Array 1 32125-31917 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMTO01000004.1 Vibrio cholerae strain OYP1G01 Vc_OYP1G01_Contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32124 28 100.0 32 ............................ TTTAGAACTTCTGGCACTGTCACAGGTTTTGT 32064 28 100.0 32 ............................ TATTAAGCCGCTGGTCGATTTGGGTGAATGGC 32004 28 100.0 32 ............................ GTCATAACTGCGAACTACTTCCCCATTTTTCC 31944 28 92.9 0 ........C..................T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTGTTCTGTCGAATAGGCAGCCAAGAAA # Left flank : CATTGATGGTTAATGAAGGTTTGTTTGAGATCTCCAGTGTTTATGAGGTGCCAGATACTTCCGAAGAAGTAAGGTTTGTTCGTAATCAGACGATTGGGAAAAACTTTTTGGGTTCCAAAAAGCGTCGAATCAAACGCAGTATGGCTAGGGCCGAGTTATTTGGTATTCAACAATCATTACCAGTAACGAATGAAGACCGTGCCATCGATAGTTTTCATCAAATCCCTATTTCTAGCGGCTCTTCACGGCAGGATTATATTCTGTTTATTCAAAAGGAACTCGCAGATGAGCGTGCTGAATCTGGCTTTAATAGCTATGGTTTTGCAACCAATCAAGAAAAAAGAGCGACGGTACCTGACTTACGTTTTAACCCTTTTGACGAAGACTCTTTTTTAGTTCAGTAGAAACAAAGAGTTACAGTTGTGAAAATAAAAATGGTGTTTTTACCAAGTTGTGACTTTAAGCAAGAATGATCAGATGCTTAGTGATTATATTTTATA # Right flank : AGGTCAGGAAGAAAGCAACCTACCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTAAGTTTTTGGCTTGGTGGTTTTTTGTTTTACAGCTTGTGTTGTGACGGCGGATTGGTTGTGGCAATTTAAGAACTGCAACGCACTTTTGCCCCTTTCCTGCTTCGTGCGATTACTCAGCAATAGATTACTCTGCTGAGTTTGCTATACGTGAGGTTATGGCAGATACCAGAACGCTGTTACATGGAATCTCCCATTTTCGAGCATCACACCGTCTATGCCCAGTAGCCTTACTTTTGCATAACAATTCGCTTAGCTAATCACCTACTCTAAAAGAAGTGGTCCAGACAAAGCCTTTCATAGAAATTGTTCTTCAGCTTATGTGCTTTTATCTAAATTTGCTTGGCACTGTAAGTGTTTAATAAACATCGGAATCTTTTTCGCCAAGTGCTTTCGGGAAGAATAAAAAGCATACAGTACTAAATCATCAGGCTCATACT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGTCGAATAGGCAGCCAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 51152-55381 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMTO01000006.1 Vibrio cholerae strain OYP1G01 Vc_OYP1G01_Contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51152 28 100.0 32 ............................ TGACTTTATATTAGAGCAAGAAATTACCAACG 51212 28 100.0 32 ............................ CACAACTACATTCCCGATCTTGAAATGAAGAA 51272 28 100.0 32 ............................ TTGAACAAAATGGACAAGATGAAGCGAAAATT 51332 28 100.0 32 ............................ AGTAGAAAATGGAATGTTGTATTTGACATTGC 51392 28 100.0 32 ............................ TTCCATGTTTACAACGGGCGGAAGTCGGTTAA 51452 28 100.0 32 ............................ TTAGCTAGATACTCCCTTACGTGCTTTACTAT 51512 28 100.0 32 ............................ TTCTGCCCATTTTCTCGACAGCTCCGCATTGC 51572 28 100.0 32 ............................ GTTTCAGTCGGTCGCGTGTCTTGCTGCGTTTG 51632 28 100.0 32 ............................ TGAAGTGTATCCGAAGCCCTAAGAAGTCGTAC 51692 28 100.0 32 ............................ GATTCCTTGAGACGTCAGGGACAAAGTTCAAT 51752 28 100.0 32 ............................ ATACTTAGCGCTGATAGTTTTACTGACATCGG 51812 28 100.0 32 ............................ TATACAGGTATGGCTATGAAGATTTTTCAAGG 51872 28 100.0 32 ............................ AGACCCAACGCCCGGTGACAATTTAACGCCTC 51932 28 100.0 32 ............................ ACCCGTCAGCGTTGCGTCAAAAATACCCGTTA 51992 28 100.0 32 ............................ TTTTTTGAGCACGAAAAGGGCGACATTAAATC 52052 28 100.0 32 ............................ TTGATGGATTTAAGGCATTGGAAAAACAGGGC 52112 28 100.0 32 ............................ ACTGCCTGCGTGGGTGTGACTACCCACTTTAT 52172 28 100.0 32 ............................ AGTAAGGGAAATTCGTGATGCAAACATATACT 52232 28 100.0 32 ............................ AGACCAATGCCAATACAAGCCCTGCTCTTGTG 52292 28 100.0 32 ............................ TCGAACTGATGGCGCATTCTCTGGCGCTTTCT 52352 28 100.0 32 ............................ AGACGGCAGTACAGAAAAGCGCTATACCGTCA 52412 28 100.0 32 ............................ TCAACACACTCTGAACGTATGCTACTGCATAG 52472 28 100.0 32 ............................ TGAGAACCCGAACCCTGAACCACCTAGCCCGA 52532 28 100.0 32 ............................ ACTAAACGCGCTAGGCCATTGCGCCACACGCT 52592 28 100.0 32 ............................ TCAAGCAAGTCTCGATAAGCTTCATCGCTGAG 52652 28 100.0 32 ............................ AAATGTGCGCAACTCCTGTGGGTGGTATGTTT 52712 28 100.0 32 ............................ TTCATTGAGCTTGAGCTTGTCAGCCTCAACAC 52772 28 100.0 32 ............................ AATCAGTAAAAATACGGTTGGTATTGATTTAG 52832 28 100.0 32 ............................ TTATGTTGCAAGGCTTTAGGGCGTGGTTAACA 52892 28 100.0 32 ............................ TGAATCTGAATGGCCGCTTTTAAGTAGAACTC 52952 28 100.0 32 ............................ TGACCCAGAAGATCGCCCCATGTTCTGATTGA 53012 28 100.0 32 ............................ TAACAGGAAACGCTTCTGGCGTTACTGCTGAT 53072 28 100.0 32 ............................ AGTTTGCAAGATCGACTTGATGCAATGGCTCA 53132 28 100.0 32 ............................ TTCTTGAATTTTCATCGCGCTCGTGCCTATAT 53192 28 100.0 32 ............................ AGCATTAATGCTTATCAGCTCTTGCTGAACTT 53252 28 100.0 32 ............................ TCTATAACGGTCAAATTTGTTCAAAATGTCGA 53312 28 100.0 32 ............................ TGTTCATCACTGGTTTCTGAACCGTAGGAATC 53372 28 100.0 32 ............................ GTAAGAGCTATGGCTAACGGCTCGCTATACGA 53432 28 100.0 32 ............................ TTTTTGTAGTCGTCCATATCTTGACCTGTCAC 53492 28 100.0 32 ............................ GAAGGAGAAGAAGGCGAAGTGATCTCACCCAA 53552 28 100.0 32 ............................ CATACCAGCCGCGCGCTACTACACATGCACCA 53612 28 100.0 32 ............................ TATCACACGTCCGTCAGGGTAAAAGAGCTGGT 53672 28 100.0 32 ............................ TTCAGCGAATATCTTTGATGCAAGCTCAGATG 53732 28 100.0 32 ............................ ATTTAATAAGCTAGTTAACGAGTGCCAGTTCC 53792 28 100.0 32 ............................ TATGATGAGACACAAAGCTGCTATCCCAATTG 53852 28 100.0 32 ............................ TAACCCGCACGTACATATGTTACTTAATTGGC 53912 28 100.0 32 ............................ ATCAACACCACCGAAAGAGGAATGAATCATAT 53972 28 96.4 32 .............A.............. TAAAGTGTTTGCAAGTCAAAACAGATTGATTA 54032 28 100.0 32 ............................ ACAAGTACAATTTTTCACGAATTTCCCTCAAT 54092 28 96.4 32 ...........T................ TTTTCGCAAATACTCGCCACAGACCTCGGCTA 54152 28 96.4 32 ...........T................ TGAATCAAGTGGTGGTCGGACTATCCGAACGT 54212 28 96.4 32 ...........T................ ATCGAAACGATCCACGATCAAAAAGATATCTC 54272 28 96.4 33 ...........T................ AACATGCGAGACGGCCATGGCTTCGTGTTCAAT 54333 28 96.4 32 ...........T................ TTACAGGGGCTGATTGACATCATGCAAGGGGT 54393 28 96.4 32 ...........T................ AAGTGCACAGACTCTGCTCAGATGAACTCACG 54453 28 96.4 32 ...........T................ AGAGGTAATGGGCCAGAGCGGATAACCATGCC 54513 28 96.4 32 ...........T................ TGTTTCAGCATGGTGATGCTTTTCAGGTGTTG 54573 28 96.4 32 ...........T................ GCTCATGTCCTGATCTTTAAACTCACGCGAGA 54633 28 96.4 32 ...........T................ GCTCAGTGATTTAAGCGCGTTGATGGATTGGG 54693 28 96.4 33 ...........T................ TTAATAAATTTTGTGCTGTTCTTCATTTCAAGA 54754 28 96.4 32 ...........T................ TGATAAGCCCACGGTCGAAGATATTGAGATAC 54814 28 96.4 32 ...........T................ TTGACGGTTCAGGAACTCCACTTTCTTTTTAT 54874 28 96.4 32 ...........T................ AAGCCACCAAAGGGACTCTAATTGCGTCATTA 54934 28 96.4 32 ...........T................ TTTCAGCGCTTCGGGTTCGGTGGTGACTGTAG 54994 28 96.4 32 ...........T................ TTTACGCTTCTCTCTGCGATCCCTGCGATATA 55054 28 96.4 32 ...........T................ TTTAAGTGACCGTTCTTTTGATTCGCCATTTG 55114 28 96.4 32 ...........T................ GAAGCAATCATGACCATAGACATACTCGAATC 55174 28 96.4 32 ...........T................ TATGTCGTTTGGAATCCAATCGAGCCACGTCG 55234 28 96.4 32 ...........T................ TGGCACAAGGCGGAAGCGAGGAAAGACCTCAT 55294 28 96.4 32 ...........T................ AATACGGCCATTGGACAAAGCATTGTTGAACA 55354 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 71 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACCGCGACAGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAACTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGACCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTACCTGGTTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //