Array 1 176690-174829 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWB01000004.1 Salmonella enterica strain BCW_6273 NODE_4_length_340223_cov_3.21132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 176689 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 176628 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 176566 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 176505 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 176444 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 176383 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 176322 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 176261 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 176200 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 176139 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 176078 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 176017 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 175956 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 175895 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 175834 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 175773 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 175712 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 175651 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 175590 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 175529 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 175468 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 175407 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 175346 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 175285 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 175224 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 175163 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 175102 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 175041 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 174980 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 174919 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 174858 29 93.1 0 A...........T................ | A [174831] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 194151-193330 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWB01000004.1 Salmonella enterica strain BCW_6273 NODE_4_length_340223_cov_3.21132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194150 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 194089 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 194028 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 193967 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 193906 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 193845 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 193784 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 193723 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 193662 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 193601 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 193540 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 193479 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 193418 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 193357 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //