Array 1 9409-9014 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXH01000003.1 Photobacterium damselae subsp. damselae strain 206328-2 Contig_000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9408 29 100.0 32 ............................. GCTCAAGGACAACAGACAGAGAACAAGATCCC 9347 29 100.0 32 ............................. TTGCCAACGGCTGCTAGGTTCCAGACAGACAA 9286 29 100.0 32 ............................. AATAACAACAGCTCCGACTGATTGAGCTATAA 9225 29 100.0 32 ............................. ATAAGTACGGCGTTAGACTTTGTGCCAACACA 9164 29 100.0 32 ............................. AGTGGCTAATCCATCACTTTGTAGGCGAGGAA 9103 29 100.0 32 ............................. CAGACCGAACAGAATCGACAGGTCATGCAGAT 9042 29 93.1 0 ........................G.G.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCTATACCCATAGGGATGAACCG # Left flank : | # Right flank : TAGCAGCCCGTGATCTCCGCAGTGAGTCAGTGCTAAACGAAACTCATACAGATGATACGATATACTCGGCTCGCATCGGCATATTTATATTTCTGTTCACGCTAGGTATGTACTCACAATTAGTGATGCAGCCTAGGGTGAGTATTGCCAAAATTCCACTCAACCTCTCTCTTATCCGCATTATTCTATAGCTGTGAGTTTATTCGCAGTATTACTTTAACAGCTGTTGCACGCTATTTGTCTATCTTCACTTAAGGTTGTTTACTATGAGCTATTACGATTACTGGGGGAAAACGGATAAATCAGATCCATCTCATTATCATTTATTACCCTATCACAGCTTAGATGTTGCAGCAGTTGGACAACAACTACTTTCAACTGATGCGATTTTAACTAGTGAGTTGTCTCAACTACTTGATATTGATGAAAAACAGCTATCTAACTTGGTGGTTTTTTTTATTGCTTTGCATGATTTAGGGAAATTTGCCTCAGCATTTCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACCCATAGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29227-28895 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXH01000062.1 Photobacterium damselae subsp. damselae strain 206328-2 Contig_000062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29226 29 100.0 32 ............................. TGATGGGCGTCAGATTTGTAGACAACATCTGC 29165 29 100.0 32 ............................. GTTTTAGTCGTAGCAGGCCAATAAATGAGCAC 29104 29 96.6 30 ............................A GATAGACGGCCATATTGCCGCGATCACTGA 29045 29 100.0 32 ............................. GGTAAAGACTTTGACTTGCACTTGGTTCACCT 28984 29 100.0 32 ............................. CAATTAGTCATGGAGTATGACGTTGCCTTGGC 28923 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCTATACCCATAGGGATGAACCG # Left flank : | # Right flank : TGATGGCCTTGGCCTTATTCGCTCGTTCCACTGAGGTAGAACGCCACTGACTTATCGTGCTTATGATATATTAGTGTTACCGTCATGTAAGAAAACGTTGACTCAGACTCACAAAAATACATGTGTATGATTGCGCTTGTTGCGTCATCAATAAACGCCAATAACGTGCATTCGTCAGCTCATCCTTCAAACCAATAATGGGGTGAACCATCTACTTGAGCTAGCACACCCAAACAATCACTCCTTGCGCAAGGTTGGTATACTTTCCTACACTTTTTCTGTTTTGGCATCCAAAGGTTGTTAGTAATCACCCATTGACGAACCGCCTCGCCTGATAAATATATACTATTGATTTATAATGATTTTTAAGCAATTTAATTAAGACAAAAATCATAGTGATGTATTTGGATTAACTCCAGAACTAGGGATTTAAGGAGGAAGCAATACTGATGGTTCCCTGGTCGGGTTCACTGCTTAGAAATAAGTCCTTGAAGACCAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACCCATAGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19687-19477 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXH01000084.1 Photobacterium damselae subsp. damselae strain 206328-2 Contig_000084, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19686 28 100.0 32 ............................ TTTGTATGTGAAGCATGAGTAGCCATCTTCAT 19626 28 100.0 32 ............................ TTAACTGAAATTTATGAGTTTTTGGCGGAATC 19566 28 100.0 32 ............................ AAACGAACCACATTTATTCGTGCTCAAGAACA 19506 28 75.0 0 A.T......T.....A......TT.T.. | TA [19485] ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTGAACTGCCGAATAGGTAGCTGATAAT # Left flank : | # Right flank : TTTCCAAACTTACGGCAATAAATCTCTCACATCACATTCGAAAACTGCAGCTAACTGATGTGCCTTTTCGAGTGTGATGTTTACTTTTCCACATTCAATTCTCCTAACATAATATCTGTCAATGTTTACTTGTAAAACCAGTTACTCCTGAGGCACACCTTGTTCTCGGCGTTTATTACGTAGGTCGATACCAAATCGTCTAGCTAAGTATTTCTTTTAATTCAAACCACAAAATGAAAAAACTGAATAGACACCAAATCAGTAGACCCTCTTTAACTTACTTTCATATTGTTTTTCATACTCTACTAGCGACAGTCGGCGTTTAATGTTGTAGAACATCTCAATATATTCGAATATGTCCATGCAAGCTTCTTCTCGAGTGCTGTAGATTTTCCCTTTTGAGTAACTGGAAAAAACTCTCTGCAACTGCATTATCGTGATAGTGACCAAGACAACTCATACTCAATTCAAGACTATGCTGTTTCAAAAACTTGTCCCAG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGAATAGGTAGCTGATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //