Array 1 1592-1015 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBVT01000025.1 Bifidobacterium leontopitheci strain LMG 31471 Contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1591 29 100.0 32 ............................. GATACGCAAAAGCCACCGGCTACCAGTCCACC 1530 29 100.0 32 ............................. GGACCTTGCCCATTGCCGACGATCTTGCCGAC 1469 28 96.6 32 ........-.................... TCGTCGCCCTGATGATGGCCGACCGGAAGACG 1409 29 100.0 32 ............................. CACGCCGGCCGGTACGAGTCGCGCCGAAACGG 1348 29 100.0 32 ............................. GGCGACGCCGAATGGACCCTCAGAGACATCGA 1287 29 100.0 32 ............................. ACGCTTGCAATGACGGCGGCGACGAACGCGAC 1226 29 100.0 32 ............................. CCGCCGGACTTCACGCCCGACAAGAGCGACCA 1165 29 100.0 32 ............................. TGCTCCGGCGTGCATGTCTCGATAAGCGAGGG 1104 29 96.6 32 ................T............ AAGGCGGGCGATTCCGCGCATGTGCAAGCATC 1043 29 89.7 0 ...........GC.A.............. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GACTCGCGTTTGAGCCGGGCGACCTCGCGGGTGACGGTCGACAGGGACACGTCCGCGCCGTACTCGTCGCGCAGGCGCTCATGGATGCGCGTCGCCGTGTGCCGCTGCTTATGCCATGTCTCCCGGTCCTCGGCGAGCATACCCTCGATCACGGGCGTCCACTCGTCGATCACCGACCCGCGGCGCTTCCTCACCGGGGGTTTGGCCGACAGGTCGTCGACCTTCAGGTACTTGCGCACGGTCGGCTCGCTGACGTTCTCGTTGCGCGCTATCGACGCGATGGGCTCGCCGTTCCTGCGACGCGTGCGGATAGACTGTATTTTGGGCATGCTGATCATTTGCCTTTCCGGACCTTTCCCGAATGGAATCGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCCAGACCCGAAAAAACTACGTGACTAAAACCTCAACTTCTAATTGAACAAAAACACCGGCATGGACGACCACGTGTTCCTCGA # Right flank : GGCGGCAGCGGGTGCGCCGCCTACTTGGAGAAGTCCGCTTCGCATAAGCGGGTATTATGTCAAAGCAGGTGACCGGAGCCCTTAAAAACCTCATCTCGCTTATTGGAGGAACCACCATGAACAGGCCATTCATCATCGGCGTCGTCTCGACGCTGTTCGGACTCGTTTCGCTCGGCGGGGCCATCTCGGGAAACGTTGTCACTGCCGGAGGCTTCGGTCTCGCAGCGGGGCTCATGGGGCTCGCTGCGGCCATTGCCGCCGACCGTGGGAACGCAGGTTCGGCTCCGCGTAAGCGGGGATGATTCCTATCAAGCTAAAGCGCAGGAGGTGATAATGACAAAGGAGAGACCGATGGATGACGACCTCAGCGAACTGATTGAACGGAAGCTTGACGAGCTGGAAGCCGTTCAACCTTCGGACGGGGATTATCTTGACCGCCAGACCCGCAGGGAGGCGTTGGAGACGATCGCGGAACTCGGCAACAGTCCTGAAGAGAGGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9295-4079 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBVT01000025.1 Bifidobacterium leontopitheci strain LMG 31471 Contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 9294 29 100.0 32 ............................. GGGGCCGACCTCCATTCACGCCATGCGTGGGC 9233 29 100.0 32 ............................. GGTGGGCATGGGTCCGAGCGCCGATGCGGTTG 9172 29 100.0 32 ............................. ACGTCGGATTGGATGTGGTACAAGGCGCAGGC 9111 29 100.0 32 ............................. GTGATCTTCGGCCTGACCTGGCCGCAGGTGGC 9050 29 100.0 32 ............................. TCGCTGACCCAGGTGATGCAGATGGAGACCCG 8989 29 100.0 32 ............................. GGGACGATTCGGTTTTGTATCTTGCTTATTTT 8928 29 100.0 32 ............................. TGGCCCACGACCCCCTGCAACGGGATCAGCAG 8867 29 100.0 32 ............................. TTCAGGTGCCAGCCGCGGGCGCGCGCCCGGAA 8806 29 100.0 32 ............................. CATCCAGACGGGTCCGAACAGTCAGCCGCGCA 8745 29 100.0 32 ............................. TGGCCGATGAGGTCCGCCAAGCGTGGCGTCTC 8684 29 100.0 32 ............................. AGTGACACTTTGCTGTCCTCCATGTGGCATCT 8623 29 100.0 32 ............................. GCCCAACTGGCGAGCAGTGCACCGTCATCGGC 8562 29 100.0 32 ............................. ACCTATGCGATGACGCGCGTCACCCGACGCAA 8501 29 100.0 32 ............................. CTGCCGGAACTGTCCATCGTCATCGACATCAG 8440 29 100.0 32 ............................. CGCTCGGCAAGGCCATGGGCGGCGCCGGCGGC 8379 29 100.0 32 ............................. CAGTCGCGTGGCACGCTGCCGATTCTGAAGTG 8318 29 100.0 32 ............................. GTCTGTATCTGTGGCGTTTCCAGCCCGGCGCG 8257 29 100.0 32 ............................. CAAAACCGGCAACGCCAACCGGCAGATACCCC 8196 29 100.0 32 ............................. GGCACGGAGTCGCTGGAATCGTTTTCGGTGAG 8135 29 100.0 32 ............................. GTATCGGCCTTCGTCATCTACTGCGTCGAAAC 8074 29 100.0 32 ............................. GTGGACGCGAATTTTTGCGCGGAGTCGGACGC 8013 29 100.0 32 ............................. CGTGACAGTGTATTGACCCGCCGTCGTGCTCT 7952 29 100.0 32 ............................. TGGAGATGATAGGCAGACGTTGGAATTACGAG 7891 29 100.0 32 ............................. AATATGGCGCGTGTCTGAGTCGTATACCGGTT 7830 29 100.0 32 ............................. GATGCCTTGAATCACCTGCGTTACCGACGTGA 7769 29 100.0 34 ............................. CCGCTCGCCAACATGATCGCATGGGCCGGCCTGC 7706 29 100.0 32 ............................. TATTCGGCGTATCAGTGCCGACGATCAGCGAG 7645 29 100.0 32 ............................. ACAACACCATCAAGGCAGAGCCGAGAGCAGTC 7584 29 100.0 32 ............................. TGCCTCGGCCGAAAACAGTCACACGCCGATAC 7523 29 100.0 32 ............................. AAGGGCACCGAGCGCGATAATGAGCAAGACGG 7462 29 100.0 32 ............................. TTCGCCAAAGAGGCCGACACCGCACAGGGGCA 7401 29 100.0 32 ............................. GCCTACAGGCCCGAAGGCTGAACATGAAGGAC 7340 29 100.0 32 ............................. GGCCGACCGACGGCGCGCTTGTGTCACGCTTC 7279 29 100.0 32 ............................. GCGCTAGTCGATAACGCGCTCCGTACGCTGTT 7218 29 100.0 32 ............................. TGCGTAATCAACGGCATGATGGACGTCAACGC 7157 29 100.0 32 ............................. CAACCAGGACGCGCCGGACCATCTTCGAGGCG 7096 29 100.0 32 ............................. GGGTGAGACTACTGACGGTCTTTCGTGTGATA 7035 29 100.0 32 ............................. GCGAAAATGTGCGCGACGCGCAATGATTGCTT 6974 29 100.0 32 ............................. GCGAGCGTCAGGGCGACGGTCACGCCCTCGGG 6913 29 100.0 32 ............................. ACGTATATATACACGCGCCGCCGATCATGCGG 6852 29 100.0 32 ............................. GCGGCCACGGTCGGGTCGCTTGAAGCCCATGT 6791 29 100.0 32 ............................. CTATGGGCGCGAGCCTACCCGTACGCCGTGCA 6730 29 100.0 32 ............................. TGCCGCCTCCCGTGGGCGTGCATTTCAGCACC 6669 29 100.0 32 ............................. CGCACCGACTCGCTGGCACTGCGATGCTCCAA 6608 29 100.0 32 ............................. TGGACGCGTCGGTTATCGCGCTCCTGTCCGTA 6547 29 100.0 32 ............................. CGTGATTCCCGTCGTTTGCCGCGCGTCACATG 6486 29 100.0 32 ............................. GGTAACGGGTCGCTCGATCACGTGGGTATCGT 6425 29 100.0 32 ............................. GGCGGTCAATTGGTAGCGGGGCATGGATTTGA 6364 29 100.0 32 ............................. GCTACAGCACCAAATGGGTCGTCGACGACATC 6303 29 100.0 32 ............................. AGGGTCGTGGGCCGGAATGGCGCATGCTGGAG 6242 29 100.0 32 ............................. CAGGTCAAGCGTGCGAAGCTCCACCTCTCGAC 6181 29 100.0 32 ............................. CAACAGGGCCTCCGGCCGGCTACTCCGGCTTT 6120 29 100.0 32 ............................. CCCAGCCAAGAGCCTGGAACGCGCCTTGGATG 6059 29 100.0 32 ............................. CACATTGTGCGAGGCGTGCGAAATGAGGTTCT 5998 29 100.0 32 ............................. GTGTCGAAAACGCCTTTTATGGCAGACAGGAC 5937 29 100.0 32 ............................. GGGTTAACGGTTGACGGTGCCATAGGAGTAGT 5876 29 100.0 32 ............................. CTGTCTGCGGTCAGCGTCATCGACGAGCTGCG 5815 29 100.0 32 ............................. TGACGACCCGCCGCAAGCAATACTGTCTCTCG 5754 29 100.0 32 ............................. GATATCCGTATCCCGCAGGGTATCGTGACCGC 5693 29 100.0 32 ............................. CAGACGGACTTCTGGTATCCGAACCTGCCGGA 5632 29 100.0 32 ............................. GTCCATTCCCGCGCGGTCAACTCTGCAAACAG 5571 29 100.0 32 ............................. CTCCAATAGTGTCAACGGGGCGCATTCGATGG 5510 29 100.0 32 ............................. GCGGGGCACCCACCCCACACGGCCGATATACC 5449 29 100.0 32 ............................. CGTCTTAGGGTGATGGGCCAGTGCCGATTCCT 5388 29 100.0 32 ............................. CGCACGGCAAAACCGTGCACGGCATGGAAACG 5327 29 100.0 32 ............................. GCGCAGCTGGTCGAATCGTTGTGTGCGGGGCA 5266 29 100.0 32 ............................. GGTTTGCGGGTCACGTTCGCGCCGGTGACCTC 5205 29 100.0 32 ............................. GATCATCAAGGCGGATTAGATGGGATACGCGG 5144 29 100.0 32 ............................. GCGGGGGGTCTCCCCACACGGCCGATATACCC 5083 29 100.0 32 ............................. CACCTAGCCGCGTGGCCGGGACGTTTCGCCAT 5022 29 96.6 32 .......T..................... TGGGACACGGTGAAGAAGGCCGGTGCCGCCGC 4961 29 100.0 32 ............................. CCACATGCCGAACTCGAAACGGTAGAACGTGG 4900 29 100.0 32 ............................. CCACATGCCGAACTCGAAACGGTAGAACGTGG 4839 29 100.0 32 ............................. GGGTCTATGCTCTCCTACAACGGCGGAACGGC 4778 29 100.0 32 ............................. ATGGTGGGTGCGAGCGGCCCGTGCCCCTGGTT 4717 29 100.0 32 ............................. GGTACGTGGCGCCGCCGCCGGACGCCATGCGC 4656 29 100.0 32 ............................. CGTGCGACCCCGGCGACCTTCAGTCTCGCGGA 4595 29 100.0 32 ............................. CGGCTTGTCGAACACGGGATTCGGCCACTTAT 4534 29 100.0 32 ............................. ATCGAACAGTCATGGATAGAGTTCGCCGACTA 4473 29 100.0 32 ............................. TGCGCGTGGACGCACGACATGAGATCGGCCGA 4412 29 100.0 32 ............................. ATCGAACAGTCATGGATAGAGTTCGCCGACTA 4351 29 100.0 32 ............................. CGACTCGAACGCGAACAGTCGGATGTACACGT 4290 29 100.0 32 ............................. TGCGCGTGGACGCACGACATGAGATCGGCCGA 4229 29 100.0 32 ............................. TGAAACGGATCGCCGCCACGCTCACCGACCCG 4168 29 100.0 32 ............................. CAACAAGGACACGGGACGTGGCCCGACGCTTG 4107 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 86 29 100.0 32 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : ACTGCAAGAAAGGTCGTATGCGATGGTAGTGATAGTGCTGACCGCCTGCCCTGTCGGACTTCGTGGCGATTTGACGCGGTGGCTGCTTGAAATATCGGCGGGTGTCTTCGTCGGCCATGTCAGTGCCAGGGTTCGTGACCGGCTGTGGAAACGAGTCATTGAGTTAGTTCGGGACGGTCGAGCAATTATGGTGTATTCCGCACGTAATGAACAGCATCTCGCGTTCCGGATACACCATGCTGATTGGGTGCCAGTGGATTGTGATGGTCTGGAGCTTATCAAACGTCCTAAAGGTTTTAAAGCAAAGAAGGATTCCGAATCCGATTCTCGTCATCCGGGCTGGAGCAATGCCAGCAAATGGCGGATGGCGAATAAACGTCGATGACGGTTGTGGCTTTCGTGATAATGTGTCCCGCTCCGTCTTGATTGGTGTTAGCAAAGTGAATGAAAATGAGACGGTTCACTTTCGATATCCCCTGGAATCTCTATGATGACGAAGT # Right flank : AAGACCGGCTGTATTTTGTCAAGTTGGTGTTTCGGTTTTCGTCACTGTTTTTTTTCGGGTTTCGGCATGAAGGGTGCCGGCCGGTGGTTGGTTGTGGTTATCGGTCGTTGGTTTCCTTGCCGAACATGAGGGCCTGGCCGGCTCGTCGGCTGGGGCCGGTGAACTCGATGAGGCGTCCGTGGTGGACGATGCGGTCGATGATCGCGGCGGCGAGTTTGTCGTCGGCGAAGACCGTGCCCCATTTGCCGGATTCGATGTTCGTGGCGGAGATGATGCTGCGCCGCTCGTAGCTTCCGGCGACGGTCTGGTAGAGGAGCCTGGCGCCGTCGAGGCGCGCGGGCGCGTGGCCGGACTCGTCGATGACGGTCAGGTCGGCTCTGGCGAGGTCCTTGAGCAGGCTGTCGAGGGTGCCGTCGCGTTTGGCCTTGCCGAGCTGGAGGACGAGTTCGGCGGTCTGGCGGAAGCGCACGCTCCTGCCCGTCTCGACGGCCTTCATGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5122-5861 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBVT01000046.1 Bifidobacterium leontopitheci strain LMG 31471 Contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 5122 36 100.0 28 .................................... ACGCCGGGTTTGGTGTCGGAGTGTCACG 5186 36 100.0 28 .................................... AACGCCGCCGGATCCACAAGCCTGAACG 5250 36 100.0 28 .................................... GTTGAGGGGCGGTGGCGACGCCGGTAGG 5314 36 100.0 28 .................................... ACTATCCGGGATGCGTCGCCTGAAGTTC 5378 36 97.2 28 ..............................T..... TCAACGGTGTTGGCGTTTATTCCAGTGG 5442 36 100.0 28 .................................... AATTTACCAACAACCAATCGGTTGTGTC 5506 36 100.0 28 .................................... TGATCGGTCGGCGGCGCGCGATTTATCG 5570 36 100.0 28 .................................... CCAACGGCAATGTTCGCGCGGTATGCGC 5634 36 100.0 28 .................................... GATCATGGGCGGAGCCGGCGCTGTCACT 5698 36 100.0 28 .................................... TAGCAAGCTAGCGGGACCGGTGGAACGT 5762 36 100.0 28 .................................... TGCGTATATATGGGCGTACGCGCGTCGT 5826 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 12 36 99.8 28 CAAGCTTATCAAGAGGGGTGAATGCTAATTCCCAAC # Left flank : GCTAAATGGCACGGGGTTGACCATTCCCAGTTCGCTGAACGATTTTGCGCAGCAATATGGTTTGTATTGCGAAAGCCGTATTGATCGTCTGACCGTGCCGGAATATACAGGCTGTCTATGAAAACCGACGAGGATAGTGGCGGCATGTGGTGCTTGGTGATGTTCGATCTTCCGGTCAAAACCAAGCAGCAACGCAGCGTCGCCACCAAATTCCGAAACATGCTGCTGGATATGGGATACAGCATGGTGCAATACTCGGTGTATGCCAGATACACGCCCACGCAGGCGGGTAATCGGGCGACGGTGAAGGCCATCAAAGCCGCATTGCCGGTTCAAGGATATGTGCGGATTCTTCACATTAGCGACCACCAATGGTCGTCGGCACTCAGATTTGCGAATCTGAGACAGGAAGATGAGATGGAAACGCCTGACATGTTCACGCTTTTTTGAATGTAGAAAGGCACTGAAACAGCTAAAAATGGCCCCTCTTGAGAAGCTAT # Right flank : CTTTCGGCGAGCGCCATGCGTGCGAGCCGCAAGCTTTCAATAGGGGCGAGGATGTCAATTCCGGTCTACGATGCGATTGATGGGTATGACGCTCCCCCAGTCGGCTTCGCCGACAGCCCCCTCCACCGAGGGGGCCAGGAGGGATGATAGTGACGTCACCATGTTTGTATGTAGCCCTTCCACTCAGGAGCTAAGAGTGGAATAGCCGGCTTCGTTGTCGGTTTTCCGCAATTATGAATGGTCTTCGGTCTGTTCGTCTGGTAATCGTAACGAATGCATGACGGGTGCAGCGTATGAGCCGTGCATGTCTGAAGCCATATTCACGTGTCCACTATCTGGATGAGGCGCTGTACGGTTCAGGTCGTGTGCTACTGTGTCAATCATGATGTTTATCTCATGTTGTTGTTGTCGATAACCGACGCCGCCCCACGTTTGGGCATAAGGCGAGCGGTTGACGACGCATAACTTGAGATAAGGTTTCTTTTTCTGTTTCTCTATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAGGGGTGAATGCTAATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //