Array 1 220908-224773 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJMV01000003.1 Streptococcus sanguinis strain BCC04 D8877_contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 220908 36 100.0 29 .................................... CTCTTGCCATTCTTTTGAATAAACTTGCT 220973 36 100.0 30 .................................... AAGATTTTTACAGAGCTATGCAAGTAAACA 221039 36 100.0 30 .................................... AGATGACTTATATTCAAGTAATTTTGCGTC 221105 36 100.0 30 .................................... CACATCAAGCCGACTTACACCATCCGACCC 221171 36 100.0 30 .................................... GTATCTTCATTTTACAATGGAAGATAACCC 221237 36 100.0 30 .................................... GCTTTGTCTTTTACGCTATGGGCGATGGAG 221303 36 100.0 30 .................................... TTTTAGTCTTCCCATTTAGTTACCTCTTTT 221369 36 100.0 30 .................................... CACGGTCCTCAACTTATTGAAGCTGGATTT 221435 36 100.0 30 .................................... AGATGAATTTGTTTCTTACACTTGGGGCTG 221501 36 100.0 30 .................................... AAAGGAAGCCTGACTATCATAGTCTCTCTT 221567 36 100.0 30 .................................... CTCTTGTTTCTGCTCTTTGATTTCAGTAAG 221633 36 100.0 30 .................................... ATTATCCACGGGCTTTGTGGTAAACCTGAA 221699 36 100.0 30 .................................... ACCTATTGTTTTTGCCTTTAAAAATCCTTT 221765 36 100.0 30 .................................... AGTCGGGAGAGAGTGCCTGACCAAGCGAGG 221831 36 100.0 30 .................................... ACAACTAGACGGTCAATACAAGGATTTAGA 221897 36 100.0 30 .................................... ACACTTATGCAAATTAGAAAAGGCATAGGA 221963 36 100.0 30 .................................... ATGTTGCAAGTTGGTTTGAAGCTCGTCGCG 222029 36 100.0 30 .................................... TGGTTTTTAAATTATATTTAGTAGCGAAAG 222095 36 100.0 30 .................................... ATGTTGCAAGTTGGTTTGAAGCTCGTCGCG 222161 36 100.0 30 .................................... ATGTAGGAGGCGACAATAAGCCTGCTACTG 222227 36 100.0 30 .................................... AATGATAAAGAATGCTATTGCTCCTGAAGC 222293 36 100.0 30 .................................... TTAGTGGTTTATGGTCTGGTATTTCCGATG 222359 36 100.0 30 .................................... CACCGTTGAAATCACAGACCAAAATTGGAA 222425 36 100.0 30 .................................... AATTTCTTAAAATTTCTTTAAGATTTCTTT 222491 36 100.0 30 .................................... TCGTTGGCCGCCTTCATGTATGTATCTATG 222557 36 100.0 30 .................................... ATGTAGGAGGCGACAATAAGCCTGCTACTG 222623 36 100.0 30 .................................... AATGATAAAGAATGCTATTGCTCCTGAAGC 222689 36 100.0 30 .................................... CAGCAGGATTTGCTATAGGTGATACATTAA 222755 36 100.0 30 .................................... ATTTTCTGTCCAGTCAAAACCAACTGGAAC 222821 36 100.0 30 .................................... TGATCACCTCAGTACTAGCCAAAACCTTGT 222887 36 100.0 30 .................................... TTGTACAACCAACGTATTTCATCAAGGTCA 222953 36 100.0 30 .................................... ATTAAATATGAAAACCTAGAATTTGCTTCT 223019 36 100.0 30 .................................... ATTAAATATGAAAACCTAGAATTTGCTTCT 223085 36 100.0 30 .................................... CAGTGTATTATTTAAAAGTGTCTTATAAAG 223151 36 100.0 30 .................................... CACACATGGCAACAAAACAAGCAACACCAG 223217 36 100.0 30 .................................... ATTTGCAATTTTTCAAATTCGTTTGGGATA 223283 36 100.0 30 .................................... AATGCTTGAAAGCTATATTCTTTTAACAAC 223349 36 100.0 30 .................................... CGGATACACTGCTAAACTAAATGAGTTCGT 223415 36 100.0 30 .................................... CTCCACTAATTGCATTTTCAGTAACGATAG 223481 36 100.0 30 .................................... AATACTCACAAGGTCTTGACAACAAGTAAC 223547 36 100.0 30 .................................... AACTAAAATTTGACGCTCTCTACGGTTTAT 223613 36 100.0 30 .................................... AAATCATTTAGTCACAAGACCAAGGAAACG 223679 36 100.0 30 .................................... TTGATACATAATAATCAACATACCAATCAT 223745 36 100.0 30 .................................... GAATGGTCTTTTACATTGGCTAGAGATAAC 223811 36 100.0 30 .................................... GATATGGAAGGAAATAATGTCTTCTTTAAC 223877 36 100.0 30 .................................... AAGCCTAAAATGTCAGAAGCGGGAGCAATG 223943 36 100.0 30 .................................... GCAATACTCAGAAGAATATGTAATCCTTGA 224009 36 100.0 30 .................................... TAGTGCTAAAAAGGCTTATTATCGTGCTGA 224075 36 100.0 30 .................................... AAGTCATTTAGCCACAAGACCAAGGAGACA 224141 36 100.0 30 .................................... CATTTGTGTAGCCGCAAGTAAAGCAGTGAA 224207 36 100.0 30 .................................... TTATATGATTAGTAAATATATCTCGATTGT 224273 36 100.0 30 .................................... CGAACCGTGCTGTCTCCTGCATGACGTCCA 224339 36 100.0 30 .................................... CGACAAGGTAACCAGCATCAGCCAAAGTCC 224405 36 100.0 30 .................................... CTTTCAATGACCTACCAATCGGACGGACAG 224471 36 100.0 30 .................................... AAGTTCAATAGTTCGAAAATAGTAGTTCAA 224537 36 100.0 30 .................................... TGTTGATTATAGTACTAGTGGTGCTATTGG 224603 36 100.0 29 .................................... AAGCCGATACCGTAGTACCGATAGCCTTA 224668 36 100.0 30 .................................... TGATAACTCCTTCGTGTAAAGCCATGGAAA 224734 36 83.3 0 ......................TT.AT..T.....A | TT,A,T [224756,224765,224769] ========== ====== ====== ====== ==================================== ============================== ================== 59 36 99.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TCAACTAAATGATAAACCAGAAGTAAAGTCAAAAATCGAAAAGTTGTTAGTTGCGATTACAGAACTGCTGGGGTTTGAGTGTTTGGAAAATGAATTGGATCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCGCTAGGAGTCAAAGTTGAAACTCTGAGTGACACACCTTTTGAAAAGATGCTAGAAATTGTCCAAGTTTTTAAATATCTTTCAAAAAAGAAACTCCTTGTTTTCATCAATGTGACCGCCTATCTATCAAAGGATGAGTTAGGAAATCTGATAGAGTATATCCAACTCAATCAACTAAGGGTCTTATTTGTCGAACCTCGGAAAGTCTATGATTTTCCGCAATATGTGCTTGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATTAAGAGTAACAATTGGAATCTGGCGAGCTGAAGTCTAGCTGGGACGAATAGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : AAGGACTGAATAAAACAGTCCTTTTGTTTTCTATTTCCCCAAGCAAAATTGGCTGAAGAGTTGGGTGATGAGTTCGTCTGGTGCGGCGTCACCAGTGATTTCGCCGAGGATTTCCCAGGTGCGGGTCATATCGACTTGGAGTAGATCTACCGGCATACCCATTTCCAAGCCTTGGTTGACGGCTTGTAGGCTTTCCAGGGCTTTTTCAATCAAGGAAATGTGACGGGCGTTGGACAGGTAGGTAGCGTCTTGCTCGACAATGCCAGCATTTTCAAAGAAGAGCTGATTGATGCGTTCTTCAATTTTATCAATATTTTGATTGTGGAGGACAGAAATCTTGATAGCATCTGCTGGCAGCTGATCCAACTCAATCTTCTCTTCAAGGTCGGTCTTGTTAAGCAGGACGATGCGATTGCTGTCTTGGCTGATTTCCAGCAATTGTTTGTCTTGGTCTGTCAGAGGCTCGCTGGCGTTTAAAACTAATAGAACCAAGTCAGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //