Array 1 39901-37733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOZ01000059.1 Methanosarcina sp. 2.H.T.1A.8 scaffold26_1_size51518-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 39900 30 100.0 40 .............................. TGTTTATATAGGGCCCGGCAATTGAGGATGTATCAGAAGA 39830 30 100.0 39 .............................. TCCGACAGAGCAGGGAGGGTGACAGAAAATTCAATACTG 39761 30 100.0 37 .............................. ACGTCTACTCCTACAGTGGTATCTTCAGTGAAAGGTT 39694 30 100.0 35 .............................. ATGATATAGTCAAAATAGAGAAGATCACAAAAACT 39629 30 100.0 36 .............................. GACGCATTAGACAATATTACGTCATTGATCCTTGAT 39563 30 100.0 37 .............................. ATGTTGTATATTCATTCAGTAATGTATATGCGGATTT 39496 30 100.0 36 .............................. GTTGTAAAACTTGTAAGCGCTTACTTACAAGTTTCA 39430 30 100.0 36 .............................. AACCTAATTCTTTGATACAGTTCAAAATCAAATTTA 39364 30 100.0 37 .............................. AGCCTCTTTGTAGCTCTCGATTTTGTATCCAAATCAG 39297 30 100.0 37 .............................. AAGCCTACTCGGTATAGTCAGTTAATCGCTATTCAGT 39230 30 100.0 35 .............................. ATAACCACGACACGTCTACATATGACGAGAGCATC 39165 30 96.7 40 ...........................T.. TTTTTTATAGAGTGATTCATCTATCTATGCGCTCCATCTC 39095 30 100.0 35 .............................. ACAGGCACAGACATTGACCCATTCAGACCAGATTG 39030 30 100.0 37 .............................. ATTGACGTGGAAGAAAAAAGAGACGACGAAGAAGATG 38963 30 100.0 36 .............................. TTCCTCTACCCCATGCCTATACGCTTCATATGCTGC 38897 30 100.0 37 .............................. ATTAAAGACCCCTCGCTCTATTAAAAAACGGTTAATC 38830 30 100.0 38 .............................. ATTTCCATTATAGAAGTTATCAATAGCTTTTATCCCTT 38762 30 100.0 37 .............................. AAAGCAGCTTTAGATGCAATCAAAAACGCCATTCCAG 38695 30 100.0 35 .............................. GAGCCTGATTTCTGCCTGCGTTGGTTGCGCCTCTG 38630 30 100.0 40 .............................. TTATGTGCCAATCTTCCCCGGACACTTTTTCCATATCTGA 38560 30 100.0 34 .............................. CTCCTAAAAAGCATGTTGAATTGAACCTTAAAAA 38496 30 100.0 35 .............................. GAGCTATGCAATACAGTACCCTACCTACCAAATCC 38431 30 100.0 40 .............................. GGGCTCCTATTTCGTCAACTGCAAAAAGAAGCGGAATATT 38361 30 100.0 38 .............................. GTAGAATCCAACCATATTGATCTTAATCCTGTATTCGC 38293 30 100.0 38 .............................. ACCTTCTTTATCAGCACATAACCAAGAACGGCTATAGC 38225 30 100.0 36 .............................. AGATTGATCAGAGCATAAGTGTCCTCGCCGTTGGAT 38159 30 100.0 36 .............................. GGATATCTGCAAGCTCTTCGTTAAGGTCAGCAGAGC 38093 30 100.0 36 .............................. AATTGAGACACATGGAGGAATCAAAATAGAAGAATA 38027 30 100.0 37 .............................. CTGATAGCTCCGTATAAGGTGGAGAGGGAGGGGGTTT 37960 30 100.0 36 .............................. ATTCGTTTAAATATTCCGAGAGGTTGCAGGCAGAGG 37894 30 100.0 37 .............................. ATTTAATATTGAATAATAAAATGGGGTCCGTTATAGC 37827 30 90.0 36 A.........T..........A........ CTATTCCGAAATGTTTATTATGTCCCTATAAAATTT 37761 29 80.0 0 ...........CT........TC..-..T. | ========== ====== ====== ====== ============================== ======================================== ================== 33 30 99.0 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : CTGAACTGGGTTCAAAATAGTGTTTTTGAAGGTGAACTTACAAAAGCCGAATTCCTGAAAATTAAGTCAAGGCTTAAGGAACTAATTGAAGAAAGCCATGATCACATTATCTTCTACAGTTCCAGAGATAAAAAATACCTTGGAATAGAAAATCTCGGAACTCCAAAAGCAGATACAAGCAACATAATTTGATCTGCCACATCTGTGTATTTCACTACTTAAGCTTTCACGCAAGATCCAACACTTTATTTATATATTTATTATAACTCCACTGTCTGTAGATTCGGGTTCTTTTCTTTTTTCGTGGATCTTTATAAATGAAACGCCAGAAGAACGATCCCCGAGAATTCCTCTTGAATCTCCATTAAGAAAAGAATACTTTTATATTGTACAGCACCAAATACAATTGCCTAAAAACAGCATCATAAACCCGAATTATTCAGCTACCATTTGAAAGGATCCTGCATCTAATTTGCCTAAATTCGGGGAAAATTTCCTTG # Right flank : CTTCAATTCACATTTAATCTTTTCTATTTAATGAAAAAGAAAAGTTACTTATTTGAATACCTTTCTCTATTTTGAAATATTATTATTTTGTGAAAGTGAAGATTTCTGGAAATGGAAGTAACAATAATGAGCCAGGGTTTTCTTTATACGTTTACTGGGAATCCTTTTGTGGATGCTGGTATATGGGCTATATGCGAGTGGTCGGGTAGAAAAAAGCCTGAAGAAATTACAGTGGAGGATCTCAGAGAAATTAAACAAGATGTGATCTCTGTATATTTAAGTCCGGAATGGGCAAAGAGCCTTTATTCTGTTTTTCCGAATAACGCGGTTACTAATCCCTCTGTGAAAAATAAGGATAAACGATTACTTGAATTTTTAGAGCAGCTAATTGGTCAGGTTGAATCTCAGGGAGGGTTAGGAGAGTTCGGTAACTGCATCTCTTGTGGGAGATATGATGTTGAGGACGTTAGGACAAAAACAGAAATTCCCCTCATAGGTTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 13405-18347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOZ01000058.1 Methanosarcina sp. 2.H.T.1A.8 scaffold39_1_size28955-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================== ================== 13405 37 100.0 37 ..................................... ATTGTCTCTCTATATTATACATTAATGATATATATTT 13479 37 100.0 37 ..................................... TCTGTATGTAGAAAGCATCAGGGACGGAGAGGTGAGA 13553 37 100.0 38 ..................................... ATAAAGACTTTGACTCCATACATAATAAAAATAATCAC 13628 37 100.0 37 ..................................... AGAGTAACGAACTCATCAGAGGGTCACAGGTTCGAAT 13702 37 100.0 36 ..................................... ATTTGTCTTTGAGTTTCCTGCTTGCGGAAATCACAG 13775 37 100.0 36 ..................................... TAATGCCGGGGTCGGTAGCTTGCCTTGCAAAATTGG 13848 37 100.0 34 ..................................... TTGGAAACGGGACTGTAACAAGTGGAGCTATTAA 13919 37 100.0 36 ..................................... CGATGGAATTTCTTGAAGAACTATATAGAGATAGCA 13992 37 100.0 37 ..................................... AAATACAATTTATCGCGCTCTTGATACATTCCATACT 14066 37 100.0 36 ..................................... TTATTTCTAATATTTCTTTTGTAGATTCAAAAGAGC 14139 37 100.0 53 ..................................... ATTTGTCTTTGAGTTTCCTGCTTGCGGAAATCACAGATTCGCGAGCAAGATCN 14229 37 45.9 34 NNNNNNNNNNNNNNNNNNNN................. TTGGAAACGGGACTGTAACAAGTGGAGCTATTAA 14300 37 100.0 38 ..................................... CCTGTGACTTTTCCAGATCTTTTTTCTTATCCAGCTTT 14375 37 100.0 33 ..................................... ACTGTAGTGTAGATAACAAACTATAAATAACAT 14445 37 100.0 37 ..................................... AGGATTGATGAACATGACTGGAAAAATAAAAATCACA 14519 37 100.0 34 ..................................... CAAACGACACCCTGGGATAATCCGCCATTGAACC 14590 37 100.0 37 ..................................... ATTAAGATCATCTCCTTTTAGAAGTCCGTTTCTTCGC 14664 37 100.0 36 ..................................... CCGAGTTAGTGAGGACTTATAATATTGACAGAAAAG 14737 37 100.0 36 ..................................... TCAGACTTGTACTTAGAATAGGCATCGGTGAATTTG 14810 37 100.0 35 ..................................... TATCCCAGTTCAAGAGCCTTTTTGATTTCCGGGAA 14882 37 100.0 34 ..................................... CGGTCTGTTTGCTTGTTATTGCCATAAATGAGAT 14953 37 100.0 35 ..................................... ATCTTACCATTGAATGTTTCTACACTTTCCGCTAC 15025 37 100.0 35 ..................................... CGCTTTTGTCACATAAATCATATTTGTCGGATAGT 15097 37 100.0 35 ..................................... GTATGTATATTAAATTGTATATGTTATGTTATCTA 15169 37 100.0 36 ..................................... ACACTACGGACAAAAGAGGACTTTGACATCAGAAGC 15242 37 100.0 35 ..................................... CTCGCATACACCATATATATCATGTTATCTCTCAT 15314 37 100.0 36 ..................................... TTTCTTACAGGGAAATATCTTGATGGATTGGATAAT 15387 37 100.0 37 ..................................... ATGCCTTGTGTGTGTGGCGAAAAACGAGAACTCGAAA 15461 37 100.0 37 ..................................... AACAACAGGATCAGCCCAGGAAGGAAAAGCCCAGGAA 15535 37 100.0 34 ..................................... GGATCATAAGTTGCCTGCTTTCCAGAGATCCACA 15606 37 100.0 37 ..................................... AACCCATGCCTCTCACCTAGCATCCGAGTATGAACCG 15680 37 100.0 35 ..................................... ATCCACATCTCTTTTCTTCTGTTTTTTCTTACTCT 15752 37 100.0 34 ..................................... TCTTTGCTTTCATAATCAGGCCTACTATGACACT 15823 37 100.0 36 ..................................... CCATTTTGTCCTCAATCCTTTCAGGGGGATTCCCAT 15896 37 100.0 36 ..................................... CATCTCCTGTAATCTTGCTTCGTTCACAATCCTTCT 15969 37 100.0 36 ..................................... TCACAGGACAAACTTCTGAATTCGGATGGCAGCCTG 16042 37 100.0 35 ..................................... CCTCTAAGAAGTTTGAAGTAATGGAGTATAGAGTC 16114 37 100.0 35 ..................................... CATTGAGTACAACCCATTGCCCATTCACGGGGGAT 16186 37 100.0 37 ..................................... AATGGGAGTTGAATTTTAATGAATATTGAAAAGAGTT 16260 37 100.0 35 ..................................... TTAGGAATTTGCCACTGACGGACTTTCACCGGAGG 16332 37 100.0 33 ..................................... TTTTTCCTGTCATGTTTATCAATCCCTAAAAAT 16402 37 100.0 45 ..................................... TTCTCTCGATGGTCCCCTTGTAAAACATGTAGGATACACGGATTC 16484 37 100.0 36 ..................................... AATAAAAAAGGGAAAATCCTTCTCGAAAACACCGGA 16557 37 100.0 35 ..................................... TTAATTATTCAAAACTATTCAAATTTGATATAATA 16629 37 100.0 34 ..................................... ATTTTTTGTATCGGTATATCAGGACGGGGGATTA 16700 37 100.0 34 ..................................... ATCCTCATCATTTCCATCACTGGAAAAGAGTTAG 16771 37 100.0 33 ..................................... AATTACAATCAACCGGCAGGAAATTATCATCAT 16841 37 100.0 37 ..................................... CCTAGTGGTGCGGCTTCTTCCTCTTATTCTTCGGGGG 16915 37 100.0 37 ..................................... AACAAACTCCATCTGTATACATCACTAATCACCAATT 16989 37 100.0 35 ..................................... GACATAGGGGTGACTATGTATGGACTTAACGGATA 17061 37 100.0 37 ..................................... AAAGAATAAACGGGGGATTATAAATGGAATGTATATA 17135 37 100.0 35 ..................................... ATGCTGGTGTGTCCCTGCTGCTACAGTACCGAATT 17207 37 100.0 37 ..................................... GGACCTGTTTGGCTCCTATCATGTACTTCCCGAGAAG 17281 37 100.0 35 ..................................... TGTTCAGATCAATTCTTGCAAAATCAATTGCTTGT 17353 37 100.0 39 ..................................... TACATTGAAAAGAACCCACTTCTCCAACCGTACACCGTG 17429 37 100.0 34 ..................................... TAGTGATGTTTGCAATCTCTGTAAACATTTCAAC 17500 37 100.0 34 ..................................... TTGGTCGAGGGTTTTGCAGTCACTCCACCATACA 17571 37 100.0 38 ..................................... TTCGGACCAAAACGCTTGACTCGTACGGCGTTCTCATT 17646 37 100.0 37 ..................................... CGGCTCGATGAAATGGAGTGCAGACGACACATACGCA 17720 37 100.0 38 ..................................... AACAACATGGTACGCAAAACCGCCAACACGCTTAAAAA 17795 37 100.0 38 ..................................... TCAAGAAGCAGTATAACGGGCGAATCTATACTATGATC 17870 37 100.0 36 ..................................... CACCTGTAAAACCATCTTAAATGAACATAGACCAGT 17943 37 100.0 39 ..................................... TGACAATAACCACGAAGGGAACCCCGTTCGATGAAGACG 18019 37 100.0 38 ..................................... TCTAGGGTTATGAAGCCTTCGCCTTCAAAATCGCCATA 18094 37 100.0 38 ..................................... ATTGCTAAGAGCCAAGACAAAAACATACAAAATTGAAT 18169 37 100.0 34 ..................................... TAAGACCCTAAGGTTTTACCAAGCCTTCTATAAA 18240 37 100.0 34 ..................................... CTGAATTTGATGGGGTAGGCGGCAGTTCAATCTC 18311 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================================== ================== 68 37 99.2 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CTGGAATCGTTATTTCTATTGAAGCACACATAGTTACAGATATAATATACACTAAAGCAAAAAGAAAATCCACTAAAATAAAAAAGAAACTAAAAAATATTCGCACCACCAAATCATAAATTTCTACATTTTATTTTCTACATTTTATTTTCTACATTTTATTTTCTACATTCTATTTTTTAGATTATATTTTTTAGTCAGTTTTTATAGAATGCCATGTCAGGCGGTTGTCGATGGGATATAATGTTTACTCTTTTACTCTTTTTTATTCTTATAGTAGGGCTTTGCGTTAGGTTGATCATTGATTGTTAACATGAGCCGATAATTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTCCAGATGTTTCCAAACCATCAAAAACCCTGATTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAATGGGCTCATTTCAAGCCTTTTCTGGCCAAACGCCGGAAATTTTTGCCCT # Right flank : CTTCGGTGGAAACTGGATAAAAAACATTCATTCTTTGTCGAGAAGTAGCTCCAACTAATACAAGAACCAAGTTTCCACCCAAACTCACCAAAACCAAAAACCTAAAATAACCCCAGAAGTTATTCTCTAACAGGGAGAATAGCCATGACCAGCGAAACCGAAACTCCGGAATGTTGCCCTCCGTTTGATCCCGCCCCCTGGGATGGAAAAGTCTTTGATTGGAACAATAAAAGGTTCATCAGGGATTCCGTTACCACACAGAATTACATGCCCCTGAACTTCGGGGAAGTAATAATGAGGATGAACGAGAAAGTTGCCAGGGCTGGTGCGGAAATGCCTGACTGGCTCTGCCTGTCGGACCATACCTCTGAAAGCAATATGGACCTCTATCTGGCTGTTGACAGAGAGGTCGATGGGGCTGAAAATGTGACCCTGAGCGGGAAGTTTTTGAGCAAAGTGTATGAAGGGAATTTCGAAAAAACAGGAGAATGGTGCGGGGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA //