Array 1 53092-57184 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBED01000045.1 Arthrobacter oryzae strain TNB02 contig045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53092 29 100.0 32 ............................. ATCAGGATCCATAGACCCATCAGCGATCCGTG 53153 29 100.0 32 ............................. CATGAACGCCGCGCCGCCATACTCGGCTTCGC 53214 29 100.0 32 ............................. GTCTTTCAGGTGGGACCGTCGCAAGCTTTGCT 53275 29 100.0 32 ............................. ATATCCGTTGCCCGGATGCCGAACTCTTTGAG 53336 29 100.0 32 ............................. TTGGTGCGGTCGCCGTGTAGAAGGTGGCGTTC 53397 29 100.0 32 ............................. CGATGTTGTGGTGCTCCGTGGTGGTGGCCGTG 53458 29 100.0 32 ............................. GTTGTTTGCTGATGAGACGTGGGCGATTGGCC 53519 29 100.0 32 ............................. GGCTTTGAGATTGACGACTACTCCTACGACGT 53580 29 100.0 32 ............................. GTGGCTAAGGCCTCGTTGGAGGCCGCGCATCA 53641 29 100.0 32 ............................. GACGTGACGGTCACGGATTGCTACGCGACGGG 53702 29 100.0 32 ............................. GATCCAGCGGCGATCCTGAAGGCTTATCGAGA 53763 29 100.0 32 ............................. ATTGTGGACCGTGCAGCCAAGACAACGTTGAC 53824 29 100.0 32 ............................. ATTCCGCGTCTGGTTGTGTGCCGGATGGTGAA 53885 29 100.0 32 ............................. GACCAGACACCACCGGGCGACCAGTACCGGGC 53946 29 96.6 32 ............................T GAGTACGTGATCAGGGCGTCCGCCGCTAAGTC 54007 29 100.0 32 ............................. CAACGTGTGGACCCCCAGATTGTTGAGCTCAT 54068 29 100.0 32 ............................. TTGCTCTATCGGAAGTTCGATGCCGAGCGGGC 54129 29 100.0 32 ............................. AAAAACGGCCCGCACCACGACCCGTAACCGAA 54190 29 100.0 32 ............................. CTCGGGTATGACTGTCAATGGCGTGGCTTACG 54251 29 100.0 32 ............................. AGTTGAAGGCGTGCGGAAACGGTGTCGTCCCC 54312 29 100.0 32 ............................. CTGGGACGCGCGCGACACATCAATCTCCATCG 54373 29 100.0 32 ............................. AACCGATCGATGAGCCCGGCACGGAATCACCT 54434 29 100.0 32 ............................. ATGATGGATGCGTAGACGGGCCATGAGGTCGA 54495 29 100.0 32 ............................. GGGTCAAACCCTGTAACCCAGGGCATCTACAT 54556 29 100.0 32 ............................. TAACCACCCTCACGGCCCCGGACTGAACGTCC 54617 29 100.0 32 ............................. TCACTATTGGCGATCTTTTCCGCGAGCTGTTC 54678 29 100.0 32 ............................. AGTACGGAAGACGGGTATTTTGACCTCCATAT 54739 29 100.0 32 ............................. ATAAAAAACGAAGTCAAGCGGAAGTAAGGGTG 54800 29 100.0 32 ............................. AAGCCGAACGGCCCGACGCCCTCTCATGGGGC 54861 29 100.0 32 ............................. CTCAAAGCACACGGACTGATCGGAGCATAACG 54922 29 100.0 32 ............................. AGGTCGGTGCTGCCTTTGATCGTGCCGTAGCC 54983 29 100.0 32 ............................. GAAAAGGAATAGGCCTAGGACTTGTGCCAGGG 55044 29 100.0 32 ............................. GTGTTGCAGGTCATTATGGCCGGCTCAAACAT 55105 29 100.0 32 ............................. CAGCAGCATGAGGCGATGAACGCGCTCACTGG 55166 29 100.0 32 ............................. GTAATCTACTGCGATCCGCCCTATGAGGGAAC 55227 29 100.0 32 ............................. AGTGAGTAGCAGGATTGCGCCTAGTGTCCATG 55288 29 100.0 32 ............................. GAGAATGGCGGTTGAAAGTATATGTAGGAAGA 55349 29 100.0 32 ............................. TATTTGTTCGCTTGCATAGAGTGTTGCGGGTG 55410 29 100.0 32 ............................. AAAGTATTCATCCAGGAAGTCGTCAACGGGGC 55471 29 100.0 32 ............................. GTCGTAGAGGTCACCGCGGCGGGGCTGAAAGT 55532 29 100.0 32 ............................. TACCCTGTTCCGACCGGCACGAGGGTCCGGGC 55593 29 86.2 6 ....................CA..A...A GGTTCT TCA [55616] Deletion [55628] 55631 29 100.0 32 ............................. TTCTTCATCCGCAACCTGGTGGCGATCCTCGC 55692 29 96.6 32 ............................G ATAAGTTTTTCGCTCTTGCCTTCTTTGCTTGG 55753 29 100.0 32 ............................. ATTCAGGCGTCGCACCCGGTCGTCTGGTCCGC 55814 29 100.0 32 ............................. ATTCAGGCGTCGCACCCGGTCGTCTGGTCCGC 55875 29 100.0 32 ............................. ACGATGATCGACAAAATGGTCAACCAGCCCCG 55936 29 100.0 32 ............................. GAACACGCACGATGGACAGTTGTGTTGGGCTG 55997 29 100.0 32 ............................. GAACACGCACGATGGACAGTTGTGTTGGGCTG 56058 29 100.0 32 ............................. TTCGGAATGGATGACGGTTGTCCAGAGCCGTT 56119 29 100.0 32 ............................. AGGCCCAGCTCCTCTACACCCAGCACCTGTGG 56180 29 100.0 32 ............................. AAAACGTTCCAGACCCTCAACAAGGCAGCTGT 56241 29 100.0 32 ............................. TGGTCCGCTATCTCGCCAACAGTGTTCCCAGC 56302 29 100.0 32 ............................. CGGGAGCCCGGTCACCAGCGGCCGGGTGACGG 56363 29 100.0 32 ............................. TGCGGTGAAGAACTCTTCGTGCTCGGTCATTG 56424 29 100.0 32 ............................. GATCTGATGAACACTGAGGGCGGTCCTGACGT 56485 29 100.0 32 ............................. GACTTCACGTTCACCCCAACACACCAGATCTG 56546 29 100.0 32 ............................. AACGGCGTCTTTCACGCTGGATCCGTTGTTGA 56607 29 100.0 32 ............................. TGCTGGCGGGCTACCGAGACAAGGCTATTGCC 56668 29 100.0 32 ............................. GGACTGGGCCATAGTCGCGGCCCAAACGTTCG 56729 29 100.0 32 ............................. GGACTGGGCCATAGTCGCGGCCCAAACGTTCG 56790 29 100.0 32 ............................. CAATAGCTCACGCCGCGCAGGGTGCTGTTGAG 56851 29 100.0 32 ............................. AAGGAGACCGGCCTCTGGGTGGATGCTTGGGG 56912 29 100.0 32 ............................. CAACGCCCGCAGGGTAAACCATGTGAGGCTCC 56973 29 100.0 32 ............................. CCTTGGAACCACCCCGCACCTTGGAGGCGCAC 57034 29 100.0 32 ............................. TGGATGAACTGTTTGAGTTCGAGCATTTGTTC 57095 29 96.6 32 ..T.......................... GTGATTGAGGGGTCCTGCTTCCTGGCCGTGGC 57156 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 68 29 99.6 32 CTCTTCCCCGCGCCCGCGGGGGTATTTCC # Left flank : AAACTAAGAGAAACGATCCACAAGAAAAAAATCCTGGCAGGAATGCTCGACGCCCTCATGAGCGCCCTCTCGCCCCACCTCCCCGAACGCGACGACGACAGGATCATCGGCGAGGATACTGAAGTGAAAGGCCACGCGAACTACGGGGGCGACCAGTGATAGCCATAGTCATAACCCGCGCGGTCCCGGACCACCTGCGAGGCTACATCGGACGATTCCTCACAGAAATCGTCCCCGGCGTCTTTGTCGGGAGAACCAGCAGCACAGTGGCGGACCGCATCTGGGAACGCACCGCAACAGCCGTAGCCGACGGGGCCACGGCCATCGTCATCACCGACCCCTCGACCGAGCAGGGCTACAGATTCCGGACAGCCGGAACCAACCCGCCCCAAGTCACCGAACTCGATGGACTCCAACTCATCGCCAGGCAGATCGTGACCGAAACCGGGAACAAGAACGAAAATCTGGAAGAATCCAAGTAAAGTCGCAGCTCAGATAGT # Right flank : CCCTCAGACGCCGCAGCCATACGCCCAACTGGGTATGGCACTCTGAAATGGCCCCACTTGGGGGACTTTTAGCCGTTTGAAATGGCCCCACCCTCGACCCGCCCGTAGCGTTCTTTTTGTCCGCCAAGACGAAGAGAACGGAACGGGTTTGAAAGAGAGATCGAGAGTGAAGCAATTCGAGCGTATCCGCCTTGATGCGAGGGATAAAGATATGTCGGTCAGAGAGCTGGCACGGGTGCACGGCGTTCACCGCCGCACCGTCCGGGCCGCGCTGGAAGAGGCCATGCCGCCGGCACGGAAGACGCCCGTCCGGAAGGCTCCGAAGCTGGGGCCCTGGGAGGACACCATCCGGGCCTGGTTGATCGCCGACCAGAAAGCGCCGCGCAAACAGCGTCACACGGCCCGCCGGATCTGGCAGCGCCTGGTCGATGAACACGGCGCCGTGGTTGCCGAGTCCACGGTCGCTCACGGCGTGGCCAGGATCCGCCGCGAGCTCGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCCCGCGGGGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 59767-60217 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBED01000045.1 Arthrobacter oryzae strain TNB02 contig045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 59767 27 100.0 34 ........................... CCATGTTGTCGTGCCCGAACATGCTGGAGTAGGC 59828 27 96.3 34 ..........G................ CCATGTTGTCGTGCCCGAACATGCTGGAGTAGGC 59889 27 100.0 34 ........................... CCTACGAAGACCTACGGCTTCGGTGGCGACTGGT 59950 27 100.0 32 ........................... CCCAACCTGGGGCTGTCGGAGAGTTCGTATAA 60009 27 92.6 33 .C........................C GGAAGCGACGGACGGCTTCCATGCCGCGGGTGA 60069 27 88.9 34 .CT........A............... CCAGAGATGGTGGCACCGTTCGGGTCCGCCCAGC 60130 27 100.0 34 ........................... TCAGGATGCGTAGCTAATTTCAACTTTTCCGTAA 60191 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================== ================== 8 27 97.2 34 CTCTTCCCCGCGCCCGCGGGGGTATTT # Left flank : CACACCTGCTCATCGGCCTGGGCATGGCCGCCGCCGAGCAGGGACGGCGGGTCCGCTACATCACCACGGCGGCGCTGGTCAATGAACTCGTCGAGGCCGCCGACAACAAAGAGCTATCGAGGCTGGTGGGCAAATACGCGCGCCTGGATCTCCTTTGCCTCGATGAGGTCGGCTACGTCAAGCTCGATACCCACGGCGCCGAGCTTTTGTTCCAGATCATCACGGCCAGGGAAGAACGGGCGTCCATCGCCTGCGCAAGCAATGCGCCGTTCAGCGAGTGGGGCCAGACGTTCACCGACCCGCGCCTCGCGGCGGCGGTCGTGGACCGGCTGACCTTCCGCGGCCACATCATCAACACCGGCACCGATTCCTACCGGCTGAAAACCACCCAACAGACCATCAACAAGTCCCGGCAAAACTGACCGGAACACCAACAGAGTGGGGCCAAAACAAGCGGCGAACCCGGGGCCAAATCAACTTGCTATTCCCACCCAACAACC # Right flank : TCCTAAACCAACCGGGGCCGACTCATTGCCCGGAGGTCTTCACCGCGCCCGGGTCGTTTCATCCGTGCGCGGCAGATACCGGCTCGGCCGGCAGTGGCCAACTTTGATATCAAGAATGGCTAGAGCGATGGGGCGTGATTCGAGCGTCAGTTTGGGGTATACCCCAACATGACGTCAGGATGAAGGTTTGCAGTCGTGTCAGACTAGGGTGGGTTGCGCTATTTATTGACACATGCGGCCGCGGGTCTTAGGGTTCAGCCTGACACTCCTCACCTGGGAAGGAACCATGGCCGGGCAGCGGATCGGATACATCAGGGTCAGCACCCTGGACCAGAACACTCAGCGCCAGCTCGAGGGTGTTCCGCTGGAGCGGGTCTTCACGGACAAGGCCTCGGGTAAGGATGTCCGGCGCCCGCAGTTGGATGAGCTGCTGCGTTTCATCCGGGACGGCGACACCCTGGTGGTGCACAGCATGGACCGGTTGGCCCGGAACCTCGATG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCCCGCGGGGGTATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //