Array 1 69564-70810 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVI01000003.1 Lactonifactor longoviformis DSM 17459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 69564 33 100.0 36 ................................. AAGACGGGGTGCGGGGCCCCGACGTAAGGGCCGGCG 69633 33 100.0 34 ................................. ACCTCATTCCTAATCCATATTACACCGCTTCCCG 69700 33 100.0 35 ................................. AATGTTGATGTGGATTATCTGCTTAGTGGTGTAAA 69768 33 100.0 35 ................................. TATGATTGCGGCATTGGTTGACTATACAGGAGAAA 69836 33 100.0 33 ................................. TATCAGTTCCTCTGACAGCTCGGTATATCTCCC 69902 33 100.0 34 ................................. GCCGGGATCGGAGTCACCAGTAATGGTATGAAAG 69969 33 100.0 34 ................................. AATGGCATCGAAAATATTACGAGCCTGGACAATT 70036 33 100.0 36 ................................. TATTATGTGCAAATAGTTAGATGGGAGGTGGTAAAC 70105 33 100.0 35 ................................. TCCGCTTGCCCGGTATTAAGTTAATCTCTTAACTT 70173 33 100.0 34 ................................. TGGATTCAACCGATATCAATCACAGAATATCCTG 70240 33 100.0 34 ................................. TTGAGACGGTTTAATACACTAGCTGCTTCATCCA 70307 33 100.0 34 ................................. CATTAAAACTTTTGTCATCTCTAGCAATTCGTTC 70374 33 100.0 35 ................................. TGCAGAAGATACCAAATCGTGCTGTTGAGTGGGTT 70442 33 100.0 34 ................................. ATGACCATATACAGAGAATGGGAGGCGGGTGAGG 70509 33 100.0 36 ................................. AACAACTTTGAAGATCGGGATTACAGCCACGATGAA 70578 33 100.0 34 ................................. CCCAGTTCATAGATATTGTTCAAGCGCACATCAC 70645 33 100.0 33 ................................. ACATTGTACCATGGGTTTATTTCCGTTCCATAT 70711 33 97.0 34 .........T....................... TTTTGAATCTGAACGATGTTGTCAACACCAAGAT 70778 33 87.9 0 .C.G..............G.....A........ | ========== ====== ====== ====== ================================= ==================================== ================== 19 33 99.2 34 GTCACTGTCCGTGAGGGCAGTGTGGATTGAAAT # Left flank : ATGGCATTAGGCTGGGAATCTAAAATACCGGATCTTCTTAAGCTGGCCGGAATTTAATATTCTAAGGACTGTCAGTTAATACGGAGTTTTAGTCCTTGTAGCATATAATAAGAACATTCCGGCAGGGATCAGGAGTAGTTATACTTGATTTTCCTGCGGGAGTGTTCTTTTTCTTTCAACTAAAAATATCCTGACGATGGGAATGTGATAAAAACAATGGCTCTAATTTATAAGGGCACTGCCAAAGTTCTATGAAGAATACCAAGAACTTGAGAATGTTGAGAAGCTACTGTATATTTATCAGGAAAGTAGAATGCAGTTAATCTTTCACATTGTTTGGTGCGAATGCCAAGTGAACATAAAAATCCTGGGAGATTCGCACTAAGATAATTGGAAAAAAGTTAACATAAAGTGCTTAAAAGGTTAAGGGTAAACATTAATATTGTTTGGTATGCACATATATATGTGAGAGAATGGGTATAATTTGGTACATTTTTGCT # Right flank : TTTGTTCGTCCTGAATATAGGTTCTAAAAACATTTTTATAAGCTCCTTAAAAAGTAATTTAATAATAAAGACAGAGGAAGCTGAATCCTCTGAACGGCGCATTAAGAGCTGGTATCATAAGTATGATACTGGCTTTTTTTGATGGAAAAATGCACAAAGAAACATAAATATCTGGATACCCGGAAGCAAAAAACAACGTATATTGATGTGAATTTAGAGAAATATGCAGTAAAAGTACTAAATAAAAGGCTAAATACTCCCAAAAAAGTGAAAAAGTATACAGTCAGAATTAAAAAGTGAAAGAGACAAAAATTAAAAAGTGTTAGGATTACACCATAAGAAAACAATACGGGACGGAGGAGAGTTAGATGAGAGAGGATAGATTCTCTTTAGATGGAAAAGTAGCCCTGGTTACAGGGGGTGCTTATGGAATTGGGTTTGCTATGGCGCGTGCATTAGCGGAGGCAGGAGCGAAGATCGCTTTTAACTGCAGGAGCAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTGTCCGTGAGGGCAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 236990-236151 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVI01000002.1 Lactonifactor longoviformis DSM 17459, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 236989 33 100.0 33 ................................. ATAATCTGAATATATTAAGTAATACGCTGTACC 236923 33 100.0 34 ................................. CACATCATCCCCTGATCTGTTTATTATTGCATTT 236856 33 100.0 36 ................................. AGAGAATCCCTTAAGTTTCTGTGCATCCGAGAAAAC 236787 33 100.0 36 ................................. CTTAACTGATTTCTGAAAAATAAACATAAAAAACAC 236718 33 100.0 34 ................................. AGAAAAGAAAGGCTGCTAAATGAGAGCGCTATTC 236651 33 97.0 33 .................A............... CCTGGGGCGTCCCACGGATTGCCGGGACTGTAG 236585 33 100.0 35 ................................. ATGTTTATCCCCCTATATTGAAATTCGGTCATCTA 236517 33 100.0 34 ................................. AGAAAAGAAAGGCTGCTAAATGAGAGCGCTATTC 236450 33 97.0 33 .................A............... CCTGGGGCGTCCCACGGATTGCCGGGACTGTAG 236384 33 100.0 35 ................................. ATGTTTATCCCCCTATATTGAAATTCGGTCATCTA 236316 33 100.0 34 ................................. ACAAAGCGTCCCATCAAAATCCACGGCATATACT 236249 33 100.0 33 ................................. CTTGAAATGGCGGAAAAACTGTGCTAAGATTGT 236183 33 90.9 0 ....................CA..........C | ========== ====== ====== ====== ================================= ==================================== ================== 13 33 98.8 34 GTCACTGCCTGCGAGGGCAGTGTGGATTGAAAT # Left flank : CGCATCCATTCTCCCTATCGATCCCACAGGAGGAAAGGTATATGATGCCCTGAAGATAGCTGCGGATAAAGTTGAAATTGAAAATATACCTGCACAGGAGGCGCTGGACGAGGCACAGAAGACCGCGCAGGAAGCGCTGGACGCTCTGTAATCATCTGCAGGGGCGGAGGAATTTCCATATTCCTCCGCCCCTGATGGGATTTTGAAGCAAAATGAGTTATAATGGCAGATAGGAAGCTATATCTTAATACTGCTCTTCAGGCAGGCAAATGAGTACACCGTTCATTAAAATATAATTTTGAGACCCAACGGCAAACACTGTGTATAGTTTTCTTTCAGGTGCGAACCATAAGTGAACATAGAAGTACCGGGGGATTCGCACCTGAAATAGGGGAATACATGTTTGGAAAAAGGAAGAAGAAAAGTATGGGATATTGTATTTTTGTATGGAATTAACAAAAATCAAGTGGTAAAATAGAATTAGATTATGTATAATTGCT # Right flank : AATAAAGTTAACTTTTTATATAAAACCAGGAAAGAAATGGAGAACATGCAATGTACAGAGATCATACAAAAGTTGTTTCTATAGGGGACAGGGTTATCGGCGGCGGTAATCCTGTTCTTATACAGTCTATGACAAATACAAAAACAGAGGATGTGAAGGGAACAGTTGCCCAGATTCAGGCCCTCACGGCGGCTGGGTGTGAGATTGTCAGATGTACAGTTCCCACTATGGAGGCGGCTCTGGCGTTAAGAGAGATAAAAAAACAAATATCTGTCCCCCTAGTGGCGGATATTCATTTTGACTACCGGATGGCCATAGCGGCTATGGAGAACGGGGCGGATAAGATTAGGATTAACCCTGGGAACATTGGCAGCAGAGAGCGTATCAAGGCCGTGGTGGATGCAGCAAAGGAGAGAAATATTCCTATTCGCGTCGGGGTAAACAGCGGGTCCCTGGAAAAGGAACTGGTGGAGAGGTATCACGGGGTGACTGCAGAGGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTGCCTGCGAGGGCAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 103525-102699 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVI01000009.1 Lactonifactor longoviformis DSM 17459, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 103524 32 100.0 34 ................................ CCTTACCTTGTCTTTATCTACCACGGGGGGCTGA 103458 32 100.0 34 ................................ TCCGATTCCCATTCTAATAACATACTTTAGCTCA 103392 32 100.0 33 ................................ TAAATTGTCCAAACTGTGGTTGTCCTGTTGGTA 103327 32 100.0 33 ................................ TTAAATAATCCTCGAAAGCTCTTTCTTCCTTTG 103262 32 100.0 35 ................................ GCTCCCCCACCCTTAAACCCAGGTAAAAGTTTAGT 103195 32 100.0 35 ................................ CTACCGGGTCTAGGGATATGCACACTCCCAGCCCA 103128 32 100.0 34 ................................ AGCTACCCACTTACGCACCGTTTCCGGCTGGCAT 103062 32 100.0 35 ................................ CTTAACTGCCTCCGCCCATTTGACTAAAGCATCCA 102995 32 100.0 34 ................................ TTCTGTGCCCTGTATGATACGGAAATCTCCGGCT 102929 32 100.0 34 ................................ TCATCTATTTTATCCCCCTAAGAGGTGTAAGTTT 102863 32 100.0 34 ................................ ATAAGGGACTTCTGGGATTTCTGTACCGTCTTAT 102797 32 96.9 35 ...................C............ TGCATGGCAGGGGCTTTGGTAGGCCTCCCCATAAC 102730 32 71.9 0 ...G.........T.......CCAT....GTA | ========== ====== ====== ====== ================================ =================================== ================== 13 32 97.6 34 GTCACTCCCCATGCGGGAGTGTGGATTGAAAT # Left flank : TGAATACCCACCATTTTTTGGAAGTAAGAGAGGTTTTATATGCTTGTCTTGATTACATATGATGTCAATACAGAAACAAATGCAGGTAAGGCTCGTTTAAGAAAGGTAGCAAAACAGTGCATGAATTACGGAACTCGTGGGCAAAATTCAGTGTTTGAATGTATTTTGGATAACACCCAATGTGTTACATTAAAAGCAATCCTATCAGAAATTATTGATGAAAATGTAGACAGCCTGCGGTTTTATTATCTGGGGAATAATTTTAAAAACAAGGTTGAACACATGGGTGTGGAGCGCGGAATTGATGTTGTTGATACATTAATATTTTAGTGCGAATGTAAAGTGAACATAAAAATCCCGGGGGATTCGCACCTCAAAAAGCAAGAGAATGTATTATAAAAGTAGACAAAATGAATGGCAGATGATATGCTGAGAAGATAAAAGTGTAGAAAATGTATATATGTTTTGTTGTGAATACTGATGTTTTGTGCACTTTTGCA # Right flank : CTTTTTATTACGCCTGACAAATGGAAATCGGCAATTTTCCTGCCAGTGTGTAGTGGTATGCTCCGTTTACTGCCGGCTTCTGGGCTGTAGACTTTACAGATGGCAATGCAACTCTACTACTTTTTTAACTGCTTTATCTGCTTGATAGGGTAATCAGAGAAACTAAGGGAGAGAGGGCTTGTACTTAATTCATATATCCTAGATACACTAATTTACAGTTGAAGATAAAACGATAAAATGATAACATAGACAAGTAATATTTTCTCTTTCAAAAAGAGAAGCTAGGATTTTGCACCTCTATAGTTGGAGAAGTGACTCGCCAAATGCAAGAGCAAAGGCAATTGCCGGCGAATAGGAGTGGGTATTCCTTATTGACCAAAGGTCAATCCGCGCATTTATAGAAGTTTAGTCTTACGGTGCAAAAGTGACGAATTTGGAGTGAAGCAAGAGAAACGGCAGTTATCTTTAGAAAAAGAGGAGACAATGATACATAAAAATAT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCATGCGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //