Array 1 1169039-1167947 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHHR01000001.1 Streptococcus equinus strain NCTC10386, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1169038 36 100.0 30 .................................... ACGTGAGACGGCAATGCGAGCATTCAGAAA 1168972 36 100.0 30 .................................... AGGTAAATGTAAGTCAGTAGAAGTCGAGAA 1168906 36 100.0 29 .................................... CTCAACATAAAAGACACCTGTCAATTGAG 1168841 36 100.0 30 .................................... TTATGATAACGGCATCGTGGTAAGGTGCGG 1168775 36 100.0 30 .................................... ACGTGAGACGGCAATGCGAGCATTCAGAAA 1168709 36 97.2 30 .........G.......................... AGGTAAATGTAAGTCAGTAGAAGTCGAGAA 1168643 36 100.0 29 .................................... CTCAACATAAAAGACACCTGTCAATTGAG 1168578 36 100.0 30 .................................... TAATGATAAAGAACCCTTAACAATCCATGC 1168512 36 100.0 30 .................................... TTGTGTATCTAATAAAAAGTCTGGCTTGTA 1168446 36 100.0 30 .................................... AGTGAGTAAGTGAAAGAATGGTACTTGGTC 1168380 36 100.0 30 .................................... AAACGGGTCGATATGTTGTTGGGATACGGT 1168314 36 100.0 31 .................................... CAATAATAAATTTGAACTACTTATCCCAAAA 1168247 36 100.0 30 .................................... TTCTTATACCAATAGCCCTCTTGATAAGAC 1168181 36 100.0 30 .................................... AAATGTGTTTGAACCTAAACGTTTAATTTT 1168115 36 100.0 31 .................................... TAAACTCTATGTCATTTTGTTTTAACATCAA 1168048 36 100.0 30 .................................... AACATATTTTAATGAGGTCGCCAATAAAAT 1167982 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 99.8 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAACTTTTTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTGCTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCATTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCCCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCTCTTTGGTTTGGGGAATAAAATAATTAAATAAGGAATCATTTGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGGAAAAATGGTCCACGAG # Right flank : TTGTGGCTACTAAATATGAATATACCAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATATGGGTCATAGGTTTGCTAGGTTAGATTGGCTTAGTCGTTCAAGTGGTCTATGGCATACTGAGCTTCTTCGGCGGTGAATTTTGCGCCGTGTTCAGAAGTGAGTTGTTCGTAGATTTCATCTGATGACAAGTCTAGTGTTTTTTTATAACTTTTTGCTTTTTCCAAGGCAGCTTTTTTATAGTCTAATTTGGCATGGTCGATAGCGTACTGAGCTTGCTCAGCAGTAAATTTATCGCCATTTTCGTTAGACAATTGGTCGTAGATGCCTTGTTTTGACATGTGCATAATCTTATAATAGCTCTTTGCTCTTTTTAGCGCAGCCTTTTTGTAATTAGCTTGCAAATGGTCAATGGCATACTGAGCATCTTCGGCAGAATATTTTTCAACATCTGATGTCAATTGGTCGTAAATGTCTAATTTTGACATGTTCATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1170739-1169647 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHHR01000001.1 Streptococcus equinus strain NCTC10386, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1170738 36 100.0 30 .................................... TAGCTATACTAACAGTCCGCTTGACAAAAC 1170672 36 100.0 30 .................................... AATTGATACCGAAATTGCTGACCGCATTGC 1170606 36 100.0 30 .................................... TTATTGTGGACTTGGACTAGGTCAGTGGAC 1170540 36 100.0 31 .................................... AGTTTTAAAAACTATGGCGCAATCAGCAGTT 1170473 36 100.0 30 .................................... ATGTATCAACTCAAGAAAATAGTCTTTTAG 1170407 36 100.0 30 .................................... AGGTTCACTTGAAGCGAAAATGGAGCAAGA 1170341 36 100.0 30 .................................... GGCTTGTATCGGAAAAGACAACTTGGGTTT 1170275 36 100.0 30 .................................... TAAAGGAATGCTCAAGCAACCATTCTATAA 1170209 36 100.0 30 .................................... TGAAGATAAACCAAAAATGCAGACCACAAT 1170143 36 100.0 30 .................................... ATAAAAATATGAAAGATTATTATAAGGTTA 1170077 36 100.0 30 .................................... AAACTACTTTAGAAAAGTTTTTAGAAAATA 1170011 36 100.0 30 .................................... CACTGGTTCGGTTTATTACACAGTGCGTGT 1169945 36 100.0 30 .................................... AATTTATGTAAACAAAACCGTCATTTCTTA 1169879 36 100.0 29 .................................... GAAACGCTATTAACCTATTAGATTCAGCT 1169814 36 100.0 30 .................................... TTCGCCTTGAATAACGACCTTATTATAAAA 1169748 36 100.0 30 .................................... ACAGTATTGACTACGTCCTCGATGTTATCT 1169682 36 80.6 0 ....................T...AAA...TCT... | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 98.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTTTCACAAAGAAGAAGGCGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGGAACCGAAGGTAAAGATATCGAGGAAGCTATGAAGCATGCTCGTGAAATGCTTGAGAGTTCGCTAGCTGCGTATCTAGATGAAGGACTTACTCTTCCAAAAGTTATTGATATGAGTGAGCTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACGGTACCAGAATGGTTGGTCAGATTAGCTGACCGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGCTTTGGAGAAAAAGTTGCAACTATAAGTTTTAAGATTATTCAGGAACGTTGAAAAATCAAGGCTTTTAAGGTATAATAAAGCTAATATTATGGAGCTATTCGAGGCTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAAATTTCATGAGAAAAATGGTCTACGAG # Right flank : TAAAACTTTAGTGAAAATCACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAGGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTTTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTGCTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCATTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCCCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //