Array 1 716981-718108 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSYC01000001.1 Pseudomonas aeruginosa strain AUS283 IPC323_1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 716981 29 100.0 32 ............................. CGCGCCTCATTGACCACGCGGATGCGGTCGTA 717042 29 100.0 32 ............................. CCCGCGAGAAGCTGCTCCAGGAGCAGGAGCAG 717103 29 100.0 32 ............................. CCAGAAATGTACTCGGACGCCGATTGGGAAAT 717164 29 100.0 32 ............................. GTTCTCGAGCATCGTGGCTTCCACGAATTCCC 717225 29 100.0 32 ............................. CGTGCAGTCGGTAAGAATCATCGCGCTGCCGC 717286 29 100.0 33 ............................. CTTCTATCCGAAACCCAGGTCACGCCAGACAAC 717348 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 717409 29 100.0 32 ............................. TCGTAGCCCTCCGGGAGGGATTCGAACTTGTA 717470 29 100.0 32 ............................. CCTCCGACGTGGAGGTTGAGGCGGATGGCTAC 717531 29 100.0 32 ............................. TGGAACTTCAGGTCCTTGTTGGTCAGGCGCTT 717592 29 100.0 32 ............................. CTCCCGTGAGCACTCAGGGCATCCAGTCGGCT 717653 29 100.0 32 ............................. AAAGCCATCGGGGCACGCATCGTTGCGCCAGC 717714 29 100.0 32 ............................. GCGATCTGAGCACCTGCGGATGCGTAGATGTA 717775 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 717836 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 717897 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 717958 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 718019 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 718080 28 79.3 0 A..........A..C..-.....A....T | C [718084] ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.4 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGCCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 727281-729448 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSYC01000001.1 Pseudomonas aeruginosa strain AUS283 IPC323_1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 727281 29 100.0 33 ............................. TGGGTCTGGCTGTCCTGCCTGCCCGAGGAGTAC 727343 29 100.0 33 ............................. TCCGGCGGCGCCTACCTCTCTCGCGTGCTCATC 727405 29 100.0 32 ............................. CCGTCTGCACTGCGCGCAATGACGTGATGATT 727466 29 100.0 32 ............................. GGAGGGTATGTCTTCGAGCATCGACAAGTGAT 727527 29 100.0 32 ............................. CCAGACAGCGCCTCGGACGAGGTCGAGGGCGT 727588 29 100.0 32 ............................. TTTCGTCGTGCGACTCATACACTGGCGCCTCC 727649 29 100.0 33 ............................. GTAGGTGGTCAGCGCCTGCGTGGTCGTCTGGTT 727711 29 100.0 32 ............................. ACTTGCCTTGATGACCTCGCGCTTTTCCTGCT 727772 29 100.0 32 ............................. TCGTAGTCTACGATGAAGCGCGGGTCGGTTTC 727833 29 100.0 32 ............................. TTGAACAGCAAGGACGCTGTACTCAAGCCCGC 727894 29 100.0 32 ............................. TTGATGGTGCGGTAGGCTGCTTTGCCCTCCTC 727955 29 100.0 32 ............................. CACGTTTCGGTCGGCTATCGCGTCCTGCGCGC 728016 29 100.0 32 ............................. TGTTGGAACCCGCTAGCGCGGGCGAGCAGGCG 728077 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 728138 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 728199 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 728260 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 728321 29 96.6 32 .................T........... CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 728382 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 728443 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 728504 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 728565 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 728626 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 728688 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 728749 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 728810 29 100.0 32 ............................. GTGTAGCGGAACCGGGCGGCGCCGCCGGCGAG 728871 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 728932 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 728993 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 729054 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 729115 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 729176 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 729237 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 729298 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 729359 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 729420 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.2 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //