Array 1 232096-229820 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL872283.1 Prevotella multiformis DSM 16608 SCAFFOLD2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================= ================== 232095 49 98.0 28 ................................................A TGACCAGCAACGCCATTCTTGACACCAA 232018 49 100.0 28 ................................................. GGAATGCGCAAGTTGCTGGCATTACGCT 231941 49 98.0 28 ................................................A GCGTTCAGGCAAACGAATTCACGAATGA 231864 49 100.0 28 ................................................. TACTTTAACACAATTAACGATGCGAGTA 231787 49 95.9 28 ...............................................GC ATATAAATTCACGAATCACATCAAAATC 231710 49 95.9 28 ...............................................AA AACGGCACGTTGCAAAGCTTTCGGTCAT 231633 49 95.9 28 ...............................................AA CTTAATTTTATCACCCTCGAAATAAGTT 231556 49 95.9 27 ...............................................AC GATAGTGCTTCTGCCAATCCATGGCAC 231480 49 95.9 27 ...............................................AC GAAACAGAATTGTTATCCAAAGGGTCA 231404 49 95.9 27 ...............................................TG TTAAGAATTGGGTAATCAAAGCGATTT 231328 49 95.9 28 ...............................................TA GAAAGCGGAGTATAAGAAGAAAAGAGTT 231251 49 95.9 28 ...............................................AA TGGATTCATAAACTAAAGATTAAACCCC 231174 49 98.0 28 ................................................C TACGACCGATTGCGTTCAAGCGAATACC 231097 49 98.0 28 ................................................A AACCAAGACTTATAAAAGGCAAAGATAG 231020 49 95.9 28 ...............................................TG AGGATTTTCGCAAGGAGATTCTTTCTCA 230943 49 95.9 28 ...............................................AG CAACACGCTCATACTTATCCATCAACCA 230866 49 98.0 27 ................................................G GGATAGGTTAGGGTAGGGTAGAGAGCA 230790 49 98.0 28 ................................................G TCTAAGACCGATGCCTTGCCGTAAGCCT 230713 49 100.0 27 ................................................. GCAATAGACGGTTCTTCCCCCTACACG 230637 49 95.9 28 ...............................................TA GGTAAATCTATAGTGTCTATATTAACCA 230560 49 100.0 28 ................................................. CTTCGCTATGTTTCATATGTTCTTTATA 230483 49 95.9 28 ...............................................TG CATACCGTACAAGTGATTATACACGCTG 230406 49 98.0 29 ................................................C TTAATGTCTGTATCATTCCATTTGAATAT 230328 49 95.9 29 ...............................................TC ATACATATAGTTATTTTGTTTGTCTTTCA 230250 49 98.0 28 ...............................................T. AACAGAAGCATAGGAAACAACGAGTTTG 230173 49 95.9 27 ...............................................TG GAAAAGTATTACCTCCGTGGCTTTATT 230097 49 95.9 27 ...............................................TC ATTTCATTTTAAAAATTTGAAAAATTT 230021 49 98.0 27 ...............................................T. GGTATTTGACTGGACTGACCAAGAGAC 229945 49 100.0 28 ................................................. CCAGCAGAACACGGTGCAGTTCGAAGTT 229868 49 95.9 0 ...............................................TC | ========== ====== ====== ====== ================================================= ============================= ================== 30 49 97.2 28 GTTGTGATTTGCTTGAAAATTCCTACCTTTGTGGTAGCAACAACAACCT # Left flank : GCAGTTGTCCTGGCTTGTTTACACACAGAAAGAGGAAGGGGAGCGTGTGGACGAGGCGGACATAAAACAGGCTTCGGAGGATCTTCTTGCTACGAATGAAGTGCTTTTCATGCAGATGGTGGAGCCGCTATCAGGATATCAGCTTAACTTCCTGCGTGCGATCTGCACCGGCGTCACGAAGAATTTTACACTGTCGGAAGTCCGGGAGAAGTACCATTTAGGCAGCTATTCCAATGTGAACCGGCTGAAGACAGCCCTTCTGGAACGTGACCTGATAGAAAAGGAAGGAGAAGAACTGAAAATAACCGACCCTGTTTTTCACAAGTGGTTCCAAAGAAGAATGATGGTATAATTCTGAGTTTCCTATTCATCTAAGTGTTCATGACGATGATATCGCCTCAAACTTCATATTCAGCATGTTCAAGACGATTATATAACTTCAAACTTCATATTCATTAAGTAGGGAATTTCAGTTAATTCCCTACTTACACTTACAACAT # Right flank : ATTGAAGACAAATGGTTGACTATCAGATGGATGGGTTGTCGTTTGGAAAATAAAAAATACCACAAGGCAAAAGTCCTACACTTTAAAGTGTGGGACTTTTTGCTTGCTATGACATAAGGAATAAGAAAAATATGGGTACTTCTTGTCTGTTTTACCATTACTTCTACGAAACTCTTATTGAAGGTGCATTTTAAACTATTGTTGTTCGGAAAATAATGCTTGAAATTCCTATAGCCTTTGTTTACCGGAAATACAGGCACATTTATCCAGTTTTATTTTGTTTCAAGTAGTAACCGTTACAGGAAACTATAATCTGAATGACTTTTATCCAAACATTCAGAGAAAGATACTCCAACTGATACTTTTATCATTAATTCCGTAACTAAACACGTAATTTATTAATAATATGTATTATAAGTATCTGAGGAACAATAAGTTCCTAAATTTTTGCTATCTGTATGATTTTCACTGACTTTATGGTGCAGAACAAATAGTACGAT # Questionable array : NO Score: 4.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:-0.5, 7:-0.02, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATTCCTACCTTTGTGGTAGCAACAACAACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.70%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 185895-183930 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL872282.1 Prevotella multiformis DSM 16608 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 185894 37 100.0 33 ..................................... AGCATGGTTTGATGCCTACTTCCCGACGCGTGA 185824 37 100.0 34 ..................................... GCGGACTTTAACGAGTCTGCCAACGTTACACGGG 185753 37 100.0 33 ..................................... TAGCAAAAAACTATTTTTCATAGAGCTCATTAG 185683 37 100.0 34 ..................................... GAACGAAACAACCGCCCTTAAGGCTGCAAAAGCA 185612 37 100.0 32 ..................................... ATACACAAGAGTATATTTATGCATTTTAATCG 185543 37 100.0 36 ..................................... GATGGAATAATGATGATTGTCGTAGAATGTGTGGAC 185470 37 100.0 35 ..................................... ATTCAATCAGCTGTAGCGAAGAAAGTACCTACAGT 185398 37 100.0 36 ..................................... AAAGACTGTTGTTGAACTTAGGAACTTTCTTAAAGT 185325 37 100.0 34 ..................................... TTGCACAAGAAGATGGTACTTACAAAGAGGGTGA 185254 37 100.0 34 ..................................... ACAAAAGGAATAAGAAAACAATTGTTTTTAAATG 185183 37 100.0 35 ..................................... TAAGAGACTTGCAGGCAAGTACATTAATTGCGGAT 185111 37 100.0 35 ..................................... TGAATCGTGAGTTGGAAATGGTAGTTGCTAACGGT 185039 37 100.0 35 ..................................... GTTTTGTGGAGAGCAGACTCAGCGATACTTTAGAA 184967 37 100.0 33 ..................................... ACTCAGACTACTAAGGTTTGTAACTTTGAGTAT 184897 37 100.0 36 ..................................... AGGTTTATTCTTCACCAGTACGTAGAGGATCAGACG 184824 37 100.0 36 ..................................... ACGACATCACCGCCAGCTTGGTTGCCAGAACGGGCA 184751 37 100.0 33 ..................................... GAAATTGTTAATAATTACTTAGACGAGTTTGAA 184681 37 100.0 36 ..................................... CAACAAAAGAGAACCGCAACGGTGTTAAATCCAAGT 184608 37 100.0 35 ..................................... ATTTAATTCTCCTAATTTAATAGAAATGTATAACA 184536 37 100.0 34 ..................................... GCCCATACATCCTTTCTGTAAAAGCCGGGAGAGA 184465 37 100.0 36 ..................................... GAACTACGACAGTATGGACGAGTTATTCGCCGCATG 184392 37 100.0 35 ..................................... TAATCCAAAGAAGCCTAAACGCTTATGCGCATGGT 184320 37 100.0 31 ..................................... TGGAGATACCAGAGGCATTGGCGGATTTCAA 184252 37 100.0 33 ..................................... TGGGTCAAAATGACGCTGCCGCCCTTAAGGCTA 184182 37 100.0 34 ..................................... TGGGCGCAAACGATGCGGCCGCCCTCAAAGTTGC 184111 37 100.0 36 ..................................... ACTTTACAAATTTCAGTTATGCGCAAAAAACAGGGA 184038 37 100.0 35 ..................................... AAAGCAGCATTCGAGGGGCAAACAAGCAACATTCA 183966 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 28 37 100.0 34 GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Left flank : TTCTCGGAGATGGTCTGACCGTCAGCCGGCATCACATCATAGAAAAAGCCGTTCTCCACTGCCGGGCCGAAGCCGAACTGAATGCCCGGATAGAGTTCCTGCAATGCCTCGGCAAGCAGATGGGCAGAGGTGTGCCAGAAAGTGTGCTTGCCTTCTTCGTCATCGAACTTGTAAAGTGCGATGGTCGCATCTCCGTTGATGGGACGGTTCAGTTCTGTCGTTACGCCATTGACACCGCAAGATACAACGTCACGGGCGAGAGCCGGCGAAATGCTCTCGGCGATTTGATAACCAGTCACCCCCTGTTCGTATTCACGAACGGAGCCGTCTGGGAAAGTGATTTTAACCATACTACAAATTAGTTTTATAAATCAAATGTTGTGGCAAAGGTACTACTTTTAATTTATAAATCATAATTTTTTTGCCCCCAAAGGCTCTTCTTCCGAATCCTTGTTCTAATATTGAGTGAAGGTTGAGGACGCAAAGCGAACTCTTGCAAA # Right flank : AGTAAAGACTTGTATTCCTTTATATGCCGCAGCTCCATGCGTGTAAGCCCTAAAAATGCTTGAGGAATTAAGAAAAATTAACCATATTCCAAGCGAGTGCAAAGGTACGAAAAACTGTGCAGAAAGTCAAAGAGCGATGCGTTAAATATTCTTTATGGAGGAAGCATTGCTGCTGCTTTCCCTCATGGGGAGGACATTCTTCCCTGTTGTAGAAGGTATCCTCGCTGCCATCTTCAGAAGAACAATGTGTTGCGCGAACGGATGATGACATCTATGCTGATGTCTTCACCGATGATCTGCATTGCCCGGATCTGATCGGTGGAGACAGGACAGACGATGATGCTGTCGTGGTTGTCGTAAAGCGACTGCACCTCGGCAAGGTCTCTTTTAATTTCATCGTAGACGGTCTTGTCGAGGTCGGCAAGGAAGATGGAACGCTGGATGCGTGTGCATCCTTTCCGTTCCAGGTATTTTGCGATATGATAGCGTACCTTGTCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //