Array 1 7597-6578 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPBY01000012.1 Campylobacter concisus strain AAUH-43UCce-a 1098576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 7596 37 100.0 38 ..................................... ATCGCTCCATTCACGATCAAAAAATCTTATGCTGGAAT 7521 37 100.0 36 ..................................... ATTCTAGATCGAATTCTTTAACCTCTTTTTCTCCAA 7448 37 100.0 38 ..................................... CCCAAACCCACTCCATTGACTCATCCCAATGAGACCAA 7373 37 100.0 40 ..................................... ATTTCTCAGTTGCGCCTTCTTCTAGACATTCTTGCTTAGA 7296 37 100.0 38 ..................................... TATACTTAATAGCTTTTCTCTGTCTGGTTTTCTAGAGA 7221 37 100.0 39 ..................................... ACGTAGAAGATAGCAATAGCAATAAGCCATTCCATCTGA 7145 37 100.0 36 ..................................... TAAATTCCTTAATTTCCTTGCCATTTATGGCTTCTA 7072 37 100.0 37 ..................................... GTAAGAGTATATACTGTAGATGAAACTAATGATATAC 6998 37 100.0 38 ..................................... ACCGTCGCATGAACCAGACTCATAGGCTGAGTCTGCTT 6923 37 100.0 40 ..................................... GCTGGGGAATACTTATCGGCGAGATCCTTTATCTCATCTT 6846 37 100.0 38 ..................................... ATTAGGATTGATGGAAAATGACGCAACTCTTCAGTTGC 6771 37 100.0 43 ..................................... AAAGATTTCTCTTTTACAGCTTCTTCTTTAGCAGCATTAGCTA 6691 37 100.0 39 ..................................... TTTATGTAATTCAGTTGATAGCCGCTATCTTTACTTGGA 6615 37 94.6 0 ................................A...A | T [6580] ========== ====== ====== ====== ===================================== =========================================== ================== 14 37 99.6 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCATTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGGCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGACTTGCGAACTTTTTTGAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTACTAATTTTTTCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : AAATGACAAAGCGTAGGCGCTTTATGTTATAAAAAAATGTGTAGTGCTTATATGCTTGTTGAATAAATTTAGATAAGAAGATGTGAGATGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTACTTCATGGCTTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAACGTGCCCTTAGTCGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGACTAGCACGAGCAGATGAGTAAGATCTGCTTGAAGATGATGAAGAATAAGAACGTGAATAACCTTTTGCCATTTTGGCCCCCTTGTGTTGAATTATTTTGTTTTGTTGGGAGAATTATAAAAGAGTGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAATATAAAGGATAAAGTAATGGACGCTCAAACTAGGATACTATGGCTACTTAAAAAGCTAAATCGTGGCGAAATAATCGAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 28343-30545 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPBY01000012.1 Campylobacter concisus strain AAUH-43UCce-a 1098576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 28343 37 100.0 34 ..................................... TCAGCAGAAGCTAGGTGATTTTGAGCGTTATAAC 28414 37 97.3 40 ..................A.................. GTGAAACACACCGTCAATATTGTAGTAAGTCATCTTTTGC 28491 37 100.0 46 ..................................... ACAATGGAGTGTTCATTTTTATCTCCTTTATAAAAAATAAAAACAG 28574 37 100.0 38 ..................................... ATTACTGTCACTCTCTTCAGGAAAGACAAAATAGTTTT 28649 37 94.6 39 ..CT................................. GGTAATACTGATGCCGATGCATCTTCACCGCAGAATTTA 28725 37 97.3 42 ....................G................ TAATGATGTTCTCATTGTAAATCCTTTAAAAAAAATAATATA 28804 37 97.3 38 ....................G................ AAGACCCGGCGTCATAAGCCGAATCTGCGTTGAAATAA 28879 37 97.3 39 ....................G................ ATCTCCGTTTGAATAAGTGCTAGTGGAGCATTTATAAAA 28955 37 91.9 47 ..CC..............T.................. TTAGGTCTAGTCTGGACTACATCAGTGAACTCGTCGTCATCAATGTA 29039 37 94.6 45 ..CC................................. AAAGGAACAAGTTGGCGGCAACACTTTCTGCCCAAGCCATTTAGA 29121 37 100.0 44 ..................................... TATCTGTGCGTACCATAATGTACTCCTTGTGTTAAAATTTTGGT 29202 37 100.0 47 ..................................... AAAAGCTCGGCTAAGTCGAACTTTTTTGTTTGCTCTTCATCAGTAGC 29286 37 100.0 35 ..................................... TGAGAAAAAAGGATATTTTTAAATTTTCCATTTTG 29358 37 94.6 43 ..CT................................. GCTTACTAGCAATAAGCTAGCTATTAATACTCTTTTCATTATC 29438 37 97.3 41 ....................G................ ATAAAGCATGTCTCTTCACGTTTTTCGCCATTGACATTAAA 29516 37 94.6 40 ..CC................................. TACCTCTTTCGAAAAAATTTCTTCTGCAGCAATTGATCTT 29593 37 94.6 37 ...........T........................T CTTATCAAGGAATTTCTTGAGATAAAGTCTTCTTTGC 29667 37 100.0 40 ..................................... GTATTTATCTCTTCAGATTGTTTATCAAAGAAACTCTCTA 29744 37 86.5 41 ..CT................G....A.........G. CTAAAAGCAGGAAAAAAATAGAAATAATCAACTAGCACGAG 29822 37 94.6 39 ..CT................................. ATTATATCGTTTGCTCTGCTGAAGGCATCTTTTTGGGAC 29898 37 91.9 41 ..CT...........T..................... GCAATTCTCAGCGTAAAACTGATAATCTTTTTCATAATCGT 29976 37 100.0 38 ..................................... TCGAAAGAAACGATTGGACATTGTGGGATGAGGGACCA 30051 37 100.0 41 ..................................... AGCTAAAGACAGATAAAGCCTATTCATATCTTGCATATCGC 30129 37 100.0 39 ..................................... AGGAGCAGCTTTTTCTGTCCCAAAACAATTCAACATTGA 30205 37 94.6 39 ..CT................................. AACTATTCTCTTAACTATGTCTTCTGTTAACGTACTCAT 30281 37 94.6 37 ..CT................................. ACAGATGGTGCTTCTTGTCCGTTGTTTTGCTCTGCTT 30355 37 94.6 40 ..CT................................. GCGTAGCACCAATATTTGCCGTCAATCAGTGCCATGTCAT 30432 37 97.3 40 ........G............................ AACATCCCAGTCGTCAAAAGCTTAATCGAAAAAGCTGAAA 30509 37 91.9 0 ..CT...............................G. | ========== ====== ====== ====== ===================================== =============================================== ================== 29 37 96.5 40 ATTAGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : TTCTTTCAAACATCTACCTTGATCAAATGGATAAATTTCTCGAGCATAGCAGTATAGAGTTTGTAAGATACGCAGATGATTTTGTTCTATTTTTTGGCTCACGTGAAACCTGCGAGCAAGGGCTTGCCAGACTAAAAGACTTTCTAGTAACCACATAAATTTATCCCTAAACGAAGCCAAAACATCCTTGCACGACAAAGATAGCGAATTCACCTTTCTTGGCGTAAATTTCAAAGCTCACGAGCTAAGCATAGGCGAGGATAAATTTGCACGCATCTTAGCAAAACTCACAGCCTCGTCCAAAAAGCCAGAGATCGCCCAAAGCGTAGAGAACATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCGGCCTATCAATAGTTCTTTTAAAACTCATTGTTAATTCACAATCGTTTTTTAGGCT # Right flank : CGGGCAGATCTATTGAGCATAGTTCCCAAGTATTAATTCATAGATATATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGTCATATTGACCATATCTGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGACACTTACTACAAAGGTACTGACATATGGGGCGCTTCATCTTTCGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGCCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //