Array 1 67450-72049 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAXV01000022.1 Brachyspira aalborgi strain PC5587-u PC5587-u_contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 67450 31 100.0 36 ............................... AATACTGTATTGGTAATAAAGTTTGGTATTGCTAAT 67517 31 100.0 35 ............................... CTGACTTTTGATCTTTTCGCTGTATACCAGCTGAA 67583 31 100.0 36 ............................... GCAATAATGGATGTAATCATCGTTATTACTTCTGGT 67650 31 100.0 36 ............................... GGCATTAATATTGTGGAGTATACCGGGTATATTAGT 67717 31 100.0 36 ............................... GAAAACACATGAAGAAAACTTAATCTTTGAAAAAGA 67784 31 100.0 36 ............................... TATATTTACTCCGAATTTGTCTGCCATTACTCTTAC 67851 31 100.0 36 ............................... GATAGCTATATAATGTCAAGAGAGTATATAGCTATC 67918 31 100.0 36 ............................... TAAAATCATAACTTTATAGTTTTACTATGAAGTTAT 67985 31 100.0 36 ............................... TGTTTTCTGACATTACTGCCATTAGTTCTTTATTAA 68052 31 100.0 36 ............................... GATAGCTATATAATGTCAAGAGAGTATATAGCTATC 68119 31 100.0 36 ............................... TACTATAAATTGGCTCCTGTTTATTGTGCTGTCTAC 68186 31 100.0 37 ............................... GTTTATGAAGAATACACAAGAAAACTTGACAAAGTGT 68254 31 100.0 36 ............................... AACGGAATCGGATATTGAAGCGCTTCGTTTGATGGG 68321 31 100.0 37 ............................... TCCACTCTTATAATGTCCTTGTCTAACTTGCCAATTA 68389 31 100.0 36 ............................... AAAAAACCAGGAGGAAAACAATGAGCAAATATAAAC 68456 31 100.0 36 ............................... TATACTCCATTTTACAAACGGCTGTCTTTCTCTTTC 68523 31 100.0 36 ............................... CTTTTTCCTTGAAGAAATACACTTGAATCTGCCCGT 68590 31 100.0 36 ............................... CTGATATCTAAATTGTAATTACTCGTTGAATTACAA 68657 31 100.0 37 ............................... TTACCATGATATTTCCATTTTGCCATTATCGATCCTT 68725 31 100.0 37 ............................... TTGTTTGCGGAATATGATGAAAATGGTTTAACGATGA 68793 31 100.0 37 ............................... ATATACTTGTTTGTTTTGTTTGGTCTCTAAAGTATAA 68861 31 100.0 36 ............................... CTATTTAGAAAGTTTACAAAAGGAATGGGTAAGAAC 68928 31 100.0 37 ............................... TATTATTTTTTTTAGTTTTGAAATCTTTATTTTTTTT 68996 31 100.0 36 ............................... ATTTATAGCATATTACTAATGCCAGGGGATGTGATA 69063 31 100.0 37 ............................... AACGGAATCGGATATTGAAGCGCTTCGTTTGATGGGC 69131 31 100.0 37 ............................... ACAATCTACAATATTTTTATGCCAGATTAAAAATTGA 69199 31 100.0 36 ............................... TGTCATGTTAATCTTAAACCTCCTCGTTTAATCTTG 69266 31 100.0 37 ............................... TTCAAGATTTTAATATGGTTCATAGAATGTTTGGAAG 69334 31 100.0 36 ............................... GTGCAAGCAAGTATGGATTATCATATTATACAAGGC 69401 31 100.0 37 ............................... TTTTTTATACTCCGCTATCGTTTTTATTTAATTGCTG 69469 31 100.0 37 ............................... TTATATTTAGAAAATGCAGAGCCATTATCGGCATTAC 69537 31 100.0 35 ............................... ATTATAAAACTTTTTTTTTACCTTTCACTACCTAA 69603 31 100.0 37 ............................... GGTTCTTGTAATTGGTTTAATATGCTATCCTCTCTTG 69671 31 100.0 36 ............................... ATTATCTCCATATCTTTTATTCATTTCATTATATTT 69738 31 100.0 35 ............................... TTTCATACAGCAGACTTGTTTTTCTAGTCTCTTTA 69804 31 100.0 37 ............................... CCGATAGCTATATACTCTCTTGACATTATATAGCTAT 69872 31 100.0 36 ............................... TTTCGTCCCATTTCTCATTATACATTAGATTAAATA 69939 31 100.0 37 ............................... GTTATTAGCGGAATAGGAAAAGTATTAAAGTTTATAG 70007 31 100.0 36 ............................... CTCACATCTAGGTTATAATTTGCTGTCGAATTACAG 70074 31 100.0 36 ............................... ACGAGGTAATGGTTCTGTCCATTCAACTTCGGAAGT 70141 31 100.0 36 ............................... GCGTTTATGCCGTTTGTTATTTCTCCTGCTACTCTT 70208 31 100.0 36 ............................... ATTTTAAACTTAGATAGTATACAATACATTTTATTG 70275 31 100.0 35 ............................... GTAGATGCTCCGCCTGTTGCGTCAGCTGCTAGTGG 70341 31 100.0 36 ............................... TAGTGTAGTAATAAAAACTCGTTATCTCTTATTCCT 70408 31 100.0 36 ............................... ATAGTTTATGATATAATTTTTCTTTTTCTTCTTTTA 70475 31 100.0 36 ............................... TTTCACATTGTTTGTATATTCTGCATAACCGCTTAA 70542 31 100.0 36 ............................... GAACTTTTTATTAGTATATCCGCTTGTGTATGCAAT 70609 31 100.0 36 ............................... ACAGGTCTTCCACTTTCCATTGCTATATTTATATTA 70676 31 100.0 36 ............................... AACATTTGCATCGTATAGATTTTGATTTATCATTAT 70743 31 100.0 37 ............................... GATACTTTGTCCATCTTTCTTGTGTATTCTTCATAAA 70811 31 100.0 36 ............................... TCCCCAAACCAATTTTTTGCTTCTTTCAATGCTTTA 70878 31 100.0 35 ............................... GGCTGTCCTTTATCTAATATACTGTTTTGTCTCGT 70944 31 100.0 37 ............................... CTTGTATACATTATTCTTCTCCTCCTTCTGCTTTTCT 71012 31 100.0 36 ............................... TTCAAATTGACGGCAATCTATTAAAGAACGACTTAA 71079 31 100.0 36 ............................... TAATTGCCGAGCCTTCCAAATATTTTTTTATCTTAT 71146 31 100.0 37 ............................... TGATGTATTCTTTTAATTTCATTTTGTAATAAGTTGG 71214 31 100.0 36 ............................... GAGATAAGATTAAAAGAAGAAGAATACATAAGAAAT 71281 31 100.0 36 ............................... GTTTTTGCCCATGCCTTTTGTGAACTTTCTAAATAG 71348 31 100.0 36 ............................... ACAAAATTTTTTCCAGTATCAACCAATCTAGCATAA 71415 31 100.0 36 ............................... TTTTTACTTGCAAAAAATCATCGTTTATTATAGGTC 71482 31 100.0 36 ............................... CAGTGCGCGCTTAAGAACTCATCGTCTCTTATACCC 71549 31 100.0 37 ............................... CAATGGGAATTGCCTTTTTTTACTCAAGACAAATATT 71617 31 100.0 36 ............................... TTGCTGGTAAAAAGTCCGCCGTATCGCCTTCTACTT 71684 31 100.0 36 ............................... TTCTCTGCACGACTGTCGCGCGCTCTTCTTTCGTAG 71751 31 100.0 36 ............................... TAATTCTATCGCATGCATAATCGCGCGTTACTAAAT 71818 31 100.0 36 ............................... AAAAAAAGTTCAACCTCGTTATCGCCTCCGACTTTA 71885 31 100.0 36 ............................... TAATTCTATCGCATGCATAATCGCGCGTTACTAAAT 71952 31 100.0 36 ............................... CTATCTTTTGAAGTTTCTTTTTACAATCTTTCAAAT 72019 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 69 31 100.0 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : ATTTGCTCGGAGAAAAAGAATATTCCCCGTTTAAAATATGGTGGTAGAAATGTATATAATTTTAATATATGATATTCAAGTAAACGATGAAGATAATCCTTATGTATTGAAAAAAGTTTTTAATATTTGCAAAAGGTATCTTAATCATATACAAAAATCGGTATTTGAAGGCGAACTTTCAGAACCTAAATACCTTAAATTAAAAGAAGAGCTCTTTGACATATTAAGAGAACATAAAGACTCATGTATAATATTTAAAAGCAGAAACGAAAAGTGGCTTGAAAAAGAGTTTTTAGTAAAAGAAGATATTGACAAAACTTCAAATTTTATATAAAATACAAGTATGTCGATGTATAATCTATAATAATTTGCGGATTATCGACAGACGATTTTTTAAATTAATGTCGTATTTTGTATTGTTATATTATTTTATATCAATACTTGTATCAAATTAATATGTAGAAAATATTAGTTTTGCATATTTCAGAGAGAAAAAACGG # Right flank : TTTATCTTTTTGACCATTTTCAAATTATTTATAAAATATTTTCATTTGTAAAAATAATATTTTTTTAAAACTGCATGATAAAAATAACCTATTGCCACAGATATTATGATCAATAATTTAAATCCAATCTAAAATTGAGAGGATATAAAAATTTAAAGCCATTATCCCCCCCCCCCCCTATAAAGTTATCAAAGAATTTATTTCTGAAATTCTCTCGCCCTTTTTAACGGGAATAAACCAAGCCAAATTATCAACTTTTTCTTTATTCATTTTAATTGAAATTCTAATTCCAAATAAAGTTAATCTCAAATACTCGTTATTATTCGATATTCCAAAAAGCGTCCACCAATTACAATTTAATCTCAATTTTTGATAATTATTATTTGAAATCGTTTCTTTATTTTTAAGCGATAATTCTCTTTCTAATCTTTTATACTCGAAAGAAACAGGCTCAAGAATGCAAGATTGTTTTATAAATGTTTCTCTATCTGAAAAATTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [75.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //