Array 1 18632-17688 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAEUYL010000048.1 Escherichia coli strain 1556m1 contig00048, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     18631	    29	  96.6	    32	............................C	GACGAGAATTACGTGACGAAGCGCGCGGCAAA	
     18570	    29	 100.0	    32	.............................	AACTGCTGGAATTGTTTGATCAATTACCGGAC	
     18509	    29	 100.0	    32	.............................	ATCATCACAGCCAGCCTCAAAGAGGTTGACGT	
     18448	    29	 100.0	    32	.............................	GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT	
     18387	    29	  96.6	    32	............................C	TGATCACATCATGTTTATTCGCGGTCGTATTG	
     18326	    29	 100.0	    32	.............................	GGCACGGAATTGTTATGCTGTTCCCCTGACCG	
     18265	    29	 100.0	    32	.............................	ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG	
     18204	    29	 100.0	    32	.............................	GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA	
     18143	    29	 100.0	    32	.............................	GGACAATGTGAAAAGCTTAATATTCATTACAT	
     18082	    29	 100.0	    32	.............................	CGACGTTTTCTAATATCACCCAGCAATCAATT	
     18021	    29	 100.0	    32	.............................	ATTTCATCAAAGCATTAAGGGATGGAATAAAG	
     17960	    29	 100.0	    32	.............................	CCAGCCGAAACAACGCCAGCAAAATCGACCGC	
     17899	    29	 100.0	    32	.............................	GGATATAGAGCGGGTACTCGAGCGGAGCGGGG	
     17838	    29	 100.0	    32	.............................	CCAGGACAGGCCGTGACGGTTGCCATTGAGTC	
     17777	    29	 100.0	    32	.............................	TTTTTGTTCTCTTCAAAACGCCGAACAACCAA	
     17716	    29	  93.1	     0	............T.....A..........	|                               	
==========	======	======	======	=============================	================================	==================
        16	    29	  99.1	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA
# Right flank :  GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [2-2] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.51   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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