Array 1 432511-431583 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWBW01000005.1 Pseudomonas aeruginosa strain ICBSVIM-2 NL28_S28_L001_R1_001__paired__contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 432510 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 432450 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 432390 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 432330 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 432270 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 432210 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 432150 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 432090 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 432030 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 431970 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 431910 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 431850 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 431790 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 431730 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 431670 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 431610 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37991-39395 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWBW01000016.1 Pseudomonas aeruginosa strain ICBSVIM-2 NL28_S28_L001_R1_001__paired__contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37991 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 38051 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 38111 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 38171 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 38231 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38291 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38351 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38411 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38471 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38532 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38592 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 38652 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 38712 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 38772 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 38832 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 38892 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 38948 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 39008 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 39068 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39128 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 39188 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 39248 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 39308 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39368 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49510-47921 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWBW01000016.1 Pseudomonas aeruginosa strain ICBSVIM-2 NL28_S28_L001_R1_001__paired__contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49509 28 100.0 32 ............................ ATCGATCCCCGCCGATGGCGTAAAGGAAATCC 49449 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 49389 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 49329 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 49269 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 49209 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 49149 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 49089 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 49029 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 48969 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 48909 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 48849 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 48789 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 48729 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 48669 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 48609 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 48549 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 48488 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 48428 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 48368 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 48308 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 48248 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 48188 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 48128 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 48068 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 48008 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 47948 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //