTGGACGGGGGCCGACGCCGC 124 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 33 GTCGTCCCCGCACCCGCGGGGGTAGCTC # Left flank : GCCGGCAGCCGCCTCCACGTCAGACCCGCCGCCAGCACCGGTGCGGCCTCGGCCGCATCCATGGCTTGAAACGCAGGGCACGCCTTACCGCAGTCGTGGATGCCGCACACCCACATGAACCACGACCGCCCTCGCCCCCCGCTGACCTCATCCAGCCGCCGCCGGAACGCAGCCGACACGTACTGGTCCCACATCACCCCAGCCACAGCAGCCGTATCCAGCAGGTGCCCCAGCAGCAGATGCGTCCGCCCACCATTACGCGCAGCCGACTTCCCCCACAACCGCGACACCCGCGTAACGACCTCATCGGCCAGGCCCATCGACCGCATCACCTCAACGACCGACCGCTCATCCTCCACGCCCACCCCCCTGAAGACTCGGCTGCTCGCAGCCAGTTGGTGCCGGCACTGTAAACGGAGCCACTGACAATGCCCCCCCGGGGCCGAAACGAGGCGAAGGAAAACAGATACCCTTGCTCACATCTCCGCAGCTCACGAAGT # Right flank : CCGGGAACGGTGGGAGGCCATCGACGGATCTGATGGTCGTCCCCCTGAAGCTCACCCCGCGCGTCGACGGGGCCGCGAGCACCCTGACCGTGGAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11174-11324 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFOQ010000226.1 Streptomyces geysiriensis strain S19 NODE_226_length_11421_cov_58.697607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11174 29 100.0 32 ............................. TCTGCTCCTGGAACGGTCACGCTCCCCTCAGC 11235 29 100.0 32 ............................. CACCTACGGAAAGAACGGTTGGCACCCGCACC 11296 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTCGTCCCCGCGCCCGCGGGGGTAGCTCT # Left flank : GGCGGCGACCTGCCGGACGAAGACCTCGGCGCTCTGTGGGACGACGGCGACAACATGGTCAGCGGCGGCCGCAACTGGAGCGCCACGCACCACCTCGACATCATCCCTGAACCCACCCCTGCGGAGCCGGCCCCGTGAGCGCCGGGACGACCGTAGTCGTTCTCATCGCGGCCCCGCCCGGGCTCCGGGGACACCTCACCCGCTGGTTCGTCGAAGTGGCCGCCGGCGTCTATGTCGGCAACCCGAACCCTCGCATTCGCGACCGCCTTTGGACCCTCCTTGCCGAACGCATCCACGACGGCCAAGCCGTCATGATCGAACCGGCGGACACAGAACAAGGCTGGACGGCCCGCACTGCCGGCCGCGACCGCTGGACCCCCATCGACTTCGACGGCCTGACCCTCATAGCCCGTCCACGTCAGAACGGACAGCCTTGGCGCCCTGCAAACGAGGTAAAGCAAAATGGCATGATCAGCTGATAAAGCCGCAGGTCACGAAGT # Right flank : CGATCTGCGGCCCCTCCTCACCGACTGGCAGTGTCGTCCCGCGCCGCGGGGTAGCTCGCCGTTGCCGCTGCTGCGCCGCCGCCGGTGGCTGTCGTCC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTAGCTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16835-15171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFOQ010000137.1 Streptomyces geysiriensis strain S19 NODE_137_length_16874_cov_74.635293, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16834 28 93.1 32 .....................-......G CGATCTGCGGCCCCTCCTCACCGACTGGCAGT 16774 29 96.6 32 ............................G CCGTTGCCGCTGCTGGCGCCGCCGCCGGTGCT 16713 29 96.6 32 ............................T CACCCGCAGCTCGTCACCGTGGCCGACGGGGA 16652 29 100.0 32 ............................. GACGAAGGGCCCCGCTCCGGATCGGAGCGGGG 16591 29 96.6 32 ............................G AGCTGACGGCCATGTACGGCGTCGGGCGCGGC 16530 29 96.6 32 ............................G TGGACGGCAGTACACACCGACACCCTTCGGGG 16469 29 96.6 32 ............................T GTGCACCGGGTGGACGTGCTGCCCCTGGATCA 16408 29 96.6 28 ............................T TGACGCCTCCAGGAGGCCGTGGAGGCCG 16351 29 100.0 32 ............................. CCCCAGACCTACACCGTCACCCGCAGCACCAA 16290 29 100.0 32 ............................. AGACGACAGAAAAGTCGTACGTGGAACCCGTC 16229 29 100.0 32 ............................. GATCCCGAGGCCGACGAGATCAGGCACGAACG 16168 29 96.6 29 ............................T CCTGGTACGGCTTGTCCGAGGGGGTCACA 16110 29 93.1 32 CC........................... TCGCCAAGGGCACGTCCGGCTTCATCGTGATC 16049 29 96.6 32 ............................G CCGATCAGGGCGAGCCGGGCGGGCTCGGGGAA 15988 29 96.6 32 ............................G GCGAGAAGGAAGTCGCCACGCGTCGCTGGGTT 15927 29 100.0 32 ............................. CTGCGGCCCGACCGGCCGCTCTGCCACGATCG 15866 29 96.6 32 ............................T GCTGGACTGCCGTACGAACAGTCACGGCCCCG 15805 29 93.1 30 .......T....................G CTTGTCCCGGCCGCGCGCGCCCGCCGACGC 15746 29 100.0 32 ............................. CCGTACAACTGGCAGGATGACCCGGCGTTCGC 15685 29 100.0 32 ............................. GTCAGCCGCTCGTAGCCGATGCCCTTCCCGCT 15624 29 96.6 32 ............................G GGAGGGCGTGGGGCCCGGATGCCTGGGGCCTC 15563 29 100.0 32 ............................. ACGTCGCGCGCGGGCCAGGTGTGGCTGGTGCA 15502 29 100.0 32 ............................. TTGCGGCGGGCGGTGGCCTCGCTTCCCCACCA 15441 29 96.6 32 ............................G ACACTCTTCAGCGTCGGACCGGGGGCGGTCCG 15380 29 96.6 32 ............................G CCGTCGACCTTGCGGGTCAGGTGGAACGTCAC 15319 28 93.1 32 ............-....A........... CCCTTGATCCACTGTCGGGGGTGATCACTACG 15259 29 93.1 32 .................A..........G ACGGACCTCCAGCTTGCCCGGACGCACACCGT 15198 28 93.1 0 .....................-......G | ========== ====== ====== ====== ============================= ================================ ================== 28 29 96.9 32 GTCGTCCCCGCGCCCGCGGGGGTAGCTCC # Left flank : GCTCTCCACCGTACGGAAAGAACGGTTGGCACCCCGCAC # Right flank : ATCAGCGGCAACACCCCGGTCGTCACGGGTAGGTCGTCCCCGCGACGGGCTTCGCAGTCGACGAGTTGAAGCGACCACGCGCGAGCGGTCAAGGCAGCGGGTCGAGGGTCGAGGGGTCAGCGCCTGTGGGTGACGCCTTGTAGAGGTCGCGACCGATCGGAGCCCGCGCGCGCCGCTTGGGCCAAGTCGGCGACGTTGGTCTTCCCAGCCCTCGGCTGACCACCACGACCGGACGGGCCTGGGGCACGGCGCTCGCAGCGGCTGGGGGCAGAATCACCCGCCCCACGACCCCAGGACAGCCCGGCTCTCGCGGCGGAAGTACGGCGCAACCGTCCACGTTGTCCGCAGGATCTCCAGCGCTGCAGACAGTGCGCTGCATGCCCTGCACCCACCCCGCATGTGTGCGATCCATGAGTGAAATACTGCTAGATTCATTGTGCGATCGGAGTAGGGTGACTAGTGAAGGTGAGCCCGTGCCCACTGAAGATGAGCTGTTCAGC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTAGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61-5123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFOQ010000106.1 Streptomyces geysiriensis strain S19 NODE_106_length_20069_cov_54.053862, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================== ================== 61 28 92.9 33 ...........A..C............. ACGGTGGCCGCCTACGCCAAGTGGCAGCGCAAG 122 28 92.9 33 ...........A..C............. CTACGCCGACACCAAGGGCCTGACCGGCAAGGA 183 28 92.9 33 ...........A..C............. CCCCAGCGGAGACGTCCACTTCGGCCCCGTGAC 244 28 92.9 33 ...........A..C............. CCGGGAGGGTGGTCGCCGGCCTGGGACTCGTGC 305 28 89.3 33 C..........A..C............. GGAGCCCCGACCGTGTCCAACCAGACCCCGACC 366 28 92.9 33 ...........A..C............. CTACGCGACCCATCGGTACGGAAAGAACTGGAC 427 28 85.7 33 ......T....A..C..A.......... CGGCAACGATGTGCTGCGGGAGCGGGCGGAGTG 488 28 92.9 33 ...........A..C............. GATGGCGGCGAGCTCGGGGTCGTCGTCGAAAGG 549 28 92.9 33 ...........A..C............. GACATACGGCCCCGTCGTCACGGACGTGCGCGC 610 28 92.9 33 ...........A..C............. CCGCACCGAGGCTGCCTGATCCGTTCTGGCGGT 671 27 89.3 33 ...........A..C..-.......... CGCCACCGCGCTCGCGTCCTGGCTGGTGGAGGG 731 28 85.7 33 ...........A..C........T.T.. CAGGATGTCGACGTCACCGACGGCCGGGCTGTT C [736] 793 28 89.3 119 .................C...A.T.... TCTCCGGGGCCTCCCTCGGCCCCGCTGCGTCGTCTCCGCACTCGCGGAGCGCCCTACGGGGCCGAAACGAGGTGAAGAAAAACAGCTACCCGTGCCCACATCTCCGCAGCTCATGAAGT 940 28 100.0 33 ............................ AGCAGATCGCCGTGTGCGGCAGGTGGATCTCCT 1001 28 100.0 33 ............................ CTGCGTCGCCCGCGCTTTCGACCGTTTCGAGGT 1062 28 100.0 32 ............................ AGGGGCCCGTCCCCCGTCACGGTGGACAGGAA 1122 28 100.0 33 ............................ CACGCATCTCGGTGTCCGTGCAGGGCTGGTCCT 1183 28 100.0 33 ............................ CCCCGCGCCTACCTGCGCTACCGCACCCGCCAC 1244 28 100.0 33 ............................ CTGCACGGTGGCGCCGGTCGCGACGATCAGGAT 1305 28 100.0 33 ............................ GTTCAGTTCCTGGGCGAGCAGGCCGGCAAGCGA 1366 28 100.0 32 ............................ ATCACCGGCAGGAGGTGGCTCCACCCATGCTC 1426 28 100.0 33 ............................ CTCTCGCGCCAGGACCTCAAGGACGGTCGCCGG 1487 28 100.0 33 ............................ CCACCCACCGGCCCGCAGACACCCGCGAACCCC G [1504] 1549 26 92.9 33 .....-...........-.......... CGTGCGCAGGGCGACGGTCGGTTCGGGCACGAT G [1573] 1609 28 100.0 33 ............................ CGCCAGCCACGGCGAGCCCACGGTGTACCCCCA 1670 28 100.0 33 ............................ CCGACCAGGGCCCCGGGGTTGTCTCCCCGGGGC 1731 28 96.4 33 ..T......................... CAGGCTGGTGGTGCGCATCGGGCCGGTGCCGCG 1792 27 85.7 92 ...........A..C..-........C. GCCGTCCAAGATGTGCTGCTGGAACCAGGCGCGTTCGTTCCCGCACTCGCGGGTAAGTCCGGGATGTTGTGCACCCGCAGGCCGTTGCCGGT 1911 27 82.1 32 .......T...A..C.......-C.... GTAGGAGCACCACCCAAGACGGACGACCGCCT 1970 27 82.1 59 C......A...............T.-.G GGCGAAACGAGGTGAAGGAAAACAGCTACCCTTGCTCACATCTCCGCAGCTCATGAAGT AT,C [1989,1992] 2059 28 92.9 33 ..T....................C.... CTACCGCGAGTTCTGCGCGGAGCACATGGACGG 2120 28 92.9 33 ..T....................C.... GCTCCAGTCCGGCTGTCCGTTCTCGTTCATGTG 2181 28 92.9 33 ..T....................C.... CGGGCCGTCCGGGCTCCGCGCGCACGACCCGCG 2242 28 92.9 33 ..T....................C.... GCGCGGATACCCGTACACCTCCCGCCGTCACGC 2303 28 92.9 33 ..T....................C.... GCTTCGACGGCCGGGGAGAATGTGGGGAGCGAA 2364 28 92.9 33 ..T....................C.... CACCGAGACCACCCTCGGCACCACCACGGCGGC 2425 28 92.9 33 ..T....................C.... GCCTGCGGGAGCATCCCGGCCACGAAGGACAGG 2486 28 92.9 33 ..T....................C.... GTAGCGGCGCAGGCGTGCGGTGCGCCACGGGTT 2547 28 92.9 33 ..T....................C.... CCTCTTGGGGTCGATGGTGTAGAAGTCCGAGGA 2608 28 92.9 32 ..T....................C.... CATCCGCCCCTGGTGGAAGGCGGGCGGGACCC 2668 28 92.9 33 ..T..........G.............. CGAGGAGCCGAGCCAGCCGACGAAACCGCCGAC 2729 28 89.3 33 ..............G........TA... CAGCCCGTAGGGCACGTAGTCGGCGATCTCCCC T [2743] 2791 28 89.3 33 ..............C........T.T.. CCACGCCGGCGATCCCCGGGCCGCGCTCGATGC 2852 28 82.1 33 ...........A..CA.......G.T.. CATCTGGGCCGGGCAGGCCAAGGCCCTGAACCT 2913 28 85.7 122 ...........A..C..A..C....... GGCCGACGGCATCGTCGCTGAAGCCGAGCAGTTGTCGTCTCCGCACCGCGAAGTGCCTTGCGGGCCGAAACGAGGTGAAGGAAAACGGATACCCTTGCTCACATCTCCGCAGCTCACGAAGT 3063 28 96.4 33 .......................T.... CCCGGACTTCACCCCCGACCAGAAGCACGGTGT 3124 28 96.4 33 .......................T.... CGCCCCGTAGTACGGCAGCGACTCCACGTTCCG 3185 28 96.4 33 .......................T.... TGGCGCACAGAAGGACGGCGAGCCAGGCGAAGA 3246 28 96.4 33 .......................T.... GTCGCGTTCGCCCTCGGCATCGGCTACGGCACC 3307 28 96.4 33 .......................T.... CGTGAACGCCCGGCTGCCGAAGGGGCCTGCGGG 3368 28 96.4 33 .......................T.... CCGGTTCTGGGCGTCGACGTAGATCGTCGCACT 3429 28 96.4 33 .......................T.... GGGGCGGCGGCCGGGCTCGCCGACGACGTGCCG 3490 28 96.4 33 .......................T.... CATGCAGGTCAGCGAGGGGGAACCGGCCCGGAA 3551 28 96.4 33 .......................T.... GACGGCGCTGGCCGTCTCCTCGTCGTTCTTGGC 3612 28 96.4 33 .......................T.... GCTGTGGCGCGACGACTGGACCGGGAACACCCG 3673 28 96.4 33 .......................T.... GCAGTCCCGCGCGGCCCGCACGCTCGCCGCGGA 3734 28 96.4 38 .......................T.... TATGGGTGGGTGGTGAGGGGGAGCTTGAGGTTGGCCGA 3800 28 85.7 121 .......G...A..CC............ CTGGGAACACCCTGCCCGGTCCGCCATCGAGCCGTCGGTCGCGCACTCCAGGTGCCTAGCGGAGCCGAAACGAGGCGAAGGAAAACGGATACCCTTGCCCACATCTCCACACTCATGAAGT 3949 28 92.9 33 ..G..........G.............. TTGTTCTGGGGTCGGCATATCGCGGTGCGGTGG 4010 28 96.4 33 .............G.............. CCGGCAGTCCTCCAACCGGCCCCGCTAGGGCCC 4071 28 96.4 33 .............G.............. GAAAGGCAAGCTTGGAAGCCTGACGCCTTTCGA 4132 28 96.4 33 .............G.............. GTCCCCCACCCCTTCCCGCCAGCCTGTGCCCAT 4193 28 92.9 29 .............G.............T CAGTTCCTGCTCGGCCTCGCGCTGGGCCA 4250 28 82.1 33 .GA........A..C.........A... GCACCGCGGCGTCGGCCAGCTCACGTACATGAA 4311 27 75.0 33 ...........A.TC.-TC.......C. GCCGTCCAAGATGTGCTGCTGGAACCAGGCGCG 4371 27 78.6 33 T....T.....A.TC..-.......... CGGGATGTCGTGCGCCCGCAGGCCGTTGCCGGT 4431 28 85.7 32 .......T...A..C.......A..... GTGGAGCACCACACCATGACGGACTACCGCCT 4491 28 92.9 33 C......................T.... GTCCACGCCGTACTCCAGTAGTTCGCCGTCGGC 4552 28 96.4 33 .......................C.... GCGACGCGGGATCGTCGTACTGGACTGGCGCGT 4613 27 75.0 33 ..T.GT........C.-.....GG.... TACGACGTCTGCACGGCCGGGCGGCAGGCTCCA 4673 28 85.7 29 .............TC..C.....T.... GTCGGCGACCAGATACACCCCCTGGCGTC 4730 28 92.9 33 ....A..................T.... CCCCGGGAGTCGAGGCCGCTCCGGAGACTGAGA 4791 28 96.4 33 .......................T.... CAGCTCGATCGCCACGACGTTGCGCTTCGCCGG G [4802] 4853 28 89.3 33 .............TC........T.... CTGCCACAGGGACAGGATGAGGCCGCACAGGGC C [4869] 4915 28 89.3 90 ...........A..C....A........ CCGCTTCCGGCGACGTTCACCCTGGACCTGGACGTCGCCGGAAGCGGGGGTAGCTCCCCGACGGCAGCCGCCCAGACCTCCGACCCGTAC 5033 28 100.0 33 ............................ GTTCCGGCATGACCTCTACACCGAGCGCACTGG 5094 28 85.7 0 C.............C........T.A.. | CG [5101] ========== ====== ====== ====== ============================ ========================================================================================================================== ================== 77 28 92.6 38 GTCGTCCCCGCGCCTGCGGGGGTAGCTC # Left flank : GAGCAGCTCCGGCAGTTCGGAGGAGATGAAGACGACCGCCTTGCCCTGGGCGGCCCCTCGG # Right flank : CGCCGAGGCGGTCCGGTTCCAGCTCCACGTGACCGCGGGGACGACCTCAGGAGGGAGTGGATGACTCCGTAAGCCCGGGAGCTGCCCCCGCGAGTGCGGGGATGACACGTGGCCGCGTCCAGACAGGGAGCAGGCGGTCAAGCTGCCCCCGCGGGTGCAAGTACGACAGTGACGAAGGCTTCCTGGCCGGCGAACCCGCAGACGCGGGGACGACGCGCGGCGGCCACCGTCAGTAGCAACGTGGCCGAACTATCCCCGCGGGTGCGGGGACGACCGGGAGGGGTGGCTCGCCGTACGCATCGTCCGGCGGCGGCGCGAGCTGGTCGTCCCCGGACCGCGGGGGTAGCTCGTCGTGGGAGCTTACGCCGACGCGATCGGCGGTGTCGTCCCCGCGCCTGCGGGGGTAGCTCTCGATACGGCGCGGCGCAGCGGGGGCTACTCGCGCCGTCCCCGCGCCCGCCGGGGTTGCTCCTCCTCCCGGCCCTTCCGGACATCTCGCC # Questionable array : NO Score: 4.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-0.41, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [23-61] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //