Array 1 59638-59074 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEPI01000066.1 Neisseria lactamica NS19 contig00066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 59637 32 100.0 35 ................................ TTTTGGCAACCCTGCTGATGTGTTGCGCCGAAACA 59570 32 100.0 34 ................................ CATGAAAATATGTATTCCTTTCCGATTGCGGAGC 59504 32 100.0 34 ................................ GTGTACGCATCGGCAGGCGGCGCGGAAGACATTA 59438 32 100.0 33 ................................ ATGGCCAACCGCCTCATCATCGGCGGCAAAGAC 59373 32 100.0 36 ................................ TGTACTTAATAAAATTCATAATTACTTGGTTAATAA 59305 32 100.0 35 ................................ AGCATCAAATCATCCGCCGCGATCTGGTCGCAAAC 59238 32 100.0 35 ................................ AAACTCATTGCCGCCTCCCATTTTTGGGCGGTTGA 59171 32 100.0 34 ................................ CGACCGCAATGTCGCGTTCGGCCCGTCCGCTTAT 59105 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 100.0 35 TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GAGCGGCTGATGCCG # Right flank : GGCGAGGACGACATCCGCTTCCTGCGGGAACTGGGTTTGTAAACCCTTAAAAGACAATCCGATTTCCCTACGGCTTCAAACTCTGTCGGGCCGACGCAAAAATGCCGTCTGAACTTGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAAACGGCTTGATGTTATCTGCACATATTAATATAATGATAATTATTATTAATCAGACATGGAAAATAGTAGGGATGTGTAAACCGAATTATGGCGGCATCGCCTTATTGCCCTTACTTTTGGCATCTTGTATCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCGAACCAACGCCGACCGAGCAAACCCCGGCAGGTTCCAAACCTTCCAATCCTGCGGATAAGCCCGCTCCGGATTCTGCCAAACCTTCGATAGAAACCACGCCGGTCAATCAACCCGCCGTCGGTGCGGCAATGCGGCTGTTGAGACGGAATACTGCTTTTCATCGTGAAGATGGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 168-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEPI01000057.1 Neisseria lactamica NS19 contig00057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 167 32 100.0 33 ................................ TGCGCCCCAATCTTCGGCTATTTCGACATCAAC 102 32 100.0 36 ................................ ATGTTGAAATATTTTAAATATATTATCTATGCAGGG 34 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 100.0 35 TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GCATGGAGGGGCAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAGAATACCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTTGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACTTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTCAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGTTGGCGAATTTGGATTGTTCTTTAACAATCAGGATATTGCAAATGTGGGTATGGCGGATAAGGCTGTGCTATACTCATATTTGTGCTTTTTTCGGGAGTTTGGCGAAATCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGGAGCT # Right flank : CTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //